Wall clock time and date at job start Mon Mar 30 2020 00:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.88070 * 2 1 4 4 O 1.21283 * 119.99704 * 263.96347 * 3 2 1 5 5 N 1.34776 * 120.00620 * 83.96551 * 3 2 1 6 6 C 1.47068 * 136.05370 * 359.62575 * 5 3 2 7 7 C 1.53238 * 88.08302 * 207.20705 * 6 5 3 8 8 O 1.42905 * 114.01771 * 87.71230 * 7 6 5 9 9 C 1.50696 * 114.32869 * 220.46890 * 7 6 5 10 10 H 1.08005 * 119.99476 * 99.23482 * 9 7 6 11 11 C 1.37872 * 120.00225 * 279.23925 * 9 7 6 12 12 N 1.31511 * 119.99867 * 10.19063 * 11 9 7 13 13 Si 1.86806 * 120.00056 * 190.19160 * 11 9 7 14 14 H 1.48509 * 109.46863 * 84.99442 * 13 11 9 15 15 H 1.48493 * 109.47101 * 204.99460 * 13 11 9 16 16 H 1.48502 * 109.46924 * 324.99682 * 13 11 9 17 17 C 1.47068 * 136.05980 * 180.02562 * 5 3 2 18 18 C 1.54313 * 109.89245 * 238.95901 * 2 1 3 19 19 C 1.55141 * 103.02276 * 218.15029 * 18 2 1 20 20 H 1.08998 * 110.99340 * 277.53025 * 19 18 2 21 21 O 1.42897 * 110.99073 * 153.74431 * 19 18 2 22 22 C 1.54909 * 101.65169 * 35.65454 * 19 18 2 23 23 N 1.47453 * 110.01941 * 121.11047 * 2 1 3 24 24 H 1.08996 * 109.47383 * 181.03536 * 1 2 3 25 25 H 1.08997 * 109.47223 * 301.03859 * 1 2 3 26 26 H 1.09001 * 109.46609 * 61.03931 * 1 2 3 27 27 H 1.08997 * 113.46669 * 321.93679 * 6 5 3 28 28 H 1.09002 * 113.46912 * 92.38154 * 6 5 3 29 29 H 0.96703 * 113.99435 * 90.40838 * 8 7 6 30 30 H 0.97001 * 119.99776 * 180.02562 * 12 11 9 31 31 H 1.09000 * 113.46615 * 267.62120 * 17 5 3 32 32 H 1.09004 * 113.46827 * 38.00328 * 17 5 3 33 33 H 1.08997 * 110.70451 * 99.76897 * 18 2 1 34 34 H 1.09003 * 110.85561 * 336.60559 * 18 2 1 35 35 H 0.96702 * 114.00158 * 179.97438 * 21 19 18 36 36 H 1.09005 * 110.37206 * 81.75922 * 22 19 18 37 37 H 1.08993 * 110.37552 * 204.10199 * 22 19 18 38 38 H 1.00901 * 110.99680 * 356.22541 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0425 1.4172 0.0000 4 8 2.3525 1.9498 -1.0446 5 7 2.1563 2.0927 1.1607 6 6 1.8885 1.8128 2.5794 7 6 1.6676 3.3157 2.7811 8 8 0.3261 3.7443 2.5382 9 6 2.2488 3.8626 4.0594 10 1 3.2017 4.3708 4.0453 11 6 1.5642 3.7142 5.2469 12 7 0.5110 2.9286 5.3049 13 14 2.1324 4.6288 6.7733 14 1 1.5536 5.9964 6.7751 15 1 1.6807 3.8985 7.9848 16 1 3.6147 4.7187 6.7734 17 6 2.5963 3.4365 1.5650 18 6 2.0551 -0.7482 -1.2433 19 6 3.2917 -1.5092 -0.6969 20 1 4.1670 -0.8604 -0.6657 21 8 3.5542 -2.6816 -1.4705 22 6 2.8242 -1.8807 0.7324 23 7 2.0348 -0.7158 1.1862 24 1 -0.3634 -1.0274 0.0186 25 1 -0.3633 0.5299 0.8805 26 1 -0.3632 0.4976 -0.8992 27 1 0.9898 1.2179 2.7423 28 1 2.7543 1.4254 3.1164 29 1 -0.2407 3.7249 3.3214 30 1 0.0291 2.8245 6.1403 31 1 3.6527 3.4862 1.8289 32 1 2.2990 4.2190 0.8668 33 1 2.3488 -0.0438 -2.0214 34 1 1.3080 -1.4470 -1.6199 35 1 4.3187 -3.1902 -1.1670 36 1 2.2012 -2.7748 0.7075 37 1 3.6836 -2.0340 1.3850 38 1 1.2754 -1.0045 1.7846 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001576330607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:49 Heat of formation + Delta-G solvation = -113.529258 kcal Electronic energy + Delta-G solvation = -22013.140569 eV Core-core repulsion = 18662.943407 eV Total energy + Delta-G solvation = -3350.197162 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.69832 -40.16514 -38.63638 -36.80613 -35.83064 -34.18027 -32.20638 -30.78513 -30.01225 -27.34222 -26.73168 -26.41787 -23.53906 -22.24767 -21.31470 -19.73726 -19.18332 -18.42858 -17.95957 -17.36206 -16.92978 -16.70020 -16.07553 -15.95020 -15.50505 -15.04735 -14.69877 -14.59822 -14.25413 -14.17374 -13.83756 -13.73647 -13.54115 -13.32422 -13.05628 -12.98702 -12.76108 -12.57986 -12.42863 -12.22153 -12.09136 -11.78574 -11.30093 -11.04781 -10.83677 -10.70879 -10.17767 -9.55873 -9.42292 -8.23211 -6.37570 1.48522 1.52705 1.59663 1.62825 2.07150 2.44399 2.77162 2.98523 3.33845 3.44459 3.52575 3.66280 3.75635 4.04035 4.05977 4.23276 4.29070 4.51206 4.52180 4.59913 4.65319 4.72415 4.80867 4.88374 4.96428 4.97764 5.00771 5.09368 5.16955 5.32992 5.63971 5.74935 5.94969 6.26508 6.65996 6.79663 6.98481 7.22216 7.34514 7.35463 8.82376 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.029832 B = 0.005191 C = 0.004966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.377069 B = 5392.846294 C = 5636.829415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.102 3.898 3 C 0.543 3.457 4 O -0.606 6.606 5 N -0.618 5.618 6 C 0.130 3.870 7 C 0.215 3.785 8 O -0.578 6.578 9 C -0.559 4.559 10 H 0.068 0.932 11 C 0.040 3.960 12 N -0.904 5.904 13 Si 0.960 3.040 14 H -0.278 1.278 15 H -0.281 1.281 16 H -0.270 1.270 17 C 0.101 3.899 18 C -0.116 4.116 19 C 0.099 3.901 20 H 0.058 0.942 21 O -0.567 6.567 22 C 0.026 3.974 23 N -0.673 5.673 24 H 0.098 0.902 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.079 0.921 29 H 0.383 0.617 30 H 0.273 0.727 31 H 0.096 0.904 32 H 0.050 0.950 33 H 0.073 0.927 34 H 0.100 0.900 35 H 0.400 0.600 36 H 0.073 0.927 37 H 0.094 0.906 38 H 0.357 0.643 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.111 -11.514 -4.118 12.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.007 3.993 3 C 0.333 3.667 4 O -0.489 6.489 5 N -0.349 5.349 6 C 0.008 3.992 7 C 0.174 3.826 8 O -0.387 6.387 9 C -0.596 4.596 10 H 0.086 0.914 11 C -0.162 4.162 12 N -0.542 5.542 13 Si 0.786 3.214 14 H -0.204 1.204 15 H -0.207 1.207 16 H -0.195 1.195 17 C -0.022 4.022 18 C -0.155 4.155 19 C 0.039 3.961 20 H 0.076 0.924 21 O -0.374 6.374 22 C -0.103 4.103 23 N -0.307 5.307 24 H 0.117 0.883 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.097 0.903 29 H 0.233 0.767 30 H 0.083 0.917 31 H 0.114 0.886 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.119 0.881 35 H 0.250 0.750 36 H 0.091 0.909 37 H 0.112 0.888 38 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 2.379 -10.740 -5.536 12.315 hybrid contribution -0.184 -0.041 1.337 1.350 sum 2.196 -10.780 -4.199 11.776 Atomic orbital electron populations 1.22184 0.91303 1.04352 1.03123 1.21402 0.96205 0.89855 0.91798 1.20607 0.76897 0.88047 0.81108 1.90585 1.54684 1.71267 1.32401 1.49620 1.61965 1.15924 1.07373 1.23459 0.99593 0.99806 0.76378 1.19809 0.80656 0.90934 0.91208 1.86074 1.23299 1.89243 1.40093 1.21513 1.07121 1.39100 0.91916 0.91361 1.25642 0.94976 0.94258 1.01330 1.69819 1.20198 1.35411 1.28788 0.85536 0.78812 0.78614 0.78437 1.20395 1.20686 1.19457 1.23325 0.99522 0.84268 0.95060 1.22671 0.98002 0.98592 0.96227 1.22742 0.96685 0.86678 0.90024 0.92439 1.86443 1.54660 1.38700 1.57642 1.23526 0.98939 0.92319 0.95555 1.61671 1.28170 1.25377 1.15489 0.88332 0.92259 0.91637 0.92163 0.90294 0.76659 0.91709 0.88567 0.93143 0.90808 0.88123 0.74978 0.90877 0.88794 0.82307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.12 8.21 71.98 0.59 -3.53 16 2 C 0.10 3.14 1.10 3.12 0.00 3.14 16 3 C 0.54 22.55 6.98 87.66 0.61 23.16 16 4 O -0.61 -28.89 16.34 -3.04 -0.05 -28.94 16 5 N -0.62 -26.62 3.65 -859.25 -3.14 -29.76 16 6 C 0.13 5.59 6.54 83.09 0.54 6.13 16 7 C 0.21 10.27 1.41 -11.30 -0.02 10.25 16 8 O -0.58 -29.26 13.56 -148.98 -2.02 -31.28 16 9 C -0.56 -27.66 8.65 25.60 0.22 -27.44 16 10 H 0.07 3.33 7.84 -2.91 -0.02 3.31 16 11 C 0.04 1.94 5.21 84.65 0.44 2.38 16 12 N -0.90 -44.23 11.81 21.45 0.25 -43.97 16 13 Si 0.96 38.81 29.55 68.60 2.03 40.84 16 14 H -0.28 -11.27 7.11 99.48 0.71 -10.56 16 15 H -0.28 -11.13 7.11 99.48 0.71 -10.42 16 16 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 17 C 0.10 4.56 8.03 83.18 0.67 5.23 16 18 C -0.12 -3.28 5.68 31.77 0.18 -3.10 16 19 C 0.10 2.37 4.42 31.98 0.14 2.51 16 20 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 21 O -0.57 -11.50 13.47 -148.98 -2.01 -13.51 16 22 C 0.03 0.54 7.31 86.77 0.63 1.17 16 23 N -0.67 -18.14 5.44 -464.88 -2.53 -20.66 16 24 H 0.10 1.99 8.14 -2.39 -0.02 1.98 16 25 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.06 2.57 8.09 -2.39 -0.02 2.55 16 28 H 0.08 3.39 8.10 -2.39 -0.02 3.37 16 29 H 0.38 19.28 7.09 -74.06 -0.53 18.76 16 30 H 0.27 12.71 8.31 -92.71 -0.77 11.93 16 31 H 0.10 4.02 8.10 -2.39 -0.02 4.00 16 32 H 0.05 2.35 8.14 -2.38 -0.02 2.33 16 33 H 0.07 2.47 6.76 -2.39 -0.02 2.46 16 34 H 0.10 2.45 7.86 -2.39 -0.02 2.44 16 35 H 0.40 4.23 9.12 -74.06 -0.68 3.56 16 36 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 37 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.36 8.72 8.23 -89.69 -0.74 7.98 16 Total: -1.00 -61.28 315.18 -4.28 -65.57 By element: Atomic # 1 Polarization: 42.64 SS G_CDS: -0.84 Total: 41.80 kcal Atomic # 6 Polarization: 15.90 SS G_CDS: 4.02 Total: 19.92 kcal Atomic # 7 Polarization: -88.98 SS G_CDS: -5.41 Total: -94.40 kcal Atomic # 8 Polarization: -69.65 SS G_CDS: -4.08 Total: -73.73 kcal Atomic # 14 Polarization: 38.81 SS G_CDS: 2.03 Total: 40.84 kcal Total: -61.28 -4.28 -65.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576330607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.964 kcal (2) G-P(sol) polarization free energy of solvation -61.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds