Wall clock time and date at job start Mon Mar 30 2020 00:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86794 * 120.00392 * 2 1 4 4 H 1.48506 * 109.47036 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46998 * 299.99557 * 3 2 1 6 6 H 1.48495 * 109.47053 * 59.99908 * 3 2 1 7 7 C 1.38816 * 119.99512 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99948 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00507 * 359.97438 * 7 2 1 10 10 C 1.46494 * 120.00675 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47553 * 180.02562 * 10 9 7 12 12 C 1.30995 * 119.99959 * 125.00424 * 11 10 9 13 13 C 1.50706 * 119.99788 * 180.02562 * 12 11 10 14 14 N 1.46497 * 109.47174 * 124.99515 * 13 12 11 15 15 C 1.34777 * 119.99525 * 179.97438 * 14 13 12 16 16 O 1.21283 * 120.00463 * 0.02562 * 15 14 13 17 17 C 1.50700 * 119.99675 * 179.72583 * 15 14 13 18 18 H 1.09004 * 109.52746 * 305.27569 * 17 15 14 19 19 C 1.53143 * 109.52830 * 65.40873 * 17 15 14 20 20 O 1.43067 * 109.15321 * 175.21265 * 19 17 15 21 21 C 1.43073 * 113.59570 * 302.04844 * 20 19 17 22 22 C 1.53142 * 109.15200 * 57.95123 * 21 20 19 23 23 O 1.43074 * 109.52424 * 185.15027 * 17 15 14 24 24 H 0.97001 * 119.99921 * 0.02562 * 1 2 3 25 25 H 0.97002 * 119.99642 * 0.02562 * 9 7 2 26 26 H 1.09003 * 109.46795 * 59.99901 * 10 9 7 27 27 H 1.09002 * 109.47267 * 300.00462 * 10 9 7 28 28 H 1.08001 * 119.99541 * 304.99809 * 11 10 9 29 29 H 1.08001 * 120.00500 * 359.97438 * 12 11 10 30 30 H 1.08995 * 109.46956 * 4.99219 * 13 12 11 31 31 H 1.09001 * 109.46317 * 244.99666 * 13 12 11 32 32 H 0.97000 * 120.00580 * 0.02562 * 14 13 12 33 33 H 1.09000 * 109.52208 * 295.12131 * 19 17 15 34 34 H 1.08997 * 109.52354 * 55.24501 * 19 17 15 35 35 H 1.08996 * 109.52463 * 177.85112 * 21 20 19 36 36 H 1.09000 * 109.52198 * 297.98153 * 21 20 19 37 37 H 1.09000 * 109.52390 * 64.58931 * 22 21 20 38 38 H 1.08998 * 109.52648 * 184.72447 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7103 1.3461 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8915 2.3963 1.2124 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3255 -2.3882 -0.0005 10 6 2.0578 -3.6569 -0.0005 11 6 1.0785 -4.8023 -0.0012 12 6 1.1478 -5.7228 -0.9306 13 6 0.1680 -6.8679 -0.9315 14 7 -0.5075 -6.9316 -2.2299 15 6 -1.4324 -7.8840 -2.4622 16 8 -1.7058 -8.6880 -1.5963 17 6 -2.1318 -7.9457 -3.7957 18 1 -2.5884 -6.9799 -4.0126 19 6 -1.1175 -8.2897 -4.8903 20 8 -1.8065 -8.4561 -6.1331 21 6 -2.8181 -9.4672 -6.0961 22 6 -3.8324 -9.1232 -5.0016 23 8 -3.1445 -8.9556 -3.7582 24 1 -0.4850 0.8401 -0.0004 25 1 0.3554 -2.3881 -0.0005 26 1 2.6844 -3.7147 0.8895 27 1 2.6845 -3.7147 -0.8905 28 1 0.3195 -4.8642 0.7647 29 1 1.9065 -5.6607 -1.6967 30 1 -0.5705 -6.7148 -0.1448 31 1 0.7008 -7.8019 -0.7529 32 1 -0.2886 -6.2888 -2.9226 33 1 -0.3918 -7.4815 -4.9814 34 1 -0.6021 -9.2146 -4.6317 35 1 -3.3240 -9.5118 -7.0605 36 1 -2.3605 -10.4326 -5.8798 37 1 -4.3470 -8.1976 -5.2596 38 1 -4.5588 -9.9309 -4.9111 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568820059.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:20 Heat of formation + Delta-G solvation = -119.210206 kcal Electronic energy + Delta-G solvation = -19916.117409 eV Core-core repulsion = 16565.673902 eV Total energy + Delta-G solvation = -3350.443506 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.57666 -40.04978 -37.71265 -37.10041 -36.23401 -34.53290 -33.06254 -32.15875 -29.60688 -28.32611 -26.33585 -25.55516 -23.70261 -22.80633 -21.72673 -20.77609 -19.16782 -18.74651 -18.17150 -17.61987 -17.11119 -16.73655 -16.67772 -16.40531 -16.06731 -15.79732 -15.40742 -15.17435 -14.92785 -14.57662 -14.29520 -14.08430 -13.50555 -13.38483 -13.23484 -12.89272 -12.75767 -12.65304 -12.15149 -12.00278 -11.94508 -11.78168 -11.65878 -11.09307 -10.96995 -10.41606 -10.32435 -10.00656 -9.01229 -7.96262 -5.26009 1.00246 1.37351 1.48791 1.49535 1.59746 1.87938 2.57130 2.62563 2.90759 3.37928 3.40119 3.61293 3.72812 3.82086 3.94476 4.09565 4.11842 4.22967 4.24463 4.44932 4.47478 4.52224 4.66326 4.71030 4.77030 4.78931 4.93285 5.01639 5.22400 5.48231 5.66187 5.81652 5.83873 5.86756 6.26161 6.40621 7.05538 7.32227 8.06527 8.30056 9.27437 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.026828 B = 0.002827 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.444830 B = 9903.691633 C =10382.907562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.077 4.077 3 Si 0.976 3.024 4 H -0.264 1.264 5 H -0.292 1.292 6 H -0.294 1.294 7 C -0.247 4.247 8 H 0.079 0.921 9 N -0.745 5.745 10 C 0.173 3.827 11 C -0.132 4.132 12 C -0.160 4.160 13 C 0.158 3.842 14 N -0.707 5.707 15 C 0.521 3.479 16 O -0.567 6.567 17 C 0.039 3.961 18 H 0.111 0.889 19 C 0.042 3.958 20 O -0.385 6.385 21 C 0.018 3.982 22 C 0.017 3.983 23 O -0.385 6.385 24 H 0.252 0.748 25 H 0.374 0.626 26 H 0.030 0.970 27 H 0.036 0.964 28 H 0.106 0.894 29 H 0.135 0.865 30 H 0.060 0.940 31 H 0.083 0.917 32 H 0.418 0.582 33 H 0.135 0.865 34 H 0.064 0.936 35 H 0.134 0.866 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.402 -19.733 -13.242 24.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.269 4.269 3 Si 0.805 3.195 4 H -0.189 1.189 5 H -0.219 1.219 6 H -0.221 1.221 7 C -0.378 4.378 8 H 0.097 0.903 9 N -0.388 5.388 10 C 0.047 3.953 11 C -0.151 4.151 12 C -0.179 4.179 13 C 0.035 3.965 14 N -0.361 5.361 15 C 0.306 3.694 16 O -0.445 6.445 17 C -0.022 4.022 18 H 0.128 0.872 19 C -0.035 4.035 20 O -0.304 6.304 21 C -0.059 4.059 22 C -0.059 4.059 23 O -0.304 6.304 24 H 0.060 0.940 25 H 0.206 0.794 26 H 0.048 0.952 27 H 0.053 0.947 28 H 0.124 0.876 29 H 0.153 0.847 30 H 0.078 0.922 31 H 0.101 0.899 32 H 0.255 0.745 33 H 0.153 0.847 34 H 0.083 0.917 35 H 0.152 0.848 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.414 -20.224 -12.618 24.081 hybrid contribution -0.125 1.285 0.105 1.295 sum -3.540 -18.939 -12.513 22.974 Atomic orbital electron populations 1.69829 1.06688 1.26104 1.59415 1.25616 0.96443 1.01254 1.03576 0.85040 0.78275 0.79556 0.76673 1.18866 1.21885 1.22131 1.19708 0.91633 0.85185 1.41309 0.90341 1.42550 1.05728 1.00977 1.89529 1.19919 0.93156 0.83618 0.98579 1.23018 0.98789 0.94248 0.99052 1.22759 1.00022 0.95243 0.99897 1.20279 0.93633 0.97833 0.84774 1.45838 1.40247 1.32648 1.17334 1.20352 0.79540 0.80634 0.88843 1.90713 1.64474 1.41766 1.47580 1.22637 0.91665 0.94758 0.93171 0.87162 1.23186 0.93387 1.04031 0.82940 1.88119 1.51890 1.58518 1.31827 1.23504 0.89570 0.91184 1.01603 1.23609 0.95073 1.04044 0.83146 1.88184 1.50670 1.56922 1.34584 0.93955 0.79408 0.95243 0.94661 0.87571 0.84714 0.92203 0.89852 0.74491 0.84736 0.91746 0.84823 0.91727 0.90997 0.85392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.08 13.06 21.65 0.28 -58.80 16 2 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 3 Si 0.98 45.54 29.55 68.60 2.03 47.57 16 4 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 5 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 6 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 7 C -0.25 -13.64 9.99 84.03 0.84 -12.80 16 8 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 9 N -0.75 -37.49 5.59 -347.17 -1.94 -39.43 16 10 C 0.17 6.61 6.70 85.63 0.57 7.19 16 11 C -0.13 -4.00 9.24 25.65 0.24 -3.76 16 12 C -0.16 -3.76 9.24 25.65 0.24 -3.52 16 13 C 0.16 3.56 6.11 85.64 0.52 4.08 16 14 N -0.71 -14.28 5.52 -466.79 -2.58 -16.85 16 15 C 0.52 12.89 7.18 87.66 0.63 13.52 16 16 O -0.57 -19.43 16.51 15.91 0.26 -19.17 16 17 C 0.04 0.76 3.25 29.90 0.10 0.86 16 18 H 0.11 1.82 8.14 -2.39 -0.02 1.81 16 19 C 0.04 0.64 6.30 72.03 0.45 1.10 16 20 O -0.38 -6.33 10.85 -136.05 -1.48 -7.80 16 21 C 0.02 0.21 7.05 72.03 0.51 0.72 16 22 C 0.02 0.24 7.05 72.03 0.51 0.75 16 23 O -0.38 -8.88 10.03 -122.91 -1.23 -10.11 16 24 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 25 H 0.37 20.12 7.66 -92.71 -0.71 19.41 16 26 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.04 1.29 7.79 -2.39 -0.02 1.27 16 28 H 0.11 3.30 7.84 -2.91 -0.02 3.27 16 29 H 0.14 2.72 7.84 -2.91 -0.02 2.70 16 30 H 0.06 1.55 7.79 -2.39 -0.02 1.53 16 31 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.42 6.23 8.39 -92.71 -0.78 5.46 16 33 H 0.13 1.39 8.07 -2.39 -0.02 1.37 16 34 H 0.06 1.03 8.14 -2.39 -0.02 1.02 16 35 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -74.53 326.71 0.00 -74.53 By element: Atomic # 1 Polarization: 26.27 SS G_CDS: -0.42 Total: 25.85 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: 5.07 Total: 4.22 kcal Atomic # 7 Polarization: -110.85 SS G_CDS: -4.23 Total: -115.09 kcal Atomic # 8 Polarization: -34.64 SS G_CDS: -2.45 Total: -37.09 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -74.53 0.00 -74.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568820059.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.681 kcal (2) G-P(sol) polarization free energy of solvation -74.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds