Wall clock time and date at job start Mon Mar 30 2020 02:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08995 * 109.47158 * 2 1 4 4 C 1.53002 * 109.47189 * 239.99798 * 2 1 3 5 5 N 1.46501 * 109.46955 * 184.99985 * 4 2 1 6 6 C 1.34783 * 119.99476 * 179.97438 * 5 4 2 7 7 O 1.21727 * 120.00406 * 0.02562 * 6 5 4 8 8 C 1.46379 * 119.99586 * 179.97438 * 6 5 4 9 9 C 1.33978 * 119.23322 * 359.73485 * 8 6 5 10 10 O 1.35001 * 121.69002 * 180.11843 * 9 8 6 11 11 C 1.43240 * 116.82890 * 343.31805 * 10 9 8 12 12 C 1.53550 * 108.08882 * 45.24956 * 11 10 9 13 13 O 1.36209 * 119.23404 * 179.97438 * 8 6 5 14 14 N 1.46498 * 109.46877 * 119.99967 * 2 1 3 15 15 C 1.46504 * 120.00411 * 60.00474 * 14 2 1 16 16 C 1.36939 * 120.00069 * 239.99644 * 14 2 1 17 17 H 1.08002 * 119.99975 * 339.94161 * 16 14 2 18 18 C 1.38813 * 120.00425 * 159.93670 * 16 14 2 19 19 N 1.31624 * 119.99673 * 344.41302 * 18 16 14 20 20 Si 1.86791 * 120.00401 * 164.13730 * 18 16 14 21 21 H 1.48504 * 109.47298 * 84.87845 * 20 18 16 22 22 H 1.48496 * 109.47349 * 204.88146 * 20 18 16 23 23 H 1.48500 * 109.47219 * 324.87866 * 20 18 16 24 24 H 1.08998 * 109.47748 * 300.00135 * 1 2 3 25 25 H 1.09006 * 109.47132 * 60.00432 * 1 2 3 26 26 H 1.09005 * 109.47038 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47090 * 305.00314 * 4 2 1 28 28 H 1.09000 * 109.47257 * 64.99991 * 4 2 1 29 29 H 0.96998 * 120.00148 * 0.02562 * 5 4 2 30 30 H 1.08004 * 119.15617 * 0.38405 * 9 8 6 31 31 H 1.09008 * 109.73645 * 285.60478 * 11 10 9 32 32 H 1.08992 * 109.74421 * 164.90147 * 11 10 9 33 33 H 1.08996 * 109.75467 * 182.22208 * 12 11 10 34 34 H 1.09000 * 109.75702 * 61.47590 * 12 11 10 35 35 H 1.09006 * 109.46294 * 265.45638 * 15 14 2 36 36 H 1.09000 * 109.46607 * 25.44888 * 15 14 2 37 37 H 1.08991 * 109.47283 * 145.45086 * 15 14 2 38 38 H 0.96998 * 120.00295 * 179.72193 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8264 -1.1905 6 6 4.1729 -1.4293 -2.1907 7 8 3.5676 -1.8860 -3.1429 8 6 5.6318 -1.5338 -2.1323 9 6 6.2830 -1.0201 -1.0801 10 8 7.6274 -1.0866 -0.9766 11 6 8.2952 -2.0286 -1.8243 12 6 7.7055 -1.9011 -3.2363 13 8 6.2962 -2.1466 -3.1513 14 7 2.0182 -0.6906 1.1962 15 6 1.6644 -2.0932 1.4280 16 6 2.8055 -0.0251 2.0976 17 1 3.3314 0.8694 1.7982 18 6 2.9276 -0.5002 3.3962 19 7 2.0719 -1.3888 3.8550 20 14 4.3110 0.1158 4.4899 21 1 3.8989 1.3848 5.1418 22 1 4.6096 -0.9009 5.5302 23 1 5.5242 0.3531 3.6671 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 1.6053 -1.7199 -1.2951 28 1 1.7516 -0.1584 -2.1370 29 1 3.9823 -0.4628 -0.4315 30 1 5.7176 -0.5444 -0.2924 31 1 8.1358 -3.0394 -1.4487 32 1 9.3625 -1.8088 -1.8499 33 1 8.1680 -2.6348 -3.8963 34 1 7.8822 -0.8963 -3.6200 35 1 0.7828 -2.1446 2.0671 36 1 1.4507 -2.5763 0.4746 37 1 2.4962 -2.6021 1.9148 38 1 2.1595 -1.7238 4.7611 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570694972.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:35 Heat of formation + Delta-G solvation = -83.575836 kcal Electronic energy + Delta-G solvation = -21575.582402 eV Core-core repulsion = 18226.684118 eV Total energy + Delta-G solvation = -3348.898284 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.10469 -40.45035 -38.46792 -37.89135 -35.52926 -34.10009 -32.78338 -31.14169 -29.90390 -28.00095 -27.06856 -26.15105 -24.90619 -22.78907 -21.13417 -20.39930 -19.34902 -19.30298 -18.79581 -17.41268 -17.13112 -16.85408 -16.38762 -16.14330 -15.82172 -15.63418 -15.28402 -15.10981 -14.73318 -14.55293 -14.28880 -13.81827 -13.59124 -13.15029 -13.03370 -12.87122 -12.61343 -12.49703 -12.29781 -12.07866 -11.95381 -11.74939 -11.68179 -11.50000 -10.99880 -10.57600 -10.10701 -9.25668 -8.79117 -7.77228 -5.22322 0.23783 1.51852 1.54398 1.61100 1.66593 2.08399 2.25264 2.55217 2.82162 3.38195 3.40582 3.64993 3.75560 3.96459 3.99403 4.05358 4.26136 4.37097 4.43242 4.61280 4.62470 4.72694 4.77689 4.83398 4.95461 5.06772 5.25444 5.33906 5.43374 5.53215 5.70441 5.76415 5.77758 6.23163 6.36032 6.59425 7.14797 7.19927 7.91426 8.36793 9.26819 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.016078 B = 0.006614 C = 0.004993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.104780 B = 4232.309883 C = 5606.611219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.156 3.844 3 H 0.080 0.920 4 C 0.117 3.883 5 N -0.694 5.694 6 C 0.568 3.432 7 O -0.581 6.581 8 C -0.094 4.094 9 C 0.034 3.966 10 O -0.308 6.308 11 C 0.008 3.992 12 C 0.012 3.988 13 O -0.317 6.317 14 N -0.603 5.603 15 C 0.183 3.817 16 C -0.257 4.257 17 H 0.086 0.914 18 C -0.052 4.052 19 N -0.938 5.938 20 Si 0.959 3.041 21 H -0.288 1.288 22 H -0.305 1.305 23 H -0.262 1.262 24 H 0.042 0.958 25 H 0.077 0.923 26 H 0.043 0.957 27 H 0.050 0.950 28 H 0.079 0.921 29 H 0.411 0.589 30 H 0.188 0.812 31 H 0.082 0.918 32 H 0.160 0.840 33 H 0.151 0.849 34 H 0.084 0.916 35 H 0.000 1.000 36 H 0.019 0.981 37 H 0.015 0.985 38 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.971 1.811 -11.187 15.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.049 3.951 3 H 0.098 0.902 4 C -0.008 4.008 5 N -0.347 5.347 6 C 0.357 3.643 7 O -0.463 6.463 8 C -0.142 4.142 9 C -0.033 4.033 10 O -0.220 6.220 11 C -0.067 4.067 12 C -0.063 4.063 13 O -0.232 6.232 14 N -0.326 5.326 15 C 0.038 3.962 16 C -0.387 4.387 17 H 0.103 0.897 18 C -0.247 4.247 19 N -0.585 5.585 20 Si 0.788 3.212 21 H -0.216 1.216 22 H -0.232 1.232 23 H -0.187 1.187 24 H 0.062 0.938 25 H 0.096 0.904 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.097 0.903 29 H 0.249 0.751 30 H 0.204 0.796 31 H 0.100 0.900 32 H 0.177 0.823 33 H 0.168 0.832 34 H 0.102 0.898 35 H 0.018 0.982 36 H 0.037 0.963 37 H 0.034 0.966 38 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 10.600 1.408 -11.715 15.861 hybrid contribution 0.558 0.015 1.373 1.482 sum 11.158 1.423 -10.342 15.280 Atomic orbital electron populations 1.22071 0.95930 1.01308 1.01516 1.20806 0.93720 0.95695 0.84888 0.90182 1.21895 0.78655 1.00892 0.99398 1.45707 1.08572 1.58048 1.22362 1.17458 0.85972 0.78250 0.82651 1.90763 1.70568 1.50054 1.34963 1.20143 0.92124 1.09930 0.92029 1.23364 0.84139 0.99782 0.96047 1.86101 1.16386 1.58394 1.61076 1.24091 0.99863 0.93187 0.89547 1.24027 0.78347 1.05286 0.98591 1.86351 1.22919 1.67335 1.46621 1.44177 1.58455 1.07896 1.22080 1.20383 0.97459 0.84166 0.94170 1.19620 1.19443 1.09202 0.90443 0.89659 1.25670 1.00537 1.00402 0.98070 1.70266 1.36880 1.35400 1.15980 0.85415 0.80440 0.76656 0.78678 1.21552 1.23169 1.18656 0.93850 0.90374 0.93813 0.93170 0.90295 0.75097 0.79582 0.89967 0.82285 0.83168 0.89774 0.98157 0.96293 0.96596 0.94650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.89 9.19 71.98 0.66 -4.23 16 2 C 0.16 5.59 2.87 44.99 0.13 5.72 16 3 H 0.08 2.73 7.85 -2.39 -0.02 2.71 16 4 C 0.12 3.95 4.93 86.38 0.43 4.38 16 5 N -0.69 -23.63 5.32 -467.34 -2.49 -26.12 16 6 C 0.57 20.94 7.73 86.36 0.67 21.61 16 7 O -0.58 -25.49 16.92 10.11 0.17 -25.31 16 8 C -0.09 -2.98 6.61 23.42 0.15 -2.83 16 9 C 0.03 0.93 10.58 66.85 0.71 1.64 16 10 O -0.31 -7.37 10.47 -69.22 -0.72 -8.10 16 11 C 0.01 0.12 7.30 72.17 0.53 0.65 16 12 C 0.01 0.22 7.31 72.17 0.53 0.74 16 13 O -0.32 -9.62 10.28 -71.72 -0.74 -10.36 16 14 N -0.60 -27.01 2.29 -702.79 -1.61 -28.62 16 15 C 0.18 8.78 8.01 127.77 1.02 9.80 16 16 C -0.26 -12.53 9.34 84.03 0.79 -11.74 16 17 H 0.09 3.84 7.81 -2.91 -0.02 3.82 16 18 C -0.05 -2.70 5.05 84.86 0.43 -2.27 16 19 N -0.94 -53.54 10.69 21.65 0.23 -53.31 16 20 Si 0.96 42.30 29.58 68.60 2.03 44.33 16 21 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 22 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 23 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 24 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.08 2.02 8.14 -2.38 -0.02 2.01 16 26 H 0.04 1.49 7.67 -2.38 -0.02 1.47 16 27 H 0.05 1.86 6.86 -2.39 -0.02 1.84 16 28 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 29 H 0.41 13.49 5.73 -92.71 -0.53 12.96 16 30 H 0.19 4.90 6.08 -2.91 -0.02 4.88 16 31 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.16 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.15 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.00 0.01 7.44 -2.38 -0.02 -0.01 16 36 H 0.02 0.81 6.53 -2.39 -0.02 0.79 16 37 H 0.02 0.81 7.17 -2.39 -0.02 0.80 16 38 H 0.24 13.79 8.31 -92.71 -0.77 13.02 16 Total: -1.00 -69.03 314.23 3.45 -65.57 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: 0.54 Total: 18.44 kcal Atomic # 6 Polarization: 17.44 SS G_CDS: 6.04 Total: 23.47 kcal Atomic # 7 Polarization: -104.19 SS G_CDS: -3.86 Total: -108.05 kcal Atomic # 8 Polarization: -42.48 SS G_CDS: -1.29 Total: -43.77 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Total: -69.03 3.45 -65.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570694972.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.002 kcal (2) G-P(sol) polarization free energy of solvation -69.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds