Wall clock time and date at job start Mon Mar 30 2020 02:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46617 * 2 1 4 4 C 1.52999 * 109.47143 * 119.99657 * 2 1 3 5 5 N 1.46493 * 109.47493 * 175.00370 * 4 2 1 6 6 C 1.34771 * 120.00573 * 180.02562 * 5 4 2 7 7 O 1.21738 * 119.99857 * 0.02562 * 6 5 4 8 8 C 1.46377 * 120.00620 * 180.27400 * 6 5 4 9 9 C 1.33981 * 119.22735 * 359.45555 * 8 6 5 10 10 O 1.34999 * 121.68828 * 180.02562 * 9 8 6 11 11 C 1.43244 * 116.83039 * 343.35505 * 10 9 8 12 12 C 1.53545 * 108.09147 * 45.23846 * 11 10 9 13 13 O 1.36210 * 119.23531 * 179.72266 * 8 6 5 14 14 N 1.46495 * 109.47414 * 240.00017 * 2 1 3 15 15 C 1.46502 * 120.00229 * 299.99754 * 14 2 1 16 16 C 1.36938 * 119.99859 * 119.99907 * 14 2 1 17 17 H 1.07995 * 120.00125 * 22.82211 * 16 14 2 18 18 C 1.38816 * 119.99476 * 202.82105 * 16 14 2 19 19 N 1.31613 * 120.00653 * 11.58760 * 18 16 14 20 20 Si 1.86806 * 119.99426 * 191.58846 * 18 16 14 21 21 H 1.48496 * 109.47358 * 60.00218 * 20 18 16 22 22 H 1.48505 * 109.46921 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47142 * 299.99822 * 20 18 16 24 24 H 1.08995 * 109.47605 * 299.99990 * 1 2 3 25 25 H 1.09004 * 109.46779 * 60.00152 * 1 2 3 26 26 H 1.09000 * 109.46617 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47096 * 55.00143 * 4 2 1 28 28 H 1.09000 * 109.47394 * 295.00897 * 4 2 1 29 29 H 0.97005 * 119.99564 * 359.97438 * 5 4 2 30 30 H 1.08003 * 119.15630 * 0.36732 * 9 8 6 31 31 H 1.09005 * 109.73771 * 285.58297 * 11 10 9 32 32 H 1.09003 * 109.73906 * 164.88929 * 11 10 9 33 33 H 1.08997 * 109.75499 * 182.22030 * 12 11 10 34 34 H 1.08999 * 109.79952 * 61.49492 * 12 11 10 35 35 H 1.09001 * 109.46628 * 93.84801 * 15 14 2 36 36 H 1.08990 * 109.47459 * 213.85502 * 15 14 2 37 37 H 1.09001 * 109.46701 * 333.85833 * 15 14 2 38 38 H 0.96997 * 120.00591 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1907 6 6 4.1730 -1.4290 2.1908 7 8 3.5676 -1.8865 3.1427 8 6 5.6323 -1.5287 2.1352 9 6 6.2826 -1.0252 1.0775 10 8 7.6271 -1.0903 0.9748 11 6 8.3541 -1.3764 2.1755 12 6 7.6483 -2.5342 2.8958 13 8 6.2970 -2.1360 3.1573 14 7 2.0184 -0.6906 -1.1961 15 6 1.6646 -2.0932 -1.4280 16 6 2.8057 -0.0250 -2.0975 17 1 3.3666 0.8438 -1.7864 18 6 2.8827 -0.4672 -3.4110 19 7 2.0369 -1.3746 -3.8507 20 14 4.1872 0.2257 -4.5547 21 1 5.5345 -0.0608 -4.0001 22 1 4.0578 -0.4051 -5.8929 23 1 4.0056 1.6942 -4.6806 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 1.6054 -1.7198 1.2952 28 1 1.7516 -0.1583 2.1370 29 1 3.9824 -0.4627 0.4317 30 1 5.7171 -0.5502 0.2894 31 1 8.3657 -0.4956 2.8176 32 1 9.3755 -1.6652 1.9274 33 1 8.1576 -2.7489 3.8352 34 1 7.6541 -3.4214 2.2626 35 1 0.7758 -2.1444 -2.0569 36 1 2.4918 -2.5991 -1.9258 37 1 1.4628 -2.5795 -0.4736 38 1 2.0909 -1.6839 -4.7685 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570694974.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:38 Heat of formation + Delta-G solvation = -83.962047 kcal Electronic energy + Delta-G solvation = -21561.060825 eV Core-core repulsion = 18212.145794 eV Total energy + Delta-G solvation = -3348.915031 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.10555 -40.45055 -38.46226 -37.89167 -35.52767 -34.09721 -32.78263 -31.14029 -29.90293 -27.99544 -27.06921 -26.15270 -24.89922 -22.78977 -21.13237 -20.40172 -19.35463 -19.30529 -18.79085 -17.40119 -17.15235 -16.76894 -16.55353 -16.04612 -15.80639 -15.61802 -15.30450 -15.12511 -14.75141 -14.54262 -14.24824 -13.87307 -13.54553 -13.15932 -13.01416 -12.84191 -12.60912 -12.49895 -12.29947 -12.09210 -11.95162 -11.76953 -11.68033 -11.49627 -11.00238 -10.57815 -10.10812 -9.25623 -8.75668 -7.76472 -5.25012 0.24266 1.53218 1.54403 1.59763 1.63613 2.12605 2.23923 2.54946 2.81382 3.39287 3.40695 3.65749 3.75689 3.96380 3.99307 4.05467 4.26242 4.37367 4.43133 4.61527 4.62364 4.73182 4.78107 4.83546 4.95856 5.07228 5.25880 5.34068 5.43863 5.53281 5.70931 5.76775 5.78269 6.23221 6.37668 6.59208 7.14761 7.20844 7.91275 8.37590 9.27155 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.016192 B = 0.006497 C = 0.004962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.848802 B = 4308.463371 C = 5641.347115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.156 3.844 3 H 0.080 0.920 4 C 0.117 3.883 5 N -0.694 5.694 6 C 0.568 3.432 7 O -0.581 6.581 8 C -0.095 4.095 9 C 0.035 3.965 10 O -0.309 6.309 11 C 0.010 3.990 12 C 0.010 3.990 13 O -0.316 6.316 14 N -0.603 5.603 15 C 0.184 3.816 16 C -0.259 4.259 17 H 0.085 0.915 18 C -0.050 4.050 19 N -0.939 5.939 20 Si 0.962 3.038 21 H -0.273 1.273 22 H -0.305 1.305 23 H -0.277 1.277 24 H 0.077 0.923 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.050 0.950 28 H 0.079 0.921 29 H 0.410 0.590 30 H 0.188 0.812 31 H 0.090 0.910 32 H 0.157 0.843 33 H 0.153 0.847 34 H 0.076 0.924 35 H 0.000 1.000 36 H 0.016 0.984 37 H 0.017 0.983 38 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.031 1.928 11.077 15.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.049 3.951 3 H 0.098 0.902 4 C -0.009 4.009 5 N -0.347 5.347 6 C 0.357 3.643 7 O -0.464 6.464 8 C -0.143 4.143 9 C -0.032 4.032 10 O -0.221 6.221 11 C -0.065 4.065 12 C -0.065 4.065 13 O -0.231 6.231 14 N -0.326 5.326 15 C 0.039 3.961 16 C -0.389 4.389 17 H 0.102 0.898 18 C -0.245 4.245 19 N -0.586 5.586 20 Si 0.791 3.209 21 H -0.199 1.199 22 H -0.232 1.232 23 H -0.202 1.202 24 H 0.096 0.904 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.097 0.903 29 H 0.249 0.751 30 H 0.204 0.796 31 H 0.109 0.891 32 H 0.175 0.825 33 H 0.170 0.830 34 H 0.094 0.906 35 H 0.018 0.982 36 H 0.034 0.966 37 H 0.035 0.965 38 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 10.649 1.531 11.594 15.817 hybrid contribution 0.534 0.012 -1.380 1.480 sum 11.183 1.543 10.214 15.224 Atomic orbital electron populations 1.22065 0.95948 1.01281 1.01491 1.20808 0.93711 0.95681 0.84898 0.90207 1.21894 0.78654 1.00885 0.99423 1.45701 1.08581 1.58095 1.22294 1.17459 0.85942 0.78292 0.82638 1.90765 1.70604 1.50064 1.34941 1.20143 0.91879 1.07754 0.94551 1.23361 0.83955 0.97605 0.98292 1.86107 1.15404 1.84763 1.35813 1.24094 0.97573 0.99093 0.85705 1.24021 0.80211 0.97133 1.05118 1.86341 1.27639 1.74434 1.34681 1.44132 1.58376 1.07865 1.22250 1.20379 0.97480 0.84177 0.94047 1.19587 1.18734 1.11077 0.89460 0.89773 1.25750 1.00332 1.00110 0.98339 1.70232 1.37981 1.34816 1.15552 0.85427 0.79813 0.77905 0.77797 1.19866 1.23229 1.20245 0.90392 0.93865 0.93838 0.93201 0.90301 0.75116 0.79582 0.89140 0.82522 0.82955 0.90563 0.98153 0.96556 0.96482 0.94612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.91 9.20 71.98 0.66 -4.25 16 2 C 0.16 5.62 2.87 44.99 0.13 5.75 16 3 H 0.08 2.73 7.86 -2.39 -0.02 2.72 16 4 C 0.12 3.96 4.93 86.38 0.43 4.39 16 5 N -0.69 -23.67 5.32 -467.37 -2.49 -26.15 16 6 C 0.57 20.98 7.73 86.36 0.67 21.64 16 7 O -0.58 -25.55 16.92 10.08 0.17 -25.38 16 8 C -0.09 -3.01 6.61 23.42 0.15 -2.86 16 9 C 0.04 0.96 10.58 66.85 0.71 1.67 16 10 O -0.31 -7.38 10.47 -69.21 -0.72 -8.10 16 11 C 0.01 0.15 7.30 72.17 0.53 0.68 16 12 C 0.01 0.18 7.31 72.17 0.53 0.71 16 13 O -0.32 -9.59 10.28 -71.72 -0.74 -10.33 16 14 N -0.60 -27.09 2.29 -702.79 -1.61 -28.70 16 15 C 0.18 8.85 8.00 127.77 1.02 9.87 16 16 C -0.26 -12.61 9.32 84.03 0.78 -11.83 16 17 H 0.08 3.78 7.81 -2.91 -0.02 3.76 16 18 C -0.05 -2.62 5.12 84.86 0.43 -2.18 16 19 N -0.94 -53.56 10.63 21.65 0.23 -53.33 16 20 Si 0.96 42.35 29.57 68.60 2.03 44.38 16 21 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 22 H -0.31 -14.08 7.11 99.48 0.71 -13.37 16 23 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 24 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 25 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.04 1.49 7.67 -2.39 -0.02 1.47 16 27 H 0.05 1.85 6.87 -2.38 -0.02 1.84 16 28 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 29 H 0.41 13.49 5.73 -92.70 -0.53 12.96 16 30 H 0.19 4.88 6.08 -2.91 -0.02 4.86 16 31 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 32 H 0.16 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.15 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.00 0.01 7.43 -2.39 -0.02 -0.01 16 36 H 0.02 0.84 7.20 -2.39 -0.02 0.82 16 37 H 0.02 0.73 6.53 -2.39 -0.02 0.72 16 38 H 0.24 13.83 8.31 -92.71 -0.77 13.06 16 Total: -1.00 -69.04 314.24 3.45 -65.59 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: 0.54 Total: 18.43 kcal Atomic # 6 Polarization: 17.55 SS G_CDS: 6.04 Total: 23.59 kcal Atomic # 7 Polarization: -104.32 SS G_CDS: -3.86 Total: -108.18 kcal Atomic # 8 Polarization: -42.52 SS G_CDS: -1.29 Total: -43.81 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -69.04 3.45 -65.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570694974.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.372 kcal (2) G-P(sol) polarization free energy of solvation -69.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds