Wall clock time and date at job start Mon Mar 30 2020 00:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50707 * 109.90481 * 2 1 4 4 O 1.21276 * 120.00204 * 96.10301 * 3 2 1 5 5 N 1.34781 * 119.99639 * 276.10227 * 3 2 1 6 6 C 1.47063 * 136.06138 * 359.63428 * 5 3 2 7 7 C 1.53753 * 87.89137 * 152.95886 * 6 5 3 8 8 O 1.42907 * 114.39566 * 272.67889 * 7 6 5 9 9 C 1.50696 * 114.08856 * 139.77747 * 7 6 5 10 10 H 1.08002 * 119.99789 * 266.56413 * 9 7 6 11 11 C 1.37882 * 119.99902 * 86.56334 * 9 7 6 12 12 N 1.31514 * 119.99923 * 0.02562 * 11 9 7 13 13 Si 1.86800 * 119.99819 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.46699 * 90.00350 * 13 11 9 15 15 H 1.48499 * 109.47220 * 209.99761 * 13 11 9 16 16 H 1.48503 * 109.47346 * 330.00338 * 13 11 9 17 17 C 1.47066 * 136.05274 * 179.97438 * 5 3 2 18 18 C 1.53983 * 109.91978 * 121.10183 * 2 1 3 19 19 C 1.54597 * 105.14108 * 118.32940 * 18 2 1 20 20 H 1.09000 * 110.72936 * 96.57876 * 19 18 2 21 21 O 1.42903 * 110.72615 * 219.68853 * 19 18 2 22 22 C 1.54939 * 103.07836 * 338.12721 * 19 18 2 23 23 N 1.47909 * 110.08206 * 238.79449 * 2 1 3 24 24 H 1.08994 * 109.46937 * 298.89372 * 1 2 3 25 25 H 1.08994 * 109.47319 * 58.89896 * 1 2 3 26 26 H 1.09008 * 109.46698 * 178.89845 * 1 2 3 27 27 H 1.09002 * 113.46686 * 267.69109 * 6 5 3 28 28 H 1.09008 * 113.46620 * 38.12807 * 6 5 3 29 29 H 0.96699 * 113.99724 * 273.58446 * 8 7 6 30 30 H 0.97000 * 119.99915 * 179.97438 * 12 11 9 31 31 H 1.08997 * 113.47319 * 321.87750 * 17 5 3 32 32 H 1.09008 * 113.46366 * 92.25358 * 17 5 3 33 33 H 1.09001 * 110.31124 * 359.41348 * 18 2 1 34 34 H 1.09005 * 110.31277 * 237.24315 * 18 2 1 35 35 H 0.96700 * 114.00311 * 177.54708 * 21 19 18 36 36 H 1.09009 * 110.66060 * 155.76158 * 22 19 18 37 37 H 1.08997 * 110.67310 * 278.89169 * 22 19 18 38 38 H 1.00896 * 110.99924 * 145.37093 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0431 1.4170 0.0000 4 8 2.3546 1.9492 1.0443 5 7 2.1559 2.0929 -1.1607 6 6 1.8987 1.8092 -2.5806 7 6 1.6673 3.3159 -2.7811 8 8 0.3258 3.7445 -2.5383 9 6 2.2486 3.8626 -4.0594 10 1 3.2398 4.2916 -4.0618 11 6 1.5151 3.8152 -5.2260 12 7 0.3080 3.2932 -5.2229 13 14 2.2354 4.4936 -6.8104 14 1 2.9701 3.4163 -7.5211 15 1 1.1396 4.9993 -7.6756 16 1 3.1691 5.6041 -6.4941 17 6 2.5960 3.4366 -1.5651 18 6 2.0547 -0.7478 1.2396 19 6 2.8580 -1.9441 0.6795 20 1 3.9214 -1.7085 0.6368 21 8 2.6329 -3.1165 1.4648 22 6 2.2775 -2.1195 -0.7462 23 7 2.0379 -0.7197 -1.1882 24 1 -0.3633 0.4965 0.8997 25 1 -0.3633 0.5308 -0.8799 26 1 -0.3633 -1.0276 -0.0198 27 1 2.7711 1.4295 -3.1123 28 1 1.0066 1.2054 -2.7479 29 1 -0.2568 3.6673 -3.3062 30 1 -0.2082 3.2602 -6.0435 31 1 2.2981 4.2193 -0.8674 32 1 3.6527 3.4864 -1.8280 33 1 1.2226 -1.1025 1.8478 34 1 2.7036 -0.0981 1.8269 35 1 3.0847 -3.9047 1.1335 36 1 2.9990 -2.6135 -1.3972 37 1 1.3415 -2.6770 -0.7147 38 1 2.8900 -0.3000 -1.5283 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001576330605.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:47 Heat of formation + Delta-G solvation = -86.109178 kcal Electronic energy + Delta-G solvation = -21967.521749 eV Core-core repulsion = 18618.513611 eV Total energy + Delta-G solvation = -3349.008138 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.40661 -38.74255 -37.25168 -35.67035 -34.01484 -32.18288 -30.97557 -29.50990 -28.28671 -26.10236 -25.28505 -24.99675 -21.87538 -21.23739 -19.54336 -18.43524 -17.72705 -17.47227 -16.63471 -15.81151 -15.14357 -14.92856 -14.65692 -14.38186 -14.14716 -14.11700 -13.56649 -13.17651 -12.74200 -12.61414 -12.34332 -12.19417 -11.87815 -11.68808 -11.55906 -11.51598 -11.45553 -11.06016 -10.97708 -10.79187 -10.48287 -10.24920 -10.21569 -9.61964 -9.21676 -8.78562 -8.59545 -8.35668 -7.85882 -6.39515 -4.49788 3.05830 3.14057 3.22603 3.25516 3.42390 3.81686 4.18034 4.29378 4.55288 4.71297 4.80675 4.85873 5.08788 5.21782 5.36217 5.51544 5.60019 5.74709 5.84978 5.94192 5.97022 6.03149 6.09731 6.17203 6.40348 6.43649 6.54221 6.56457 6.69770 6.83787 7.10935 7.23058 7.43077 7.63423 7.81261 8.45657 8.53395 8.68918 9.21387 9.50400 10.67098 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.030146 B = 0.005102 C = 0.004836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.582290 B = 5486.882734 C = 5788.977940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.095 3.905 3 C 0.533 3.467 4 O -0.563 6.563 5 N -0.625 5.625 6 C 0.081 3.919 7 C 0.239 3.761 8 O -0.571 6.571 9 C -0.534 4.534 10 H 0.071 0.929 11 C 0.073 3.927 12 N -0.896 5.896 13 Si 0.908 3.092 14 H -0.277 1.277 15 H -0.283 1.283 16 H -0.271 1.271 17 C 0.104 3.896 18 C -0.130 4.130 19 C 0.067 3.933 20 H 0.062 0.938 21 O -0.560 6.560 22 C 0.013 3.987 23 N -0.648 5.648 24 H 0.061 0.939 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.394 0.606 30 H 0.274 0.726 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.377 0.623 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.416 -10.490 4.513 11.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.001 3.999 3 C 0.321 3.679 4 O -0.442 6.442 5 N -0.357 5.357 6 C -0.041 4.041 7 C 0.197 3.803 8 O -0.384 6.384 9 C -0.573 4.573 10 H 0.090 0.910 11 C -0.129 4.129 12 N -0.537 5.537 13 Si 0.735 3.265 14 H -0.203 1.203 15 H -0.209 1.209 16 H -0.196 1.196 17 C -0.019 4.019 18 C -0.169 4.169 19 C 0.006 3.994 20 H 0.080 0.920 21 O -0.364 6.364 22 C -0.117 4.117 23 N -0.280 5.280 24 H 0.080 0.920 25 H 0.091 0.909 26 H 0.083 0.917 27 H 0.096 0.904 28 H 0.093 0.907 29 H 0.250 0.750 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.110 0.890 35 H 0.224 0.776 36 H 0.097 0.903 37 H 0.109 0.891 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.607 -9.908 5.722 11.735 hybrid contribution 1.314 -0.229 -1.251 1.829 sum 3.921 -10.137 4.471 11.753 Atomic orbital electron populations 1.21681 0.91029 1.02472 1.02905 1.21743 0.98082 0.90593 0.89493 1.19964 0.78312 0.87160 0.82467 1.90634 1.52524 1.69892 1.31191 1.49731 1.62188 1.16933 1.06851 1.24222 1.00553 1.03084 0.76271 1.19597 0.81780 0.88452 0.90516 1.86042 1.21403 1.87445 1.43546 1.21419 1.02589 1.41051 0.92200 0.91044 1.25062 0.94698 0.93594 0.99590 1.69264 1.10568 1.44558 1.29262 0.86330 0.78839 0.79359 0.81974 1.20307 1.20899 1.19574 1.23378 0.99084 0.83371 0.96034 1.22744 1.01411 0.95017 0.97720 1.23516 0.98263 0.86307 0.91328 0.92003 1.86519 1.75551 1.19517 1.54800 1.23908 1.01643 0.91979 0.94208 1.62856 1.34672 1.01767 1.28673 0.92009 0.90875 0.91687 0.90358 0.90712 0.74958 0.91579 0.91653 0.89730 0.89361 0.88986 0.77622 0.90298 0.89086 0.83884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.93 8.61 37.16 0.32 -1.61 16 2 C 0.09 1.53 1.01 -131.68 -0.13 1.40 16 3 C 0.53 10.71 6.69 -10.98 -0.07 10.64 16 4 O -0.56 -12.85 16.35 5.56 0.09 -12.76 16 5 N -0.63 -12.90 3.51 -185.06 -0.65 -13.55 16 6 C 0.08 1.70 6.03 -8.38 -0.05 1.65 16 7 C 0.24 5.63 1.59 -91.13 -0.14 5.48 16 8 O -0.57 -14.66 13.55 -35.23 -0.48 -15.14 16 9 C -0.53 -13.14 8.69 -34.44 -0.30 -13.43 16 10 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16 11 C 0.07 1.79 5.40 -17.82 -0.10 1.69 16 12 N -0.90 -22.43 11.01 55.43 0.61 -21.82 16 13 Si 0.91 19.13 29.54 -169.99 -5.02 14.11 16 14 H -0.28 -5.79 7.11 56.52 0.40 -5.38 16 15 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 16 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 17 C 0.10 2.23 8.02 -8.52 -0.07 2.16 16 18 C -0.13 -1.91 5.84 -25.38 -0.15 -2.06 16 19 C 0.07 0.79 4.43 -24.87 -0.11 0.68 16 20 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 21 O -0.56 -6.14 13.40 -35.23 -0.47 -6.61 16 22 C 0.01 0.14 7.28 -1.79 -0.01 0.13 16 23 N -0.65 -9.35 5.92 -97.47 -0.58 -9.93 16 24 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 26 H 0.06 0.89 8.14 -51.92 -0.42 0.47 16 27 H 0.08 1.54 8.07 -51.93 -0.42 1.12 16 28 H 0.07 1.62 8.08 -51.92 -0.42 1.21 16 29 H 0.39 10.22 6.33 45.56 0.29 10.51 16 30 H 0.27 6.52 8.31 -40.82 -0.34 6.19 16 31 H 0.06 1.46 8.14 -51.93 -0.42 1.04 16 32 H 0.08 1.65 8.10 -51.92 -0.42 1.23 16 33 H 0.09 1.28 7.62 -51.93 -0.40 0.88 16 34 H 0.09 1.51 6.75 -51.93 -0.35 1.16 16 35 H 0.38 2.32 9.12 45.56 0.42 2.73 16 36 H 0.08 0.72 8.14 -51.92 -0.42 0.30 16 37 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.34 5.06 7.31 -39.29 -0.29 4.78 16 LS Contribution 312.66 15.07 4.71 4.71 Total: -1.00 -28.68 312.66 -6.69 -35.37 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: -4.09 Total: 18.89 kcal Atomic # 6 Polarization: 7.55 SS G_CDS: -0.82 Total: 6.73 kcal Atomic # 7 Polarization: -44.69 SS G_CDS: -0.62 Total: -45.31 kcal Atomic # 8 Polarization: -33.65 SS G_CDS: -0.86 Total: -34.51 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.02 Total: 14.11 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.68 -6.69 -35.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576330605.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.738 kcal (2) G-P(sol) polarization free energy of solvation -28.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds