Wall clock time and date at job start Mon Mar 30 2020 00:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50701 * 109.54598 * 2 1 4 4 O 1.21281 * 119.99843 * 95.10558 * 3 2 1 5 5 N 1.34776 * 119.99826 * 275.11249 * 3 2 1 6 6 C 1.47064 * 136.06151 * 359.62217 * 5 3 2 7 7 C 1.53755 * 87.89135 * 152.96540 * 6 5 3 8 8 O 1.42900 * 114.39511 * 272.67971 * 7 6 5 9 9 C 1.50699 * 114.26747 * 139.79281 * 7 6 5 10 10 H 1.07998 * 119.99764 * 266.47248 * 9 7 6 11 11 C 1.37871 * 119.99982 * 86.47936 * 9 7 6 12 12 N 1.31515 * 119.99967 * 179.97438 * 11 9 7 13 13 Si 1.86806 * 120.00112 * 359.97438 * 11 9 7 14 14 H 1.48498 * 109.46850 * 90.00203 * 13 11 9 15 15 H 1.48500 * 109.47376 * 210.00128 * 13 11 9 16 16 H 1.48500 * 109.47113 * 330.00625 * 13 11 9 17 17 C 1.47065 * 136.05484 * 179.97438 * 5 3 2 18 18 C 1.53100 * 109.50595 * 120.10878 * 2 1 3 19 19 N 1.47019 * 109.25704 * 176.78310 * 18 2 1 20 20 C 1.47020 * 110.75264 * 301.38474 * 19 18 2 21 21 C 1.53097 * 109.25766 * 58.61733 * 20 19 18 22 22 O 1.43020 * 109.25737 * 303.14827 * 21 20 19 23 23 H 1.09005 * 109.47391 * 299.89054 * 1 2 3 24 24 H 1.09002 * 109.47517 * 59.89170 * 1 2 3 25 25 H 1.08999 * 109.47126 * 179.89266 * 1 2 3 26 26 H 1.09000 * 113.46779 * 267.70028 * 6 5 3 27 27 H 1.09002 * 113.46437 * 38.13952 * 6 5 3 28 28 H 0.96700 * 114.00307 * 273.58673 * 8 7 6 29 29 H 0.97005 * 120.00060 * 179.97438 * 12 11 9 30 30 H 1.09003 * 113.47185 * 321.87076 * 17 5 3 31 31 H 1.09004 * 113.46492 * 92.24443 * 17 5 3 32 32 H 1.09003 * 109.50332 * 56.85040 * 18 2 1 33 33 H 1.08999 * 109.50861 * 296.71513 * 18 2 1 34 34 H 1.00901 * 110.99924 * 65.15782 * 19 18 2 35 35 H 1.08999 * 109.50381 * 178.55170 * 20 19 18 36 36 H 1.08999 * 109.50587 * 298.68495 * 20 19 18 37 37 H 1.09002 * 109.50543 * 183.21902 * 21 20 19 38 38 H 1.08993 * 109.50810 * 63.08176 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0341 1.4202 0.0000 4 8 2.3251 1.9603 1.0462 5 7 2.1616 2.0900 -1.1626 6 6 1.9295 1.7964 -2.5848 7 6 1.6920 3.3005 -2.7980 8 8 0.3441 3.7219 -2.5797 9 6 2.2888 3.8477 -4.0689 10 1 3.2759 4.2858 -4.0570 11 6 1.5746 3.7893 -5.2468 12 7 2.0953 4.2674 -6.3559 13 14 -0.1325 3.0312 -5.2675 14 1 -1.1446 4.0833 -4.9957 15 1 -0.3905 2.4285 -6.6000 16 1 -0.2196 1.9791 -4.2231 17 6 2.5998 3.4341 -1.5677 18 6 2.0411 -0.7239 1.2484 19 7 3.5093 -0.7885 1.2045 20 6 3.9639 -1.4884 -0.0058 21 6 3.4334 -0.7568 -1.2416 22 8 2.0075 -0.6763 -1.1662 23 1 -0.3634 0.5121 0.8910 24 1 -0.3634 0.5155 -0.8890 25 1 -0.3633 -1.0276 -0.0019 26 1 2.8129 1.4192 -3.0999 27 1 1.0441 1.1861 -2.7632 28 1 -0.2254 3.6366 -3.3565 29 1 1.5930 4.2259 -7.1847 30 1 2.2856 4.2189 -0.8796 31 1 3.6603 3.4891 -1.8135 32 1 1.6331 -1.7343 1.2759 33 1 1.7273 -0.1795 2.1390 34 1 3.9136 0.1342 1.2620 35 1 5.0535 -1.5021 -0.0307 36 1 3.5865 -2.5110 0.0017 37 1 3.7200 -1.3042 -2.1396 38 1 3.8533 0.2483 -1.2777 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001576329986.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:33 Heat of formation + Delta-G solvation = -88.745981 kcal Electronic energy + Delta-G solvation = -22697.811525 eV Core-core repulsion = 19348.689047 eV Total energy + Delta-G solvation = -3349.122478 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.25031 -40.59951 -38.85867 -36.49850 -35.56541 -34.58852 -34.04415 -30.83445 -29.27350 -27.65790 -27.00511 -26.22213 -24.29409 -23.19550 -21.75943 -20.00651 -19.46679 -18.54192 -18.26151 -17.51335 -17.35096 -16.69897 -16.65072 -15.95311 -15.75248 -15.63204 -15.34909 -14.84254 -14.71299 -14.24915 -14.09624 -13.83948 -13.60885 -13.31918 -13.20088 -13.06692 -12.93216 -12.68956 -12.45550 -12.38601 -12.11804 -11.96335 -11.90690 -11.33454 -11.11424 -10.78313 -10.45614 -9.76591 -9.37888 -8.46762 -6.58671 1.21157 1.25820 1.34045 1.36683 1.71268 2.13287 2.52757 2.70971 3.07082 3.14189 3.27723 3.51001 3.76748 3.85363 3.98878 4.10137 4.25013 4.32076 4.37757 4.41626 4.51219 4.56756 4.62070 4.67151 4.69180 4.75084 4.78452 4.84804 4.91002 5.05741 5.22675 5.76470 5.87906 5.98131 6.08315 6.48668 6.60187 6.66568 6.92070 7.09369 8.68411 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.028002 B = 0.006447 C = 0.006401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.680881 B = 4341.869296 C = 4373.310360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.070 3.930 3 C 0.512 3.488 4 O -0.579 6.579 5 N -0.624 5.624 6 C 0.092 3.908 7 C 0.183 3.817 8 O -0.557 6.557 9 C -0.541 4.541 10 H 0.060 0.940 11 C 0.031 3.969 12 N -0.919 5.919 13 Si 0.915 3.085 14 H -0.255 1.255 15 H -0.279 1.279 16 H -0.237 1.237 17 C 0.116 3.884 18 C 0.056 3.944 19 N -0.686 5.686 20 C 0.024 3.976 21 C 0.008 3.992 22 O -0.365 6.365 23 H 0.084 0.916 24 H 0.053 0.947 25 H 0.103 0.897 26 H 0.097 0.903 27 H 0.073 0.927 28 H 0.355 0.645 29 H 0.275 0.725 30 H 0.065 0.935 31 H 0.103 0.897 32 H 0.113 0.887 33 H 0.090 0.910 34 H 0.338 0.662 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.124 0.876 38 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.635 -13.261 9.058 16.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.026 3.974 3 C 0.302 3.698 4 O -0.460 6.460 5 N -0.357 5.357 6 C -0.031 4.031 7 C 0.142 3.858 8 O -0.370 6.370 9 C -0.578 4.578 10 H 0.079 0.921 11 C -0.170 4.170 12 N -0.556 5.556 13 Si 0.740 3.260 14 H -0.181 1.181 15 H -0.206 1.206 16 H -0.161 1.161 17 C -0.006 4.006 18 C -0.075 4.075 19 N -0.315 5.315 20 C -0.105 4.105 21 C -0.070 4.070 22 O -0.284 6.284 23 H 0.102 0.898 24 H 0.072 0.928 25 H 0.122 0.878 26 H 0.115 0.885 27 H 0.091 0.909 28 H 0.208 0.792 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.121 0.879 32 H 0.131 0.869 33 H 0.108 0.892 34 H 0.156 0.844 35 H 0.120 0.880 36 H 0.117 0.883 37 H 0.142 0.858 38 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -1.357 -13.597 10.467 17.213 hybrid contribution -0.628 1.070 -1.663 2.075 sum -1.986 -12.527 8.804 15.439 Atomic orbital electron populations 1.21729 0.88907 1.05222 1.03151 1.22622 0.98368 0.86204 0.90247 1.21443 0.77606 0.89252 0.81500 1.90649 1.53237 1.70780 1.31319 1.49712 1.63104 1.16168 1.06676 1.24135 1.01592 0.99485 0.77867 1.20346 0.80556 0.91401 0.93486 1.86456 1.22028 1.88431 1.40038 1.21224 1.04096 1.41095 0.91427 0.92135 1.25760 1.01887 0.94447 0.94934 1.69976 1.39888 1.45272 1.00498 0.86375 0.80254 0.80467 0.78882 1.18128 1.20561 1.16148 1.23160 0.99354 0.84342 0.93785 1.22534 0.88377 1.01592 0.94977 1.60882 1.07273 1.24423 1.38881 1.22769 1.02013 0.99082 0.86629 1.23582 0.80872 1.00348 1.02161 1.88134 1.21975 1.76581 1.41711 0.89760 0.92828 0.87782 0.88478 0.90912 0.79159 0.91580 0.91668 0.87868 0.86939 0.89189 0.84418 0.87975 0.88297 0.85808 0.94735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.26 8.83 71.98 0.64 -2.63 16 2 C 0.07 1.98 0.99 -11.51 -0.01 1.97 16 3 C 0.51 18.49 5.22 87.66 0.46 18.95 16 4 O -0.58 -23.62 16.04 -3.03 -0.05 -23.67 16 5 N -0.62 -23.93 3.06 -858.32 -2.63 -26.56 16 6 C 0.09 3.58 5.42 83.26 0.45 4.03 16 7 C 0.18 8.18 1.10 -11.12 -0.01 8.17 16 8 O -0.56 -25.48 13.33 -148.98 -1.99 -27.47 16 9 C -0.54 -27.95 9.28 25.60 0.24 -27.71 16 10 H 0.06 3.42 8.06 -2.91 -0.02 3.40 16 11 C 0.03 1.64 5.47 84.65 0.46 2.10 16 12 N -0.92 -51.71 13.96 21.45 0.30 -51.41 16 13 Si 0.92 38.06 24.42 68.60 1.68 39.74 16 14 H -0.26 -10.17 7.06 99.48 0.70 -9.46 16 15 H -0.28 -11.45 7.11 99.48 0.71 -10.75 16 16 H -0.24 -9.07 5.50 99.48 0.55 -8.53 16 17 C 0.12 4.78 8.02 83.17 0.67 5.45 16 18 C 0.06 1.34 5.17 86.31 0.45 1.79 16 19 N -0.69 -16.81 6.88 -512.96 -3.53 -20.33 16 20 C 0.02 0.49 6.76 86.31 0.58 1.08 16 21 C 0.01 0.20 6.24 72.01 0.45 0.65 16 22 O -0.37 -10.18 8.82 -148.98 -1.31 -11.50 16 23 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 24 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.10 3.63 8.10 -2.39 -0.02 3.61 16 27 H 0.07 2.77 7.05 -2.39 -0.02 2.76 16 28 H 0.36 15.28 3.16 -74.06 -0.23 15.05 16 29 H 0.27 14.37 8.31 -92.70 -0.77 13.60 16 30 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 31 H 0.10 3.98 8.10 -2.39 -0.02 3.96 16 32 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.09 2.27 7.76 -2.39 -0.02 2.26 16 34 H 0.34 9.63 7.48 -89.69 -0.67 8.96 16 35 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 38 H 0.03 0.98 6.52 -2.39 -0.02 0.97 16 Total: -1.00 -62.27 298.37 -3.15 -65.42 By element: Atomic # 1 Polarization: 41.92 SS G_CDS: 0.01 Total: 41.93 kcal Atomic # 6 Polarization: 9.47 SS G_CDS: 4.37 Total: 13.84 kcal Atomic # 7 Polarization: -92.45 SS G_CDS: -5.86 Total: -98.30 kcal Atomic # 8 Polarization: -59.28 SS G_CDS: -3.35 Total: -62.63 kcal Atomic # 14 Polarization: 38.06 SS G_CDS: 1.68 Total: 39.74 kcal Total: -62.27 -3.15 -65.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576329986.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.328 kcal (2) G-P(sol) polarization free energy of solvation -62.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds