Wall clock time and date at job start Mon Mar 30 2020 00:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86794 * 120.00392 * 2 1 4 4 H 1.48506 * 109.47036 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46998 * 299.99557 * 3 2 1 6 6 H 1.48495 * 109.47053 * 59.99908 * 3 2 1 7 7 C 1.38816 * 119.99512 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99948 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00507 * 359.97438 * 7 2 1 10 10 C 1.46494 * 120.00675 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47553 * 180.02562 * 10 9 7 12 12 C 1.30995 * 119.99959 * 125.00424 * 11 10 9 13 13 C 1.50706 * 119.99788 * 180.02562 * 12 11 10 14 14 N 1.46497 * 109.47174 * 124.99515 * 13 12 11 15 15 C 1.34777 * 119.99525 * 179.97438 * 14 13 12 16 16 O 1.21283 * 120.00463 * 0.02562 * 15 14 13 17 17 C 1.50700 * 119.99675 * 179.72583 * 15 14 13 18 18 H 1.09004 * 109.52746 * 305.27569 * 17 15 14 19 19 C 1.53143 * 109.52830 * 65.40873 * 17 15 14 20 20 O 1.43067 * 109.15321 * 175.21265 * 19 17 15 21 21 C 1.43073 * 113.59570 * 302.04844 * 20 19 17 22 22 C 1.53142 * 109.15200 * 57.95123 * 21 20 19 23 23 O 1.43074 * 109.52424 * 185.15027 * 17 15 14 24 24 H 0.97001 * 119.99921 * 0.02562 * 1 2 3 25 25 H 0.97002 * 119.99642 * 0.02562 * 9 7 2 26 26 H 1.09003 * 109.46795 * 59.99901 * 10 9 7 27 27 H 1.09002 * 109.47267 * 300.00462 * 10 9 7 28 28 H 1.08001 * 119.99541 * 304.99809 * 11 10 9 29 29 H 1.08001 * 120.00500 * 359.97438 * 12 11 10 30 30 H 1.08995 * 109.46956 * 4.99219 * 13 12 11 31 31 H 1.09001 * 109.46317 * 244.99666 * 13 12 11 32 32 H 0.97000 * 120.00580 * 0.02562 * 14 13 12 33 33 H 1.09000 * 109.52208 * 295.12131 * 19 17 15 34 34 H 1.08997 * 109.52354 * 55.24501 * 19 17 15 35 35 H 1.08996 * 109.52463 * 177.85112 * 21 20 19 36 36 H 1.09000 * 109.52198 * 297.98153 * 21 20 19 37 37 H 1.09000 * 109.52390 * 64.58931 * 22 21 20 38 38 H 1.08998 * 109.52648 * 184.72447 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7103 1.3461 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8915 2.3963 1.2124 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3255 -2.3882 -0.0005 10 6 2.0578 -3.6569 -0.0005 11 6 1.0785 -4.8023 -0.0012 12 6 1.1478 -5.7228 -0.9306 13 6 0.1680 -6.8679 -0.9315 14 7 -0.5075 -6.9316 -2.2299 15 6 -1.4324 -7.8840 -2.4622 16 8 -1.7058 -8.6880 -1.5963 17 6 -2.1318 -7.9457 -3.7957 18 1 -2.5884 -6.9799 -4.0126 19 6 -1.1175 -8.2897 -4.8903 20 8 -1.8065 -8.4561 -6.1331 21 6 -2.8181 -9.4672 -6.0961 22 6 -3.8324 -9.1232 -5.0016 23 8 -3.1445 -8.9556 -3.7582 24 1 -0.4850 0.8401 -0.0004 25 1 0.3554 -2.3881 -0.0005 26 1 2.6844 -3.7147 0.8895 27 1 2.6845 -3.7147 -0.8905 28 1 0.3195 -4.8642 0.7647 29 1 1.9065 -5.6607 -1.6967 30 1 -0.5705 -6.7148 -0.1448 31 1 0.7008 -7.8019 -0.7529 32 1 -0.2886 -6.2888 -2.9226 33 1 -0.3918 -7.4815 -4.9814 34 1 -0.6021 -9.2146 -4.6317 35 1 -3.3240 -9.5118 -7.0605 36 1 -2.3605 -10.4326 -5.8798 37 1 -4.3470 -8.1976 -5.2596 38 1 -4.5588 -9.9309 -4.9111 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568820059.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:20 Heat of formation + Delta-G solvation = -93.123305 kcal Electronic energy + Delta-G solvation = -19914.986196 eV Core-core repulsion = 16565.673902 eV Total energy + Delta-G solvation = -3349.312293 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.75329 -39.15592 -36.55387 -36.16374 -34.76472 -33.07904 -32.06127 -30.57774 -28.74458 -27.03821 -25.38787 -24.08615 -22.33822 -21.83435 -20.76979 -19.56286 -17.91110 -17.38808 -17.14633 -16.83997 -16.41956 -15.86256 -15.55857 -15.22059 -14.83519 -14.67536 -13.99503 -13.77694 -13.65778 -13.30085 -13.25122 -12.92264 -12.61244 -12.12106 -11.98059 -11.88841 -11.24966 -11.07267 -11.01793 -10.86320 -10.65828 -10.08651 -10.02625 -9.84016 -9.61238 -9.35058 -9.05021 -8.76885 -6.98416 -5.81276 -3.11018 2.12265 2.36118 2.78454 3.23561 3.40695 3.46324 3.48644 3.66676 4.09018 4.42702 4.48183 4.54499 4.56481 4.67870 4.78748 4.92473 5.00720 5.13375 5.20414 5.30208 5.33257 5.51592 5.55004 5.74200 5.94439 6.09044 6.19296 6.42402 6.46554 6.51160 6.53365 6.84819 7.09388 7.31208 7.65691 8.00560 8.36969 9.48420 10.04350 10.39511 11.41470 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.026828 B = 0.002827 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.444830 B = 9903.691633 C =10382.907562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.242 4.242 8 H 0.072 0.928 9 N -0.730 5.730 10 C 0.172 3.828 11 C -0.104 4.104 12 C -0.204 4.204 13 C 0.157 3.843 14 N -0.719 5.719 15 C 0.521 3.479 16 O -0.519 6.519 17 C 0.037 3.963 18 H 0.097 0.903 19 C 0.038 3.962 20 O -0.372 6.372 21 C 0.020 3.980 22 C 0.023 3.977 23 O -0.351 6.351 24 H 0.255 0.745 25 H 0.385 0.615 26 H 0.032 0.968 27 H 0.026 0.974 28 H 0.110 0.890 29 H 0.116 0.884 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.404 0.596 33 H 0.113 0.887 34 H 0.068 0.932 35 H 0.108 0.892 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.272 -19.315 -11.717 22.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.374 5.374 10 C 0.045 3.955 11 C -0.123 4.123 12 C -0.223 4.223 13 C 0.034 3.966 14 N -0.373 5.373 15 C 0.305 3.695 16 O -0.393 6.393 17 C -0.025 4.025 18 H 0.115 0.885 19 C -0.040 4.040 20 O -0.291 6.291 21 C -0.057 4.057 22 C -0.054 4.054 23 O -0.269 6.269 24 H 0.065 0.935 25 H 0.219 0.781 26 H 0.049 0.951 27 H 0.044 0.956 28 H 0.128 0.872 29 H 0.134 0.866 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.239 0.761 33 H 0.131 0.869 34 H 0.087 0.913 35 H 0.126 0.874 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -4.332 -19.793 -11.064 23.086 hybrid contribution 0.146 1.291 -0.330 1.341 sum -4.186 -18.502 -11.394 22.129 Atomic orbital electron populations 1.69676 1.05150 1.25662 1.57554 1.24773 0.95568 0.97796 1.02838 0.86088 0.78770 0.83916 0.77234 1.20499 1.21794 1.21789 1.19287 0.91104 0.83983 1.42951 0.91005 1.42305 1.05961 0.99572 1.89601 1.19831 0.92609 0.84562 0.98498 1.23359 0.98161 0.93862 0.96928 1.22671 1.01031 0.97024 1.01578 1.20352 0.93914 0.97835 0.84451 1.45974 1.40970 1.32849 1.17491 1.19885 0.79884 0.81380 0.88396 1.90737 1.62867 1.39827 1.45886 1.22600 0.91356 0.94252 0.94302 0.88494 1.23150 0.93742 1.03398 0.83692 1.88135 1.51350 1.57831 1.31767 1.23327 0.90034 0.91707 1.00586 1.23357 0.94786 1.02950 0.84340 1.88233 1.50017 1.56435 1.32196 0.93476 0.78134 0.95088 0.95627 0.87213 0.86626 0.90988 0.90875 0.76085 0.86877 0.91326 0.87361 0.91791 0.91686 0.87122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.06 13.06 55.49 0.72 -27.34 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 6 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 7 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 8 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 9 N -0.73 -18.37 5.59 -61.09 -0.34 -18.72 16 10 C 0.17 3.36 6.70 -5.20 -0.03 3.33 16 11 C -0.10 -1.63 9.24 -36.03 -0.33 -1.96 16 12 C -0.20 -2.62 9.24 -36.02 -0.33 -2.95 16 13 C 0.16 1.89 6.11 -5.19 -0.03 1.86 16 14 N -0.72 -7.89 5.52 -61.47 -0.34 -8.23 16 15 C 0.52 6.67 7.18 -10.98 -0.08 6.59 16 16 O -0.52 -8.86 16.51 -14.26 -0.24 -9.09 16 17 C 0.04 0.38 3.25 -27.81 -0.09 0.29 16 18 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 19 C 0.04 0.32 6.30 37.23 0.23 0.56 16 20 O -0.37 -3.45 10.85 -48.76 -0.53 -3.98 16 21 C 0.02 0.14 7.05 37.23 0.26 0.40 16 22 C 0.02 0.17 7.05 37.23 0.26 0.44 16 23 O -0.35 -4.17 10.03 -62.49 -0.63 -4.80 16 24 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 25 H 0.39 10.20 7.66 -40.82 -0.31 9.89 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.03 0.50 7.79 -51.93 -0.40 0.09 16 28 H 0.11 1.70 7.84 -52.49 -0.41 1.29 16 29 H 0.12 1.38 7.84 -52.49 -0.41 0.97 16 30 H 0.07 0.95 7.79 -51.93 -0.40 0.55 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.40 3.54 8.39 -40.82 -0.34 3.19 16 33 H 0.11 0.74 8.07 -51.93 -0.42 0.32 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 326.71 15.07 4.92 4.92 Total: -1.00 -34.59 326.71 -7.47 -42.06 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -5.63 Total: 6.82 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: -0.39 Total: 1.18 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: 0.04 Total: -54.29 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -1.39 Total: -17.87 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.59 -7.47 -42.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568820059.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.059 kcal (2) G-P(sol) polarization free energy of solvation -34.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds