Wall clock time and date at job start Mon Mar 30 2020 00:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.88070 * 2 1 4 4 O 1.21283 * 119.99704 * 263.96347 * 3 2 1 5 5 N 1.34776 * 120.00620 * 83.96551 * 3 2 1 6 6 C 1.47068 * 136.05370 * 359.62575 * 5 3 2 7 7 C 1.53238 * 88.08302 * 207.20705 * 6 5 3 8 8 O 1.42905 * 114.01771 * 87.71230 * 7 6 5 9 9 C 1.50696 * 114.32869 * 220.46890 * 7 6 5 10 10 H 1.08005 * 119.99476 * 99.23482 * 9 7 6 11 11 C 1.37872 * 120.00225 * 279.23925 * 9 7 6 12 12 N 1.31511 * 119.99867 * 10.19063 * 11 9 7 13 13 Si 1.86806 * 120.00056 * 190.19160 * 11 9 7 14 14 H 1.48509 * 109.46863 * 84.99442 * 13 11 9 15 15 H 1.48493 * 109.47101 * 204.99460 * 13 11 9 16 16 H 1.48502 * 109.46924 * 324.99682 * 13 11 9 17 17 C 1.47068 * 136.05980 * 180.02562 * 5 3 2 18 18 C 1.54313 * 109.89245 * 238.95901 * 2 1 3 19 19 C 1.55141 * 103.02276 * 218.15029 * 18 2 1 20 20 H 1.08998 * 110.99340 * 277.53025 * 19 18 2 21 21 O 1.42897 * 110.99073 * 153.74431 * 19 18 2 22 22 C 1.54909 * 101.65169 * 35.65454 * 19 18 2 23 23 N 1.47453 * 110.01941 * 121.11047 * 2 1 3 24 24 H 1.08996 * 109.47383 * 181.03536 * 1 2 3 25 25 H 1.08997 * 109.47223 * 301.03859 * 1 2 3 26 26 H 1.09001 * 109.46609 * 61.03931 * 1 2 3 27 27 H 1.08997 * 113.46669 * 321.93679 * 6 5 3 28 28 H 1.09002 * 113.46912 * 92.38154 * 6 5 3 29 29 H 0.96703 * 113.99435 * 90.40838 * 8 7 6 30 30 H 0.97001 * 119.99776 * 180.02562 * 12 11 9 31 31 H 1.09000 * 113.46615 * 267.62120 * 17 5 3 32 32 H 1.09004 * 113.46827 * 38.00328 * 17 5 3 33 33 H 1.08997 * 110.70451 * 99.76897 * 18 2 1 34 34 H 1.09003 * 110.85561 * 336.60559 * 18 2 1 35 35 H 0.96702 * 114.00158 * 179.97438 * 21 19 18 36 36 H 1.09005 * 110.37206 * 81.75922 * 22 19 18 37 37 H 1.08993 * 110.37552 * 204.10199 * 22 19 18 38 38 H 1.00901 * 110.99680 * 356.22541 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0425 1.4172 0.0000 4 8 2.3525 1.9498 -1.0446 5 7 2.1563 2.0927 1.1607 6 6 1.8885 1.8128 2.5794 7 6 1.6676 3.3157 2.7811 8 8 0.3261 3.7443 2.5382 9 6 2.2488 3.8626 4.0594 10 1 3.2017 4.3708 4.0453 11 6 1.5642 3.7142 5.2469 12 7 0.5110 2.9286 5.3049 13 14 2.1324 4.6288 6.7733 14 1 1.5536 5.9964 6.7751 15 1 1.6807 3.8985 7.9848 16 1 3.6147 4.7187 6.7734 17 6 2.5963 3.4365 1.5650 18 6 2.0551 -0.7482 -1.2433 19 6 3.2917 -1.5092 -0.6969 20 1 4.1670 -0.8604 -0.6657 21 8 3.5542 -2.6816 -1.4705 22 6 2.8242 -1.8807 0.7324 23 7 2.0348 -0.7158 1.1862 24 1 -0.3634 -1.0274 0.0186 25 1 -0.3633 0.5299 0.8805 26 1 -0.3632 0.4976 -0.8992 27 1 0.9898 1.2179 2.7423 28 1 2.7543 1.4254 3.1164 29 1 -0.2407 3.7249 3.3214 30 1 0.0291 2.8245 6.1403 31 1 3.6527 3.4862 1.8289 32 1 2.2990 4.2190 0.8668 33 1 2.3488 -0.0438 -2.0214 34 1 1.3080 -1.4470 -1.6199 35 1 4.3187 -3.1902 -1.1670 36 1 2.2012 -2.7748 0.7075 37 1 3.6836 -2.0340 1.3850 38 1 1.2754 -1.0045 1.7846 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001576330607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:50 Heat of formation + Delta-G solvation = -88.038783 kcal Electronic energy + Delta-G solvation = -22012.035219 eV Core-core repulsion = 18662.943407 eV Total energy + Delta-G solvation = -3349.091812 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.22696 -38.67007 -37.10702 -35.71578 -33.95488 -32.26753 -31.04610 -29.55247 -28.39462 -25.70899 -25.19075 -24.89422 -22.07830 -21.20533 -19.64322 -18.12560 -17.51191 -17.35543 -16.41816 -15.83434 -15.46787 -15.04184 -14.47497 -14.30925 -14.16868 -13.67051 -13.46171 -13.18460 -12.90121 -12.69722 -12.45406 -12.14781 -11.94452 -11.87156 -11.72733 -11.54699 -11.26700 -11.04444 -10.86558 -10.67832 -10.47314 -10.20880 -10.11494 -9.59941 -9.07709 -8.88427 -8.49165 -8.16363 -7.70049 -6.36700 -4.44732 3.17326 3.21468 3.25026 3.27493 3.65264 3.83660 4.21991 4.39430 4.57639 4.68754 4.85231 4.96889 5.09282 5.25016 5.34668 5.51577 5.57765 5.72239 5.76896 5.82519 5.95846 6.04285 6.16811 6.17919 6.32038 6.47445 6.69987 6.76660 6.82025 6.89781 7.18296 7.29426 7.48421 7.64727 7.83796 8.57228 8.66041 8.90359 9.25518 9.29324 10.69489 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.029832 B = 0.005191 C = 0.004966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.377069 B = 5392.846294 C = 5636.829415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.095 3.905 3 C 0.554 3.446 4 O -0.573 6.573 5 N -0.616 5.616 6 C 0.108 3.892 7 C 0.231 3.769 8 O -0.568 6.568 9 C -0.537 4.537 10 H 0.071 0.929 11 C 0.074 3.926 12 N -0.889 5.889 13 Si 0.902 3.098 14 H -0.276 1.276 15 H -0.285 1.285 16 H -0.272 1.272 17 C 0.105 3.895 18 C -0.117 4.117 19 C 0.092 3.908 20 H 0.073 0.927 21 O -0.561 6.561 22 C 0.018 3.982 23 N -0.660 5.660 24 H 0.063 0.937 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.060 0.940 28 H 0.079 0.921 29 H 0.385 0.615 30 H 0.270 0.730 31 H 0.084 0.916 32 H 0.062 0.938 33 H 0.099 0.901 34 H 0.082 0.918 35 H 0.378 0.622 36 H 0.052 0.948 37 H 0.082 0.918 38 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.936 -9.825 -4.853 11.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.001 3.999 3 C 0.342 3.658 4 O -0.454 6.454 5 N -0.347 5.347 6 C -0.015 4.015 7 C 0.190 3.810 8 O -0.377 6.377 9 C -0.576 4.576 10 H 0.089 0.911 11 C -0.130 4.130 12 N -0.528 5.528 13 Si 0.729 3.271 14 H -0.202 1.202 15 H -0.211 1.211 16 H -0.197 1.197 17 C -0.018 4.018 18 C -0.156 4.156 19 C 0.032 3.968 20 H 0.091 0.909 21 O -0.366 6.366 22 C -0.112 4.112 23 N -0.293 5.293 24 H 0.082 0.918 25 H 0.094 0.906 26 H 0.089 0.911 27 H 0.079 0.921 28 H 0.097 0.903 29 H 0.236 0.764 30 H 0.080 0.920 31 H 0.102 0.898 32 H 0.081 0.919 33 H 0.117 0.883 34 H 0.101 0.899 35 H 0.225 0.775 36 H 0.070 0.930 37 H 0.100 0.900 38 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 2.191 -9.020 -6.275 11.204 hybrid contribution -0.154 -0.568 1.613 1.717 sum 2.036 -9.588 -4.662 10.854 Atomic orbital electron populations 1.22210 0.92658 1.02463 1.04221 1.21532 0.95385 0.92620 0.90392 1.19589 0.77823 0.86279 0.82107 1.90612 1.53419 1.69966 1.31440 1.49549 1.61755 1.16334 1.07025 1.23797 0.99844 1.01420 0.76460 1.19602 0.81130 0.89432 0.90867 1.86084 1.22596 1.88889 1.40100 1.21338 1.06803 1.38298 0.91128 0.91104 1.25049 0.94870 0.93871 0.99161 1.69765 1.19784 1.35130 1.28077 0.86451 0.79280 0.79984 0.81415 1.20214 1.21113 1.19663 1.23310 0.99032 0.83713 0.95708 1.22724 0.96577 0.98724 0.97535 1.22966 0.98062 0.86372 0.89386 0.90889 1.86489 1.53251 1.39226 1.57600 1.23506 0.98623 0.92724 0.96363 1.61790 1.27683 1.23979 1.15892 0.91776 0.90609 0.91079 0.92114 0.90250 0.76381 0.92000 0.89824 0.91921 0.88277 0.89937 0.77479 0.92968 0.90009 0.83159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 8.21 37.16 0.31 -1.95 16 2 C 0.09 1.52 1.10 -131.76 -0.14 1.37 16 3 C 0.55 11.45 6.98 -10.99 -0.08 11.38 16 4 O -0.57 -13.39 16.34 5.55 0.09 -13.30 16 5 N -0.62 -13.21 3.65 -185.37 -0.68 -13.88 16 6 C 0.11 2.32 6.54 -8.64 -0.06 2.27 16 7 C 0.23 5.49 1.41 -91.40 -0.13 5.36 16 8 O -0.57 -14.18 13.56 -35.23 -0.48 -14.66 16 9 C -0.54 -13.35 8.65 -34.44 -0.30 -13.65 16 10 H 0.07 1.73 7.84 -52.48 -0.41 1.32 16 11 C 0.07 1.81 5.21 -17.82 -0.09 1.72 16 12 N -0.89 -22.05 11.81 55.43 0.65 -21.40 16 13 Si 0.90 19.24 29.55 -169.99 -5.02 14.22 16 14 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 15 H -0.29 -6.08 7.11 56.52 0.40 -5.67 16 16 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 17 C 0.10 2.33 8.03 -8.51 -0.07 2.26 16 18 C -0.12 -1.73 5.68 -24.91 -0.14 -1.87 16 19 C 0.09 1.19 4.42 -24.59 -0.11 1.09 16 20 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 21 O -0.56 -6.46 13.47 -35.23 -0.47 -6.94 16 22 C 0.02 0.21 7.31 -2.30 -0.02 0.19 16 23 N -0.66 -9.56 5.44 -98.29 -0.53 -10.10 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.06 1.31 8.09 -51.93 -0.42 0.89 16 28 H 0.08 1.73 8.10 -51.93 -0.42 1.31 16 29 H 0.39 9.58 7.09 45.56 0.32 9.90 16 30 H 0.27 6.41 8.31 -40.82 -0.34 6.07 16 31 H 0.08 1.73 8.10 -51.93 -0.42 1.31 16 32 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.10 1.66 6.76 -51.93 -0.35 1.31 16 34 H 0.08 1.11 7.86 -51.93 -0.41 0.70 16 35 H 0.38 2.58 9.12 45.56 0.42 2.99 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.35 4.70 8.23 -39.29 -0.32 4.37 16 LS Contribution 315.18 15.07 4.75 4.75 Total: -1.00 -29.00 315.18 -6.63 -35.63 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: -4.11 Total: 17.51 kcal Atomic # 6 Polarization: 9.00 SS G_CDS: -0.83 Total: 8.17 kcal Atomic # 7 Polarization: -44.82 SS G_CDS: -0.56 Total: -45.38 kcal Atomic # 8 Polarization: -34.04 SS G_CDS: -0.86 Total: -34.90 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.02 Total: 14.22 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.00 -6.63 -35.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576330607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.411 kcal (2) G-P(sol) polarization free energy of solvation -28.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds