Wall clock time and date at job start Mon Mar 30 2020 02:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08995 * 109.47158 * 2 1 4 4 C 1.53002 * 109.47189 * 239.99798 * 2 1 3 5 5 N 1.46501 * 109.46955 * 184.99985 * 4 2 1 6 6 C 1.34783 * 119.99476 * 179.97438 * 5 4 2 7 7 O 1.21727 * 120.00406 * 0.02562 * 6 5 4 8 8 C 1.46379 * 119.99586 * 179.97438 * 6 5 4 9 9 C 1.33978 * 119.23322 * 359.73485 * 8 6 5 10 10 O 1.35001 * 121.69002 * 180.11843 * 9 8 6 11 11 C 1.43240 * 116.82890 * 343.31805 * 10 9 8 12 12 C 1.53550 * 108.08882 * 45.24956 * 11 10 9 13 13 O 1.36209 * 119.23404 * 179.97438 * 8 6 5 14 14 N 1.46498 * 109.46877 * 119.99967 * 2 1 3 15 15 C 1.46504 * 120.00411 * 60.00474 * 14 2 1 16 16 C 1.36939 * 120.00069 * 239.99644 * 14 2 1 17 17 H 1.08002 * 119.99975 * 339.94161 * 16 14 2 18 18 C 1.38813 * 120.00425 * 159.93670 * 16 14 2 19 19 N 1.31624 * 119.99673 * 344.41302 * 18 16 14 20 20 Si 1.86791 * 120.00401 * 164.13730 * 18 16 14 21 21 H 1.48504 * 109.47298 * 84.87845 * 20 18 16 22 22 H 1.48496 * 109.47349 * 204.88146 * 20 18 16 23 23 H 1.48500 * 109.47219 * 324.87866 * 20 18 16 24 24 H 1.08998 * 109.47748 * 300.00135 * 1 2 3 25 25 H 1.09006 * 109.47132 * 60.00432 * 1 2 3 26 26 H 1.09005 * 109.47038 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47090 * 305.00314 * 4 2 1 28 28 H 1.09000 * 109.47257 * 64.99991 * 4 2 1 29 29 H 0.96998 * 120.00148 * 0.02562 * 5 4 2 30 30 H 1.08004 * 119.15617 * 0.38405 * 9 8 6 31 31 H 1.09008 * 109.73645 * 285.60478 * 11 10 9 32 32 H 1.08992 * 109.74421 * 164.90147 * 11 10 9 33 33 H 1.08996 * 109.75467 * 182.22208 * 12 11 10 34 34 H 1.09000 * 109.75702 * 61.47590 * 12 11 10 35 35 H 1.09006 * 109.46294 * 265.45638 * 15 14 2 36 36 H 1.09000 * 109.46607 * 25.44888 * 15 14 2 37 37 H 1.08991 * 109.47283 * 145.45086 * 15 14 2 38 38 H 0.96998 * 120.00295 * 179.72193 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8264 -1.1905 6 6 4.1729 -1.4293 -2.1907 7 8 3.5676 -1.8860 -3.1429 8 6 5.6318 -1.5338 -2.1323 9 6 6.2830 -1.0201 -1.0801 10 8 7.6274 -1.0866 -0.9766 11 6 8.2952 -2.0286 -1.8243 12 6 7.7055 -1.9011 -3.2363 13 8 6.2962 -2.1466 -3.1513 14 7 2.0182 -0.6906 1.1962 15 6 1.6644 -2.0932 1.4280 16 6 2.8055 -0.0251 2.0976 17 1 3.3314 0.8694 1.7982 18 6 2.9276 -0.5002 3.3962 19 7 2.0719 -1.3888 3.8550 20 14 4.3110 0.1158 4.4899 21 1 3.8989 1.3848 5.1418 22 1 4.6096 -0.9009 5.5302 23 1 5.5242 0.3531 3.6671 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 1.6053 -1.7199 -1.2951 28 1 1.7516 -0.1584 -2.1370 29 1 3.9823 -0.4628 -0.4315 30 1 5.7176 -0.5444 -0.2924 31 1 8.1358 -3.0394 -1.4487 32 1 9.3625 -1.8088 -1.8499 33 1 8.1680 -2.6348 -3.8963 34 1 7.8822 -0.8963 -3.6200 35 1 0.7828 -2.1446 2.0671 36 1 1.4507 -2.5763 0.4746 37 1 2.4962 -2.6021 1.9148 38 1 2.1595 -1.7238 4.7611 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570694972.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:36 Heat of formation + Delta-G solvation = -61.985247 kcal Electronic energy + Delta-G solvation = -21574.646164 eV Core-core repulsion = 18226.684118 eV Total energy + Delta-G solvation = -3347.962046 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.03494 -39.05590 -37.09367 -36.54096 -33.92092 -32.55825 -31.53796 -29.47828 -28.78601 -26.05501 -25.77784 -25.06459 -23.09003 -21.57063 -19.56084 -19.27740 -18.27820 -18.01985 -16.95211 -16.36861 -15.53468 -15.38081 -15.11537 -14.85468 -14.58010 -14.20713 -14.10583 -13.76487 -13.40320 -12.77884 -12.73715 -12.39994 -12.24866 -11.93751 -11.46113 -11.13923 -11.06449 -10.86051 -10.76911 -10.67442 -10.45426 -10.31579 -9.91733 -9.81755 -9.60143 -8.65993 -8.59848 -8.11878 -6.86965 -5.79464 -3.24040 1.45424 2.79962 3.13387 3.33227 3.40218 3.41220 3.53545 4.01513 4.19148 4.42354 4.69585 4.79577 4.89035 5.17326 5.26412 5.33543 5.34799 5.37996 5.55024 5.87463 5.92136 6.09516 6.17089 6.29001 6.42130 6.71307 6.73835 6.82934 6.83942 7.00336 7.32482 7.36880 7.66453 7.75743 7.95895 8.30828 8.56311 9.15720 9.79926 10.28672 11.25119 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.016078 B = 0.006614 C = 0.004993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.104780 B = 4232.309883 C = 5606.611219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.157 3.843 3 H 0.070 0.930 4 C 0.109 3.891 5 N -0.698 5.698 6 C 0.570 3.430 7 O -0.541 6.541 8 C -0.072 4.072 9 C 0.009 3.991 10 O -0.300 6.300 11 C 0.013 3.987 12 C 0.019 3.981 13 O -0.288 6.288 14 N -0.594 5.594 15 C 0.164 3.836 16 C -0.265 4.265 17 H 0.070 0.930 18 C 0.006 3.994 19 N -0.901 5.901 20 Si 0.900 3.100 21 H -0.287 1.287 22 H -0.291 1.291 23 H -0.279 1.279 24 H 0.059 0.941 25 H 0.042 0.958 26 H 0.050 0.950 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.408 0.592 30 H 0.185 0.815 31 H 0.081 0.919 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.075 0.925 35 H 0.028 0.972 36 H 0.000 1.000 37 H 0.042 0.958 38 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.136 0.713 -10.189 13.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.048 3.952 3 H 0.088 0.912 4 C -0.016 4.016 5 N -0.352 5.352 6 C 0.357 3.643 7 O -0.420 6.420 8 C -0.120 4.120 9 C -0.057 4.057 10 O -0.212 6.212 11 C -0.063 4.063 12 C -0.058 4.058 13 O -0.201 6.201 14 N -0.318 5.318 15 C 0.019 3.981 16 C -0.395 4.395 17 H 0.088 0.912 18 C -0.193 4.193 19 N -0.545 5.545 20 Si 0.730 3.270 21 H -0.214 1.214 22 H -0.217 1.217 23 H -0.205 1.205 24 H 0.078 0.922 25 H 0.061 0.939 26 H 0.069 0.931 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.246 0.754 30 H 0.202 0.798 31 H 0.099 0.901 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.094 0.906 35 H 0.046 0.954 36 H 0.018 0.982 37 H 0.061 0.939 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 8.738 0.273 -10.692 13.811 hybrid contribution 1.051 0.335 1.144 1.589 sum 9.789 0.609 -9.548 13.688 Atomic orbital electron populations 1.22181 0.97302 1.01461 1.00647 1.20628 0.92733 0.95539 0.86311 0.91226 1.22016 0.78543 1.01621 0.99464 1.45732 1.08611 1.58359 1.22476 1.17088 0.84832 0.79112 0.83310 1.90796 1.69518 1.48192 1.33480 1.20482 0.93170 1.07755 0.90642 1.23359 0.83391 1.01838 0.97099 1.86111 1.17276 1.57598 1.60204 1.23709 0.98205 0.93771 0.90612 1.23630 0.80930 1.03612 0.97584 1.86414 1.20172 1.66966 1.46584 1.44029 1.58288 1.08096 1.21347 1.20735 0.99822 0.83311 0.94202 1.19186 1.20214 1.09560 0.90503 0.91220 1.24959 0.98413 0.99501 0.96456 1.70096 1.34955 1.33324 1.16119 0.86365 0.82240 0.77920 0.80511 1.21407 1.21660 1.20480 0.92160 0.93885 0.93098 0.91779 0.92120 0.75408 0.79798 0.90107 0.86299 0.86313 0.90647 0.95402 0.98174 0.93916 0.93681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 9.19 37.15 0.34 -2.35 16 2 C 0.16 2.93 2.87 -67.93 -0.19 2.74 16 3 H 0.07 1.28 7.85 -51.93 -0.41 0.87 16 4 C 0.11 1.92 4.93 -4.04 -0.02 1.90 16 5 N -0.70 -12.25 5.32 -61.71 -0.33 -12.58 16 6 C 0.57 10.63 7.73 -12.98 -0.10 10.53 16 7 O -0.54 -11.83 16.92 -10.05 -0.17 -12.00 16 8 C -0.07 -1.18 6.61 -37.81 -0.25 -1.43 16 9 C 0.01 0.14 10.58 29.23 0.31 0.45 16 10 O -0.30 -3.99 10.47 -30.83 -0.32 -4.31 16 11 C 0.01 0.12 7.30 37.44 0.27 0.39 16 12 C 0.02 0.19 7.31 37.44 0.27 0.46 16 13 O -0.29 -4.52 10.28 -45.74 -0.47 -4.99 16 14 N -0.59 -13.50 2.29 -173.49 -0.40 -13.89 16 15 C 0.16 3.87 8.01 59.85 0.48 4.35 16 16 C -0.27 -6.60 9.34 -15.06 -0.14 -6.74 16 17 H 0.07 1.65 7.81 -52.49 -0.41 1.24 16 18 C 0.01 0.16 5.05 -17.43 -0.09 0.07 16 19 N -0.90 -25.17 10.69 55.49 0.59 -24.57 16 20 Si 0.90 20.67 29.58 -169.99 -5.03 15.64 16 21 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 24 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 25 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.89 7.67 -51.93 -0.40 0.49 16 27 H 0.06 1.21 6.86 -51.93 -0.36 0.86 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.41 6.98 5.73 -40.82 -0.23 6.75 16 30 H 0.19 2.58 6.08 -52.48 -0.32 2.26 16 31 H 0.08 0.77 8.14 -51.92 -0.42 0.35 16 32 H 0.12 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.12 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.03 0.72 7.44 -51.93 -0.39 0.33 16 36 H 0.00 0.00 6.53 -51.93 -0.34 -0.34 16 37 H 0.04 1.09 7.17 -51.93 -0.37 0.72 16 38 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 314.23 15.07 4.74 4.74 Total: -1.00 -31.68 314.23 -5.82 -37.50 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -5.32 Total: 4.10 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: 0.88 Total: 10.37 kcal Atomic # 7 Polarization: -50.91 SS G_CDS: -0.13 Total: -51.05 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -0.96 Total: -21.30 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.03 Total: 15.64 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.68 -5.82 -37.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570694972.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.488 kcal (2) G-P(sol) polarization free energy of solvation -31.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds