Wall clock time and date at job start Mon Mar 30 2020 00:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50701 * 109.54598 * 2 1 4 4 O 1.21281 * 119.99843 * 95.10558 * 3 2 1 5 5 N 1.34776 * 119.99826 * 275.11249 * 3 2 1 6 6 C 1.47064 * 136.06151 * 359.62217 * 5 3 2 7 7 C 1.53755 * 87.89135 * 152.96540 * 6 5 3 8 8 O 1.42900 * 114.39511 * 272.67971 * 7 6 5 9 9 C 1.50699 * 114.26747 * 139.79281 * 7 6 5 10 10 H 1.07998 * 119.99764 * 266.47248 * 9 7 6 11 11 C 1.37871 * 119.99982 * 86.47936 * 9 7 6 12 12 N 1.31515 * 119.99967 * 179.97438 * 11 9 7 13 13 Si 1.86806 * 120.00112 * 359.97438 * 11 9 7 14 14 H 1.48498 * 109.46850 * 90.00203 * 13 11 9 15 15 H 1.48500 * 109.47376 * 210.00128 * 13 11 9 16 16 H 1.48500 * 109.47113 * 330.00625 * 13 11 9 17 17 C 1.47065 * 136.05484 * 179.97438 * 5 3 2 18 18 C 1.53100 * 109.50595 * 120.10878 * 2 1 3 19 19 N 1.47019 * 109.25704 * 176.78310 * 18 2 1 20 20 C 1.47020 * 110.75264 * 301.38474 * 19 18 2 21 21 C 1.53097 * 109.25766 * 58.61733 * 20 19 18 22 22 O 1.43020 * 109.25737 * 303.14827 * 21 20 19 23 23 H 1.09005 * 109.47391 * 299.89054 * 1 2 3 24 24 H 1.09002 * 109.47517 * 59.89170 * 1 2 3 25 25 H 1.08999 * 109.47126 * 179.89266 * 1 2 3 26 26 H 1.09000 * 113.46779 * 267.70028 * 6 5 3 27 27 H 1.09002 * 113.46437 * 38.13952 * 6 5 3 28 28 H 0.96700 * 114.00307 * 273.58673 * 8 7 6 29 29 H 0.97005 * 120.00060 * 179.97438 * 12 11 9 30 30 H 1.09003 * 113.47185 * 321.87076 * 17 5 3 31 31 H 1.09004 * 113.46492 * 92.24443 * 17 5 3 32 32 H 1.09003 * 109.50332 * 56.85040 * 18 2 1 33 33 H 1.08999 * 109.50861 * 296.71513 * 18 2 1 34 34 H 1.00901 * 110.99924 * 65.15782 * 19 18 2 35 35 H 1.08999 * 109.50381 * 178.55170 * 20 19 18 36 36 H 1.08999 * 109.50587 * 298.68495 * 20 19 18 37 37 H 1.09002 * 109.50543 * 183.21902 * 21 20 19 38 38 H 1.08993 * 109.50810 * 63.08176 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0341 1.4202 0.0000 4 8 2.3251 1.9603 1.0462 5 7 2.1616 2.0900 -1.1626 6 6 1.9295 1.7964 -2.5848 7 6 1.6920 3.3005 -2.7980 8 8 0.3441 3.7219 -2.5797 9 6 2.2888 3.8477 -4.0689 10 1 3.2759 4.2858 -4.0570 11 6 1.5746 3.7893 -5.2468 12 7 2.0953 4.2674 -6.3559 13 14 -0.1325 3.0312 -5.2675 14 1 -1.1446 4.0833 -4.9957 15 1 -0.3905 2.4285 -6.6000 16 1 -0.2196 1.9791 -4.2231 17 6 2.5998 3.4341 -1.5677 18 6 2.0411 -0.7239 1.2484 19 7 3.5093 -0.7885 1.2045 20 6 3.9639 -1.4884 -0.0058 21 6 3.4334 -0.7568 -1.2416 22 8 2.0075 -0.6763 -1.1662 23 1 -0.3634 0.5121 0.8910 24 1 -0.3634 0.5155 -0.8890 25 1 -0.3633 -1.0276 -0.0019 26 1 2.8129 1.4192 -3.0999 27 1 1.0441 1.1861 -2.7632 28 1 -0.2254 3.6366 -3.3565 29 1 1.5930 4.2259 -7.1847 30 1 2.2856 4.2189 -0.8796 31 1 3.6603 3.4891 -1.8135 32 1 1.6331 -1.7343 1.2759 33 1 1.7273 -0.1795 2.1390 34 1 3.9136 0.1342 1.2620 35 1 5.0535 -1.5021 -0.0307 36 1 3.5865 -2.5110 0.0017 37 1 3.7200 -1.3042 -2.1396 38 1 3.8533 0.2483 -1.2777 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001576329986.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:33 Heat of formation + Delta-G solvation = -63.853325 kcal Electronic energy + Delta-G solvation = -22696.732098 eV Core-core repulsion = 19348.689047 eV Total energy + Delta-G solvation = -3348.043052 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.89826 -39.09617 -37.38272 -34.87571 -34.36238 -32.92711 -32.59808 -29.18250 -28.20632 -25.88678 -25.31308 -25.16065 -23.05636 -22.02164 -20.10992 -18.52277 -17.71029 -17.01753 -16.52423 -16.46845 -15.91922 -15.37569 -15.29919 -14.88147 -14.41520 -13.83462 -13.68801 -13.26945 -13.12629 -12.81146 -12.66356 -12.48631 -12.25617 -12.15972 -12.03532 -11.92057 -11.42236 -11.19944 -11.09399 -11.00817 -10.72842 -10.57857 -10.15424 -9.65675 -9.28813 -9.08947 -8.73380 -8.30398 -8.13716 -6.47597 -4.53891 2.79040 2.95551 3.00454 3.11353 3.17779 3.65577 3.98400 4.13282 4.47919 4.56150 4.69547 4.92360 4.96337 5.01712 5.10409 5.27682 5.36669 5.52366 5.55780 5.67741 5.69454 5.75074 5.84120 5.90975 6.07375 6.11333 6.22706 6.29575 6.37076 6.53552 6.75476 6.98575 7.13266 7.18335 7.95179 8.18202 8.41341 8.46573 8.55359 9.09819 10.64399 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.028002 B = 0.006447 C = 0.006401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.680881 B = 4341.869296 C = 4373.310360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.067 3.933 3 C 0.515 3.485 4 O -0.555 6.555 5 N -0.623 5.623 6 C 0.073 3.927 7 C 0.194 3.806 8 O -0.550 6.550 9 C -0.534 4.534 10 H 0.092 0.908 11 C 0.081 3.919 12 N -0.874 5.874 13 Si 0.858 3.142 14 H -0.266 1.266 15 H -0.283 1.283 16 H -0.256 1.256 17 C 0.118 3.882 18 C 0.051 3.949 19 N -0.682 5.682 20 C 0.020 3.980 21 C 0.013 3.987 22 O -0.357 6.357 23 H 0.078 0.922 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.091 0.909 27 H 0.068 0.932 28 H 0.352 0.648 29 H 0.272 0.728 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.350 0.650 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.104 0.896 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.548 -10.887 8.225 13.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.023 3.977 3 C 0.303 3.697 4 O -0.435 6.435 5 N -0.356 5.356 6 C -0.050 4.050 7 C 0.153 3.847 8 O -0.362 6.362 9 C -0.572 4.572 10 H 0.110 0.890 11 C -0.125 4.125 12 N -0.510 5.510 13 Si 0.687 3.313 14 H -0.193 1.193 15 H -0.209 1.209 16 H -0.181 1.181 17 C -0.004 4.004 18 C -0.079 4.079 19 N -0.312 5.312 20 C -0.110 4.110 21 C -0.065 4.065 22 O -0.276 6.276 23 H 0.096 0.904 24 H 0.090 0.910 25 H 0.093 0.907 26 H 0.109 0.891 27 H 0.086 0.914 28 H 0.205 0.795 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.112 0.888 32 H 0.106 0.894 33 H 0.114 0.886 34 H 0.169 0.831 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.122 0.878 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.274 -11.205 9.614 14.766 hybrid contribution -1.071 0.270 -1.433 1.809 sum -1.345 -10.935 8.180 13.722 Atomic orbital electron populations 1.21675 0.90196 1.03475 1.03754 1.22514 0.97446 0.88636 0.89130 1.20636 0.78606 0.87950 0.82484 1.90665 1.52400 1.69794 1.30666 1.49727 1.62699 1.16740 1.06405 1.24445 1.01192 1.01765 0.77572 1.20315 0.80698 0.89571 0.94109 1.86461 1.21856 1.88044 1.39805 1.21121 1.05059 1.41193 0.89816 0.88988 1.24994 0.97857 0.94071 0.95540 1.69847 1.37943 1.43479 0.99691 0.87327 0.85127 0.80559 0.78299 1.19274 1.20916 1.18149 1.23207 0.99109 0.83488 0.94639 1.22485 0.88336 1.00737 0.96355 1.60838 1.07297 1.25138 1.37928 1.22695 1.00971 0.99004 0.88348 1.23419 0.81837 1.00977 1.00274 1.88140 1.20845 1.77007 1.41605 0.90351 0.91028 0.90692 0.89132 0.91367 0.79548 0.91807 0.90956 0.88820 0.89359 0.88624 0.83129 0.89607 0.89863 0.87785 0.92577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.83 8.83 37.15 0.33 -1.50 16 2 C 0.07 1.03 0.99 -91.72 -0.09 0.94 16 3 C 0.52 9.62 5.22 -10.99 -0.06 9.56 16 4 O -0.56 -11.53 16.04 5.56 0.09 -11.44 16 5 N -0.62 -12.24 3.06 -185.08 -0.57 -12.80 16 6 C 0.07 1.47 5.42 -8.38 -0.05 1.43 16 7 C 0.19 4.38 1.10 -91.13 -0.10 4.28 16 8 O -0.55 -12.90 13.33 -35.23 -0.47 -13.37 16 9 C -0.53 -13.59 9.28 -34.44 -0.32 -13.91 16 10 H 0.09 2.49 8.06 -52.49 -0.42 2.07 16 11 C 0.08 2.10 5.47 -17.82 -0.10 2.01 16 12 N -0.87 -24.14 13.96 55.43 0.77 -23.37 16 13 Si 0.86 18.84 24.42 -169.99 -4.15 14.69 16 14 H -0.27 -5.70 7.06 56.52 0.40 -5.30 16 15 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 16 H -0.26 -5.35 5.50 56.52 0.31 -5.04 16 17 C 0.12 2.42 8.02 -8.53 -0.07 2.35 16 18 C 0.05 0.69 5.17 -3.71 -0.02 0.67 16 19 N -0.68 -9.15 6.88 -113.49 -0.78 -9.93 16 20 C 0.02 0.23 6.76 -3.71 -0.03 0.20 16 21 C 0.01 0.18 6.24 37.21 0.23 0.41 16 22 O -0.36 -5.48 8.82 -35.23 -0.31 -5.80 16 23 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 24 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 25 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.09 1.75 8.10 -51.93 -0.42 1.33 16 27 H 0.07 1.38 7.05 -51.93 -0.37 1.02 16 28 H 0.35 7.90 3.16 45.56 0.14 8.05 16 29 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 30 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 31 H 0.09 1.78 8.10 -51.93 -0.42 1.36 16 32 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.10 1.31 7.76 -51.93 -0.40 0.91 16 34 H 0.35 5.21 7.48 -39.29 -0.29 4.92 16 35 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.06 0.84 6.52 -51.93 -0.34 0.50 16 LS Contribution 298.37 15.07 4.50 4.50 Total: -1.00 -29.05 298.37 -6.31 -35.37 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: -5.13 Total: 15.72 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: -0.26 Total: 6.44 kcal Atomic # 7 Polarization: -45.53 SS G_CDS: -0.57 Total: -46.10 kcal Atomic # 8 Polarization: -29.91 SS G_CDS: -0.69 Total: -30.60 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -4.15 Total: 14.69 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.05 -6.31 -35.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576329986.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.487 kcal (2) G-P(sol) polarization free energy of solvation -29.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds