Wall clock time and date at job start Mon Mar 30 2020 00:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86806 * 119.99752 * 2 1 4 4 H 1.48505 * 109.46969 * 269.99926 * 3 2 1 5 5 H 1.48495 * 109.47142 * 30.00389 * 3 2 1 6 6 H 1.48497 * 109.47093 * 150.00090 * 3 2 1 7 7 C 1.37878 * 120.00648 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00353 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99440 * 0.02562 * 7 2 1 10 10 O 1.42902 * 110.91607 * 303.90000 * 9 7 2 11 11 C 1.55154 * 111.00686 * 67.80199 * 9 7 2 12 12 C 1.54325 * 102.94303 * 153.57472 * 11 9 7 13 13 N 1.47290 * 107.30599 * 337.81911 * 12 11 9 14 14 C 1.34774 * 125.79121 * 178.92556 * 13 12 11 15 15 O 1.21284 * 119.99787 * 179.97438 * 14 13 12 16 16 C 1.50700 * 120.00339 * 359.97438 * 14 13 12 17 17 H 1.09003 * 109.86754 * 55.44876 * 16 14 13 18 18 O 1.43743 * 109.88007 * 176.45612 * 16 14 13 19 19 C 1.44381 * 106.97503 * 145.94211 * 18 16 14 20 20 C 1.55000 * 103.48872 * 319.93917 * 19 18 16 21 21 C 1.54095 * 109.88089 * 294.28899 * 16 14 13 22 22 H 1.09002 * 110.49304 * 119.86307 * 21 16 14 23 23 N 1.46902 * 110.49036 * 357.21876 * 21 16 14 24 24 C 1.47425 * 108.55742 * 358.92448 * 13 12 11 25 25 H 0.97002 * 120.00229 * 359.97438 * 1 2 3 26 26 H 0.96703 * 113.99784 * 56.09771 * 10 9 7 27 27 H 1.09002 * 110.72290 * 271.94159 * 11 9 7 28 28 H 1.08994 * 110.71922 * 35.03627 * 11 9 7 29 29 H 1.09004 * 109.88239 * 97.22707 * 12 11 9 30 30 H 1.08995 * 109.88239 * 218.23629 * 12 11 9 31 31 H 1.08994 * 110.61872 * 78.43955 * 19 18 16 32 32 H 1.08993 * 110.61503 * 201.28054 * 19 18 16 33 33 H 1.08994 * 110.90566 * 155.22683 * 20 19 18 34 34 H 1.09003 * 110.90418 * 278.79102 * 20 19 18 35 35 H 1.00899 * 111.00368 * 179.97438 * 23 21 16 36 36 H 1.00896 * 110.99990 * 303.96065 * 23 21 16 37 37 H 1.09002 * 110.36696 * 265.26054 * 24 13 12 38 38 H 1.08995 * 110.36608 * 143.04891 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 8 0.3508 -2.5694 1.1058 11 6 0.4996 -2.7063 -1.3432 12 6 0.3981 -4.2426 -1.4489 13 7 1.4607 -4.8111 -0.6020 14 6 1.6955 -6.1239 -0.4071 15 8 2.6036 -6.4767 0.3153 16 6 0.8297 -7.1533 -1.0866 17 1 0.8315 -6.9862 -2.1637 18 8 1.3197 -8.4730 -0.7958 19 6 0.1694 -9.3420 -0.7175 20 6 -0.8833 -8.4821 0.0273 21 6 -0.6096 -7.0690 -0.5426 22 1 -1.3088 -6.8400 -1.3469 23 7 -0.6991 -6.0596 0.5210 24 6 2.2259 -3.7030 -0.0021 25 1 -0.4850 0.8400 0.0004 26 1 -0.2787 -1.8366 1.1481 27 1 -0.4923 -2.2561 -1.3032 28 1 1.0740 -2.2970 -2.1742 29 1 -0.5769 -4.5751 -1.0927 30 1 0.5401 -4.5531 -2.4840 31 1 -0.1838 -9.6021 -1.7153 32 1 0.4059 -10.2413 -0.1488 33 1 -1.8944 -8.8098 -0.2141 34 1 -0.7149 -8.5073 1.1039 35 1 -1.6390 -5.9976 0.8826 36 1 -0.0391 -6.2528 1.2593 37 1 3.1054 -3.4788 -0.6058 38 1 2.5201 -3.9533 1.0171 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580047881.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:50 Heat of formation + Delta-G solvation = -112.656958 kcal Electronic energy + Delta-G solvation = -22289.333179 eV Core-core repulsion = 18939.173843 eV Total energy + Delta-G solvation = -3350.159336 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.34774 -38.43513 -36.80489 -34.62484 -33.85210 -32.05613 -30.51785 -29.64150 -28.46126 -27.72738 -25.04984 -23.12573 -22.20113 -21.13386 -19.61876 -18.63813 -17.49484 -17.03658 -16.56852 -15.88746 -15.20741 -14.91685 -14.75018 -14.51759 -14.33997 -13.91091 -13.69967 -13.16449 -12.89715 -12.78925 -12.17316 -11.92679 -11.70293 -11.51126 -11.34367 -11.31020 -11.23278 -11.13419 -10.75325 -10.48755 -10.43846 -10.05908 -9.92002 -9.33004 -9.02431 -8.61640 -8.53337 -8.07212 -7.72380 -6.24544 -4.31737 3.15909 3.21981 3.29324 3.31348 3.36769 4.10160 4.26408 4.31234 4.58138 4.71333 4.90093 4.97430 5.05583 5.08505 5.31097 5.50608 5.53278 5.57038 5.75142 5.81544 5.89621 6.06901 6.24285 6.50521 6.57418 6.70444 6.83115 7.04513 7.14526 7.16112 7.41738 7.43894 7.48199 7.79899 8.08185 8.33559 8.69853 8.83461 9.37430 9.59642 10.82612 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.042512 B = 0.005089 C = 0.004859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.478413 B = 5501.092795 C = 5761.249193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.073 3.927 3 Si 0.901 3.099 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.535 4.535 8 H 0.063 0.937 9 C 0.255 3.745 10 O -0.577 6.577 11 C -0.138 4.138 12 C 0.099 3.901 13 N -0.580 5.580 14 C 0.534 3.466 15 O -0.551 6.551 16 C 0.063 3.937 17 H 0.092 0.908 18 O -0.349 6.349 19 C 0.046 3.954 20 C -0.192 4.192 21 C 0.072 3.928 22 H 0.101 0.899 23 N -0.820 5.820 24 C 0.122 3.878 25 H 0.268 0.732 26 H 0.382 0.618 27 H 0.079 0.921 28 H 0.060 0.940 29 H 0.085 0.915 30 H 0.038 0.962 31 H 0.062 0.938 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.345 0.655 36 H 0.349 0.651 37 H 0.066 0.934 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.129 -12.202 -3.710 14.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.129 4.129 3 Si 0.729 3.271 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.574 4.574 8 H 0.082 0.918 9 C 0.214 3.786 10 O -0.387 6.387 11 C -0.177 4.177 12 C -0.024 4.024 13 N -0.312 5.312 14 C 0.320 3.680 15 O -0.430 6.430 16 C 0.001 3.999 17 H 0.109 0.891 18 O -0.267 6.267 19 C -0.031 4.031 20 C -0.232 4.232 21 C -0.041 4.041 22 H 0.119 0.881 23 N -0.351 5.351 24 C 0.001 3.999 25 H 0.078 0.922 26 H 0.233 0.767 27 H 0.098 0.902 28 H 0.079 0.921 29 H 0.104 0.896 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.111 0.889 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.159 0.841 36 H 0.164 0.836 37 H 0.084 0.916 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.014 -12.412 -3.722 13.894 hybrid contribution -0.496 0.680 0.233 0.873 sum -5.510 -11.732 -3.489 13.423 Atomic orbital electron populations 1.69571 1.05935 1.27544 1.50689 1.24962 0.94976 0.99403 0.93581 0.86443 0.79931 0.82565 0.78182 1.20535 1.21081 1.19724 1.21545 0.93771 0.90495 1.51547 0.91842 1.19474 0.85958 0.90297 0.82900 1.86117 1.50749 1.52409 1.49380 1.23143 1.02673 0.90712 1.01129 1.22325 0.92185 0.96337 0.91581 1.48238 1.32307 1.03977 1.46659 1.19441 0.84363 0.82026 0.82139 1.90675 1.32750 1.80086 1.39522 1.22717 0.92900 0.84567 0.99676 0.89083 1.89031 1.28657 1.16460 1.92522 1.23512 0.85888 0.94172 0.99550 1.24050 1.00326 0.97269 1.01568 1.22776 0.95293 0.89686 0.96358 0.88059 1.58835 1.11330 1.48583 1.16315 1.22321 0.94328 0.85473 0.97810 0.92225 0.76656 0.90198 0.92084 0.89644 0.94393 0.91958 0.88858 0.89877 0.90342 0.84082 0.83629 0.91631 0.91435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.98 10.79 55.43 0.60 -22.38 16 2 C 0.07 1.86 5.30 -17.82 -0.09 1.77 16 3 Si 0.90 20.20 29.54 -169.99 -5.02 15.18 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.54 -13.95 8.25 -34.44 -0.28 -14.23 16 8 H 0.06 1.66 7.77 -52.49 -0.41 1.25 16 9 C 0.25 6.10 0.89 -89.62 -0.08 6.02 16 10 O -0.58 -14.47 13.18 -35.23 -0.46 -14.94 16 11 C -0.14 -2.95 5.64 -24.90 -0.14 -3.09 16 12 C 0.10 1.78 5.99 -2.92 -0.02 1.76 16 13 N -0.58 -11.53 2.87 -170.31 -0.49 -12.02 16 14 C 0.53 10.53 5.62 -10.99 -0.06 10.47 16 15 O -0.55 -13.05 16.78 -14.01 -0.24 -13.28 16 16 C 0.06 0.96 3.27 -27.31 -0.09 0.87 16 17 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 18 O -0.35 -5.52 10.74 -54.80 -0.59 -6.11 16 19 C 0.05 0.49 7.72 38.21 0.29 0.78 16 20 C -0.19 -1.87 6.86 -24.72 -0.17 -2.04 16 21 C 0.07 0.85 3.21 -66.19 -0.21 0.64 16 22 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 23 N -0.82 -11.18 5.93 -3.37 -0.02 -11.20 16 24 C 0.12 2.78 6.07 -2.53 -0.02 2.77 16 25 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 26 H 0.38 9.79 6.93 45.56 0.32 10.11 16 27 H 0.08 1.79 7.85 -51.93 -0.41 1.38 16 28 H 0.06 1.32 8.03 -51.93 -0.42 0.91 16 29 H 0.09 1.45 5.71 -51.93 -0.30 1.16 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.82 8.02 -51.93 -0.42 0.41 16 35 H 0.35 3.93 9.08 -39.29 -0.36 3.58 16 36 H 0.35 5.53 7.95 -39.29 -0.31 5.22 16 37 H 0.07 1.47 8.01 -51.93 -0.42 1.05 16 38 H 0.07 1.64 8.03 -51.93 -0.42 1.23 16 LS Contribution 304.50 15.07 4.59 4.59 Total: -1.00 -29.81 304.50 -7.30 -37.12 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: -4.80 Total: 17.32 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: -0.87 Total: 5.72 kcal Atomic # 7 Polarization: -45.69 SS G_CDS: 0.09 Total: -45.60 kcal Atomic # 8 Polarization: -33.04 SS G_CDS: -1.29 Total: -34.33 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.81 -7.30 -37.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580047881.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.540 kcal (2) G-P(sol) polarization free energy of solvation -29.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds