Wall clock time and date at job start Mon Mar 30 2020 00:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50707 * 109.90481 * 2 1 4 4 O 1.21276 * 120.00204 * 96.10301 * 3 2 1 5 5 N 1.34781 * 119.99639 * 276.10227 * 3 2 1 6 6 C 1.47063 * 136.06138 * 359.63428 * 5 3 2 7 7 C 1.53753 * 87.89137 * 152.95886 * 6 5 3 8 8 O 1.42907 * 114.39566 * 272.67889 * 7 6 5 9 9 C 1.50696 * 114.08856 * 139.77747 * 7 6 5 10 10 H 1.08002 * 119.99789 * 266.56413 * 9 7 6 11 11 C 1.37882 * 119.99902 * 86.56334 * 9 7 6 12 12 N 1.31514 * 119.99923 * 0.02562 * 11 9 7 13 13 Si 1.86800 * 119.99819 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.46699 * 90.00350 * 13 11 9 15 15 H 1.48499 * 109.47220 * 209.99761 * 13 11 9 16 16 H 1.48503 * 109.47346 * 330.00338 * 13 11 9 17 17 C 1.47066 * 136.05274 * 179.97438 * 5 3 2 18 18 C 1.53983 * 109.91978 * 121.10183 * 2 1 3 19 19 C 1.54597 * 105.14108 * 118.32940 * 18 2 1 20 20 H 1.09000 * 110.72936 * 96.57876 * 19 18 2 21 21 O 1.42903 * 110.72615 * 219.68853 * 19 18 2 22 22 C 1.54939 * 103.07836 * 338.12721 * 19 18 2 23 23 N 1.47909 * 110.08206 * 238.79449 * 2 1 3 24 24 H 1.08994 * 109.46937 * 298.89372 * 1 2 3 25 25 H 1.08994 * 109.47319 * 58.89896 * 1 2 3 26 26 H 1.09008 * 109.46698 * 178.89845 * 1 2 3 27 27 H 1.09002 * 113.46686 * 267.69109 * 6 5 3 28 28 H 1.09008 * 113.46620 * 38.12807 * 6 5 3 29 29 H 0.96699 * 113.99724 * 273.58446 * 8 7 6 30 30 H 0.97000 * 119.99915 * 179.97438 * 12 11 9 31 31 H 1.08997 * 113.47319 * 321.87750 * 17 5 3 32 32 H 1.09008 * 113.46366 * 92.25358 * 17 5 3 33 33 H 1.09001 * 110.31124 * 359.41348 * 18 2 1 34 34 H 1.09005 * 110.31277 * 237.24315 * 18 2 1 35 35 H 0.96700 * 114.00311 * 177.54708 * 21 19 18 36 36 H 1.09009 * 110.66060 * 155.76158 * 22 19 18 37 37 H 1.08997 * 110.67310 * 278.89169 * 22 19 18 38 38 H 1.00896 * 110.99924 * 145.37093 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0431 1.4170 0.0000 4 8 2.3546 1.9492 1.0443 5 7 2.1559 2.0929 -1.1607 6 6 1.8987 1.8092 -2.5806 7 6 1.6673 3.3159 -2.7811 8 8 0.3258 3.7445 -2.5383 9 6 2.2486 3.8626 -4.0594 10 1 3.2398 4.2916 -4.0618 11 6 1.5151 3.8152 -5.2260 12 7 0.3080 3.2932 -5.2229 13 14 2.2354 4.4936 -6.8104 14 1 2.9701 3.4163 -7.5211 15 1 1.1396 4.9993 -7.6756 16 1 3.1691 5.6041 -6.4941 17 6 2.5960 3.4366 -1.5651 18 6 2.0547 -0.7478 1.2396 19 6 2.8580 -1.9441 0.6795 20 1 3.9214 -1.7085 0.6368 21 8 2.6329 -3.1165 1.4648 22 6 2.2775 -2.1195 -0.7462 23 7 2.0379 -0.7197 -1.1882 24 1 -0.3633 0.4965 0.8997 25 1 -0.3633 0.5308 -0.8799 26 1 -0.3633 -1.0276 -0.0198 27 1 2.7711 1.4295 -3.1123 28 1 1.0066 1.2054 -2.7479 29 1 -0.2568 3.6673 -3.3062 30 1 -0.2082 3.2602 -6.0435 31 1 2.2981 4.2193 -0.8674 32 1 3.6527 3.4864 -1.8280 33 1 1.2226 -1.1025 1.8478 34 1 2.7036 -0.0981 1.8269 35 1 3.0847 -3.9047 1.1335 36 1 2.9990 -2.6135 -1.3972 37 1 1.3415 -2.6770 -0.7147 38 1 2.8900 -0.3000 -1.5283 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001576330605.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:46 Heat of formation + Delta-G solvation = -111.319488 kcal Electronic energy + Delta-G solvation = -21968.614950 eV Core-core repulsion = 18618.513611 eV Total energy + Delta-G solvation = -3350.101339 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.86143 -40.18865 -38.75857 -36.71635 -35.88120 -34.09669 -32.17232 -30.86644 -29.74614 -27.52109 -26.90473 -26.61264 -23.31571 -22.27298 -21.17550 -19.91047 -19.29746 -18.64789 -18.07924 -17.46447 -16.96038 -16.46371 -15.93926 -15.78346 -15.50441 -15.25403 -15.14194 -14.58770 -14.34223 -14.08120 -13.85841 -13.48442 -13.36587 -13.23901 -13.10378 -12.77061 -12.73359 -12.64182 -12.57905 -12.21576 -12.12376 -11.74593 -11.34593 -11.19185 -10.93096 -10.62732 -10.17019 -9.71072 -9.59606 -8.24389 -6.41349 1.46760 1.48844 1.52814 1.61526 1.86856 2.42729 2.78099 2.97355 3.27401 3.30646 3.57574 3.71243 3.79845 4.06461 4.16328 4.19924 4.24263 4.44689 4.54898 4.62166 4.66075 4.71503 4.80663 4.84282 4.88309 4.92398 5.05369 5.06991 5.18382 5.26645 5.52893 5.75713 5.93832 6.09743 6.64145 6.82216 6.84399 7.05010 7.32434 7.51535 8.81754 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.030146 B = 0.005102 C = 0.004836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.582290 B = 5486.882734 C = 5788.977940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.102 3.898 3 C 0.527 3.473 4 O -0.595 6.595 5 N -0.625 5.625 6 C 0.104 3.896 7 C 0.216 3.784 8 O -0.587 6.587 9 C -0.552 4.552 10 H 0.075 0.925 11 C 0.034 3.966 12 N -0.916 5.916 13 Si 0.970 3.030 14 H -0.270 1.270 15 H -0.285 1.285 16 H -0.271 1.271 17 C 0.103 3.897 18 C -0.130 4.130 19 C 0.079 3.921 20 H 0.070 0.930 21 O -0.570 6.570 22 C 0.019 3.981 23 N -0.656 5.656 24 H 0.057 0.943 25 H 0.050 0.950 26 H 0.089 0.911 27 H 0.094 0.906 28 H 0.065 0.935 29 H 0.389 0.611 30 H 0.276 0.724 31 H 0.049 0.951 32 H 0.106 0.894 33 H 0.089 0.911 34 H 0.070 0.930 35 H 0.400 0.600 36 H 0.108 0.892 37 H 0.095 0.905 38 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.384 -12.216 3.725 13.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.008 3.992 3 C 0.317 3.683 4 O -0.477 6.477 5 N -0.357 5.357 6 C -0.018 4.018 7 C 0.174 3.826 8 O -0.401 6.401 9 C -0.590 4.590 10 H 0.093 0.907 11 C -0.167 4.167 12 N -0.557 5.557 13 Si 0.795 3.205 14 H -0.195 1.195 15 H -0.211 1.211 16 H -0.195 1.195 17 C -0.020 4.020 18 C -0.170 4.170 19 C 0.018 3.982 20 H 0.088 0.912 21 O -0.378 6.378 22 C -0.110 4.110 23 N -0.287 5.287 24 H 0.076 0.924 25 H 0.069 0.931 26 H 0.107 0.893 27 H 0.112 0.888 28 H 0.083 0.917 29 H 0.245 0.755 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.124 0.876 33 H 0.108 0.892 34 H 0.089 0.911 35 H 0.250 0.750 36 H 0.126 0.874 37 H 0.113 0.887 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 3.588 -11.670 4.935 13.168 hybrid contribution 0.997 0.309 -0.950 1.411 sum 4.584 -11.361 3.986 12.883 Atomic orbital electron populations 1.21653 0.90774 1.03599 1.01644 1.21679 0.98120 0.88233 0.91190 1.20756 0.77442 0.88587 0.81543 1.90611 1.53817 1.71098 1.32135 1.49747 1.62250 1.16524 1.07136 1.23932 1.00669 1.00915 0.76304 1.19907 0.81037 0.90402 0.91222 1.86027 1.22534 1.87975 1.43516 1.21646 1.02927 1.41606 0.92803 0.90734 1.25745 0.94971 0.93710 1.02238 1.69331 1.11375 1.45057 1.29966 0.85373 0.77964 0.78743 0.78440 1.19533 1.21077 1.19529 1.23402 0.99887 0.83716 0.94982 1.22681 1.01513 0.95942 0.96852 1.23291 0.98054 0.85690 0.91184 0.91196 1.86469 1.76176 1.20184 1.54994 1.23991 1.02675 0.90112 0.94236 1.62875 1.34774 1.03216 1.27841 0.92368 0.93060 0.89265 0.88760 0.91699 0.75508 0.91401 0.93215 0.87580 0.89214 0.91138 0.74958 0.87378 0.88703 0.84076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.65 8.61 71.98 0.62 -3.03 16 2 C 0.10 3.20 1.01 2.92 0.00 3.21 16 3 C 0.53 21.22 6.69 87.66 0.59 21.81 16 4 O -0.59 -27.59 16.35 -3.02 -0.05 -27.64 16 5 N -0.63 -25.79 3.51 -858.26 -3.01 -28.80 16 6 C 0.10 4.30 6.03 83.26 0.50 4.80 16 7 C 0.22 10.22 1.59 -11.13 -0.02 10.21 16 8 O -0.59 -30.82 13.55 -148.98 -2.02 -32.84 16 9 C -0.55 -26.90 8.69 25.60 0.22 -26.67 16 10 H 0.07 3.50 7.81 -2.91 -0.02 3.48 16 11 C 0.03 1.63 5.40 84.66 0.46 2.09 16 12 N -0.92 -45.75 11.01 21.45 0.24 -45.51 16 13 Si 0.97 38.52 29.54 68.60 2.03 40.54 16 14 H -0.27 -10.36 7.11 99.48 0.71 -9.66 16 15 H -0.29 -11.32 7.11 99.48 0.71 -10.62 16 16 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 17 C 0.10 4.45 8.02 83.17 0.67 5.12 16 18 C -0.13 -3.69 5.84 31.47 0.18 -3.51 16 19 C 0.08 1.65 4.43 31.80 0.14 1.79 16 20 H 0.07 1.38 8.14 -2.39 -0.02 1.37 16 21 O -0.57 -10.74 13.40 -148.98 -2.00 -12.73 16 22 C 0.02 0.37 7.28 86.61 0.63 1.00 16 23 N -0.66 -17.65 5.92 -462.29 -2.74 -20.39 16 24 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.09 2.28 8.14 -2.38 -0.02 2.26 16 27 H 0.09 3.58 8.07 -2.39 -0.02 3.56 16 28 H 0.06 2.81 8.08 -2.38 -0.02 2.79 16 29 H 0.39 20.70 6.33 -74.06 -0.47 20.24 16 30 H 0.28 13.06 8.31 -92.71 -0.77 12.29 16 31 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.11 4.08 8.10 -2.38 -0.02 4.06 16 33 H 0.09 2.48 7.62 -2.39 -0.02 2.46 16 34 H 0.07 2.31 6.75 -2.38 -0.02 2.30 16 35 H 0.40 3.44 9.12 -74.06 -0.68 2.76 16 36 H 0.11 1.51 8.14 -2.38 -0.02 1.49 16 37 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.34 9.40 7.31 -89.70 -0.66 8.75 16 Total: -1.00 -61.14 312.66 -4.25 -65.40 By element: Atomic # 1 Polarization: 45.87 SS G_CDS: -0.70 Total: 45.17 kcal Atomic # 6 Polarization: 12.82 SS G_CDS: 3.99 Total: 16.81 kcal Atomic # 7 Polarization: -89.19 SS G_CDS: -5.51 Total: -94.70 kcal Atomic # 8 Polarization: -69.15 SS G_CDS: -4.06 Total: -73.22 kcal Atomic # 14 Polarization: 38.52 SS G_CDS: 2.03 Total: 40.54 kcal Total: -61.14 -4.25 -65.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576330605.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.920 kcal (2) G-P(sol) polarization free energy of solvation -61.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds