Wall clock time and date at job start Mon Mar 30 2020 02:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46617 * 2 1 4 4 C 1.52999 * 109.47143 * 119.99657 * 2 1 3 5 5 N 1.46493 * 109.47493 * 175.00370 * 4 2 1 6 6 C 1.34771 * 120.00573 * 180.02562 * 5 4 2 7 7 O 1.21738 * 119.99857 * 0.02562 * 6 5 4 8 8 C 1.46377 * 120.00620 * 180.27400 * 6 5 4 9 9 C 1.33981 * 119.22735 * 359.45555 * 8 6 5 10 10 O 1.34999 * 121.68828 * 180.02562 * 9 8 6 11 11 C 1.43244 * 116.83039 * 343.35505 * 10 9 8 12 12 C 1.53545 * 108.09147 * 45.23846 * 11 10 9 13 13 O 1.36210 * 119.23531 * 179.72266 * 8 6 5 14 14 N 1.46495 * 109.47414 * 240.00017 * 2 1 3 15 15 C 1.46502 * 120.00229 * 299.99754 * 14 2 1 16 16 C 1.36938 * 119.99859 * 119.99907 * 14 2 1 17 17 H 1.07995 * 120.00125 * 22.82211 * 16 14 2 18 18 C 1.38816 * 119.99476 * 202.82105 * 16 14 2 19 19 N 1.31613 * 120.00653 * 11.58760 * 18 16 14 20 20 Si 1.86806 * 119.99426 * 191.58846 * 18 16 14 21 21 H 1.48496 * 109.47358 * 60.00218 * 20 18 16 22 22 H 1.48505 * 109.46921 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47142 * 299.99822 * 20 18 16 24 24 H 1.08995 * 109.47605 * 299.99990 * 1 2 3 25 25 H 1.09004 * 109.46779 * 60.00152 * 1 2 3 26 26 H 1.09000 * 109.46617 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47096 * 55.00143 * 4 2 1 28 28 H 1.09000 * 109.47394 * 295.00897 * 4 2 1 29 29 H 0.97005 * 119.99564 * 359.97438 * 5 4 2 30 30 H 1.08003 * 119.15630 * 0.36732 * 9 8 6 31 31 H 1.09005 * 109.73771 * 285.58297 * 11 10 9 32 32 H 1.09003 * 109.73906 * 164.88929 * 11 10 9 33 33 H 1.08997 * 109.75499 * 182.22030 * 12 11 10 34 34 H 1.08999 * 109.79952 * 61.49492 * 12 11 10 35 35 H 1.09001 * 109.46628 * 93.84801 * 15 14 2 36 36 H 1.08990 * 109.47459 * 213.85502 * 15 14 2 37 37 H 1.09001 * 109.46701 * 333.85833 * 15 14 2 38 38 H 0.96997 * 120.00591 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1907 6 6 4.1730 -1.4290 2.1908 7 8 3.5676 -1.8865 3.1427 8 6 5.6323 -1.5287 2.1352 9 6 6.2826 -1.0252 1.0775 10 8 7.6271 -1.0903 0.9748 11 6 8.3541 -1.3764 2.1755 12 6 7.6483 -2.5342 2.8958 13 8 6.2970 -2.1360 3.1573 14 7 2.0184 -0.6906 -1.1961 15 6 1.6646 -2.0932 -1.4280 16 6 2.8057 -0.0250 -2.0975 17 1 3.3666 0.8438 -1.7864 18 6 2.8827 -0.4672 -3.4110 19 7 2.0369 -1.3746 -3.8507 20 14 4.1872 0.2257 -4.5547 21 1 5.5345 -0.0608 -4.0001 22 1 4.0578 -0.4051 -5.8929 23 1 4.0056 1.6942 -4.6806 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 1.6054 -1.7198 1.2952 28 1 1.7516 -0.1583 2.1370 29 1 3.9824 -0.4627 0.4317 30 1 5.7171 -0.5502 0.2894 31 1 8.3657 -0.4956 2.8176 32 1 9.3755 -1.6652 1.9274 33 1 8.1576 -2.7489 3.8352 34 1 7.6541 -3.4214 2.2626 35 1 0.7758 -2.1444 -2.0569 36 1 2.4918 -2.5991 -1.9258 37 1 1.4628 -2.5795 -0.4736 38 1 2.0909 -1.6839 -4.7685 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570694974.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:39 Heat of formation + Delta-G solvation = -62.371347 kcal Electronic energy + Delta-G solvation = -21560.124582 eV Core-core repulsion = 18212.145794 eV Total energy + Delta-G solvation = -3347.978788 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.03701 -39.05535 -37.09317 -36.53379 -33.91778 -32.55472 -31.53559 -29.47512 -28.78527 -26.04631 -25.77660 -25.06559 -23.08084 -21.57007 -19.55598 -19.28070 -18.28188 -18.02241 -16.95313 -16.34936 -15.58781 -15.25579 -15.21869 -14.88278 -14.48374 -14.19845 -14.16217 -13.77756 -13.38506 -12.78964 -12.72114 -12.42369 -12.19876 -11.94955 -11.44281 -11.13744 -11.05286 -10.83241 -10.77338 -10.69055 -10.43918 -10.31356 -9.93148 -9.81626 -9.60249 -8.66271 -8.59746 -8.11915 -6.83578 -5.78593 -3.26592 1.45758 2.78450 3.12912 3.33790 3.39421 3.40719 3.55518 4.00482 4.19045 4.42209 4.68830 4.79750 4.88713 5.17035 5.26474 5.33795 5.34804 5.40044 5.55447 5.87875 5.92338 6.10091 6.17966 6.29744 6.43046 6.71494 6.74588 6.84293 6.84604 7.01000 7.32558 7.37936 7.67378 7.76742 7.95781 8.32833 8.56299 9.16894 9.79833 10.29617 11.25653 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.016192 B = 0.006497 C = 0.004962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.848802 B = 4308.463371 C = 5641.347115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.157 3.843 3 H 0.069 0.931 4 C 0.109 3.891 5 N -0.698 5.698 6 C 0.570 3.430 7 O -0.541 6.541 8 C -0.072 4.072 9 C 0.009 3.991 10 O -0.299 6.299 11 C 0.013 3.987 12 C 0.018 3.982 13 O -0.288 6.288 14 N -0.594 5.594 15 C 0.165 3.835 16 C -0.266 4.266 17 H 0.069 0.931 18 C 0.008 3.992 19 N -0.902 5.902 20 Si 0.902 3.098 21 H -0.283 1.283 22 H -0.291 1.291 23 H -0.283 1.283 24 H 0.042 0.958 25 H 0.059 0.941 26 H 0.050 0.950 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.408 0.592 30 H 0.185 0.815 31 H 0.080 0.920 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.076 0.924 35 H 0.027 0.973 36 H 0.043 0.957 37 H -0.002 1.002 38 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.199 0.768 10.128 13.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.048 3.952 3 H 0.088 0.912 4 C -0.017 4.017 5 N -0.352 5.352 6 C 0.357 3.643 7 O -0.420 6.420 8 C -0.120 4.120 9 C -0.057 4.057 10 O -0.212 6.212 11 C -0.062 4.062 12 C -0.058 4.058 13 O -0.201 6.201 14 N -0.318 5.318 15 C 0.020 3.980 16 C -0.395 4.395 17 H 0.086 0.914 18 C -0.192 4.192 19 N -0.546 5.546 20 Si 0.731 3.269 21 H -0.209 1.209 22 H -0.217 1.217 23 H -0.209 1.209 24 H 0.061 0.939 25 H 0.078 0.922 26 H 0.069 0.931 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.246 0.754 30 H 0.202 0.798 31 H 0.098 0.902 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.095 0.905 35 H 0.046 0.954 36 H 0.062 0.938 37 H 0.017 0.983 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.790 0.335 10.623 13.792 hybrid contribution 1.019 0.362 -1.165 1.589 sum 9.809 0.696 9.458 13.644 Atomic orbital electron populations 1.22175 0.97306 1.01445 1.00627 1.20637 0.92729 0.95531 0.86325 0.91239 1.22017 0.78525 1.01627 0.99494 1.45728 1.08632 1.58385 1.22413 1.17088 0.84798 0.79165 0.83296 1.90800 1.69554 1.48180 1.33455 1.20482 0.92927 1.05409 0.93224 1.23355 0.83150 0.99689 0.99491 1.86121 1.16209 1.85276 1.33567 1.23699 0.96598 0.98983 0.86937 1.23633 0.82263 0.96924 1.03018 1.86400 1.25213 1.74132 1.34398 1.43988 1.58204 1.08063 1.21497 1.20734 0.99859 0.83304 0.94092 1.19149 1.19399 1.11541 0.89443 0.91371 1.25038 0.98315 0.99185 0.96630 1.70054 1.35958 1.32781 1.15833 0.86393 0.81621 0.78545 0.80292 1.20893 1.21674 1.20949 0.93907 0.92164 0.93109 0.91791 0.92116 0.75440 0.79808 0.90220 0.86306 0.86309 0.90544 0.95426 0.93847 0.98326 0.93613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 9.20 37.16 0.34 -2.36 16 2 C 0.16 2.94 2.87 -67.93 -0.19 2.75 16 3 H 0.07 1.28 7.86 -51.93 -0.41 0.87 16 4 C 0.11 1.92 4.93 -4.05 -0.02 1.90 16 5 N -0.70 -12.25 5.32 -61.71 -0.33 -12.58 16 6 C 0.57 10.63 7.73 -12.99 -0.10 10.53 16 7 O -0.54 -11.84 16.92 -10.06 -0.17 -12.01 16 8 C -0.07 -1.17 6.61 -37.81 -0.25 -1.42 16 9 C 0.01 0.14 10.58 29.24 0.31 0.45 16 10 O -0.30 -3.97 10.47 -30.82 -0.32 -4.29 16 11 C 0.01 0.13 7.30 37.44 0.27 0.40 16 12 C 0.02 0.18 7.31 37.44 0.27 0.46 16 13 O -0.29 -4.51 10.28 -45.74 -0.47 -4.98 16 14 N -0.59 -13.52 2.29 -173.49 -0.40 -13.92 16 15 C 0.16 3.89 8.00 59.85 0.48 4.37 16 16 C -0.27 -6.61 9.32 -15.06 -0.14 -6.75 16 17 H 0.07 1.61 7.81 -52.49 -0.41 1.20 16 18 C 0.01 0.20 5.12 -17.43 -0.09 0.11 16 19 N -0.90 -25.20 10.63 55.49 0.59 -24.61 16 20 Si 0.90 20.69 29.57 -169.99 -5.03 15.66 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 26 H 0.05 0.90 7.67 -51.93 -0.40 0.50 16 27 H 0.06 1.21 6.87 -51.93 -0.36 0.86 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.41 6.97 5.73 -40.82 -0.23 6.73 16 30 H 0.19 2.56 6.08 -52.48 -0.32 2.24 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.12 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.12 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.03 0.71 7.43 -51.93 -0.39 0.33 16 36 H 0.04 1.11 7.20 -51.93 -0.37 0.74 16 37 H 0.00 -0.04 6.53 -51.93 -0.34 -0.38 16 38 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 314.24 15.07 4.74 4.74 Total: -1.00 -31.68 314.24 -5.83 -37.51 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -5.32 Total: 4.05 kcal Atomic # 6 Polarization: 9.55 SS G_CDS: 0.88 Total: 10.43 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: -0.13 Total: -51.10 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -0.96 Total: -21.29 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.03 Total: 15.66 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.68 -5.83 -37.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570694974.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.864 kcal (2) G-P(sol) polarization free energy of solvation -31.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds