Wall clock time and date at job start Mon Mar 30 2020 00:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86806 * 119.99752 * 2 1 4 4 H 1.48505 * 109.46969 * 269.99926 * 3 2 1 5 5 H 1.48495 * 109.47142 * 30.00389 * 3 2 1 6 6 H 1.48497 * 109.47093 * 150.00090 * 3 2 1 7 7 C 1.37878 * 120.00648 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00353 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99440 * 0.02562 * 7 2 1 10 10 O 1.42902 * 110.91607 * 303.90000 * 9 7 2 11 11 C 1.55154 * 111.00686 * 67.80199 * 9 7 2 12 12 C 1.54325 * 102.94303 * 153.57472 * 11 9 7 13 13 N 1.47290 * 107.30599 * 337.81911 * 12 11 9 14 14 C 1.34774 * 125.79121 * 178.92556 * 13 12 11 15 15 O 1.21284 * 119.99787 * 179.97438 * 14 13 12 16 16 C 1.50700 * 120.00339 * 359.97438 * 14 13 12 17 17 H 1.09003 * 109.86754 * 55.44876 * 16 14 13 18 18 O 1.43743 * 109.88007 * 176.45612 * 16 14 13 19 19 C 1.44381 * 106.97503 * 145.94211 * 18 16 14 20 20 C 1.55000 * 103.48872 * 319.93917 * 19 18 16 21 21 C 1.54095 * 109.88089 * 294.28899 * 16 14 13 22 22 H 1.09002 * 110.49304 * 119.86307 * 21 16 14 23 23 N 1.46902 * 110.49036 * 357.21876 * 21 16 14 24 24 C 1.47425 * 108.55742 * 358.92448 * 13 12 11 25 25 H 0.97002 * 120.00229 * 359.97438 * 1 2 3 26 26 H 0.96703 * 113.99784 * 56.09771 * 10 9 7 27 27 H 1.09002 * 110.72290 * 271.94159 * 11 9 7 28 28 H 1.08994 * 110.71922 * 35.03627 * 11 9 7 29 29 H 1.09004 * 109.88239 * 97.22707 * 12 11 9 30 30 H 1.08995 * 109.88239 * 218.23629 * 12 11 9 31 31 H 1.08994 * 110.61872 * 78.43955 * 19 18 16 32 32 H 1.08993 * 110.61503 * 201.28054 * 19 18 16 33 33 H 1.08994 * 110.90566 * 155.22683 * 20 19 18 34 34 H 1.09003 * 110.90418 * 278.79102 * 20 19 18 35 35 H 1.00899 * 111.00368 * 179.97438 * 23 21 16 36 36 H 1.00896 * 110.99990 * 303.96065 * 23 21 16 37 37 H 1.09002 * 110.36696 * 265.26054 * 24 13 12 38 38 H 1.08995 * 110.36608 * 143.04891 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 8 0.3508 -2.5694 1.1058 11 6 0.4996 -2.7063 -1.3432 12 6 0.3981 -4.2426 -1.4489 13 7 1.4607 -4.8111 -0.6020 14 6 1.6955 -6.1239 -0.4071 15 8 2.6036 -6.4767 0.3153 16 6 0.8297 -7.1533 -1.0866 17 1 0.8315 -6.9862 -2.1637 18 8 1.3197 -8.4730 -0.7958 19 6 0.1694 -9.3420 -0.7175 20 6 -0.8833 -8.4821 0.0273 21 6 -0.6096 -7.0690 -0.5426 22 1 -1.3088 -6.8400 -1.3469 23 7 -0.6991 -6.0596 0.5210 24 6 2.2259 -3.7030 -0.0021 25 1 -0.4850 0.8400 0.0004 26 1 -0.2787 -1.8366 1.1481 27 1 -0.4923 -2.2561 -1.3032 28 1 1.0740 -2.2970 -2.1742 29 1 -0.5769 -4.5751 -1.0927 30 1 0.5401 -4.5531 -2.4840 31 1 -0.1838 -9.6021 -1.7153 32 1 0.4059 -10.2413 -0.1488 33 1 -1.8944 -8.8098 -0.2141 34 1 -0.7149 -8.5073 1.1039 35 1 -1.6390 -5.9976 0.8826 36 1 -0.0391 -6.2528 1.2593 37 1 3.1054 -3.4788 -0.6058 38 1 2.5201 -3.9533 1.0171 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580047881.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:49 Heat of formation + Delta-G solvation = -136.309790 kcal Electronic energy + Delta-G solvation = -22290.358842 eV Core-core repulsion = 18939.173843 eV Total energy + Delta-G solvation = -3351.185000 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.61034 -39.88236 -38.49731 -36.10981 -35.21440 -34.04867 -31.81344 -30.97621 -29.97203 -29.17268 -26.83383 -24.42864 -23.38978 -22.25680 -21.43113 -20.12905 -19.10485 -18.42896 -17.93339 -17.23282 -16.86900 -16.50036 -16.00270 -15.85988 -15.73938 -15.39781 -14.83273 -14.72936 -14.53431 -13.84750 -13.77054 -13.55116 -13.43339 -13.13504 -12.94352 -12.55256 -12.44953 -12.41658 -12.34613 -12.24098 -12.10890 -11.72483 -11.21366 -11.14619 -10.62300 -10.44681 -10.00707 -9.56853 -9.32493 -8.20290 -6.34308 1.43261 1.46584 1.55259 1.67796 1.97041 2.42643 3.02479 3.04962 3.25218 3.60923 3.70442 3.84812 3.96410 4.11520 4.19087 4.24722 4.26638 4.45510 4.55728 4.67066 4.71223 4.78966 4.83015 4.87265 5.04045 5.09999 5.33779 5.41197 5.56717 5.62905 5.79049 5.85470 6.08512 6.14354 6.50171 6.67856 6.79370 7.27735 7.37318 7.58966 8.85310 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.042512 B = 0.005089 C = 0.004859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.478413 B = 5501.092795 C = 5761.249193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.039 3.961 3 Si 0.957 3.043 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.565 4.565 8 H 0.051 0.949 9 C 0.245 3.755 10 O -0.584 6.584 11 C -0.128 4.128 12 C 0.107 3.893 13 N -0.578 5.578 14 C 0.528 3.472 15 O -0.601 6.601 16 C 0.067 3.933 17 H 0.115 0.885 18 O -0.386 6.386 19 C 0.039 3.961 20 C -0.181 4.181 21 C 0.075 3.925 22 H 0.133 0.867 23 N -0.834 5.834 24 C 0.126 3.874 25 H 0.272 0.728 26 H 0.377 0.623 27 H 0.070 0.930 28 H 0.054 0.946 29 H 0.102 0.898 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.102 0.898 33 H 0.117 0.883 34 H 0.065 0.935 35 H 0.357 0.643 36 H 0.332 0.668 37 H 0.062 0.938 38 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.904 -13.013 -5.232 16.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.162 4.162 3 Si 0.783 3.217 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.603 4.603 8 H 0.069 0.931 9 C 0.204 3.796 10 O -0.393 6.393 11 C -0.167 4.167 12 C -0.014 4.014 13 N -0.309 5.309 14 C 0.317 3.683 15 O -0.483 6.483 16 C 0.006 3.994 17 H 0.132 0.868 18 O -0.304 6.304 19 C -0.037 4.037 20 C -0.220 4.220 21 C -0.037 4.037 22 H 0.150 0.850 23 N -0.365 5.365 24 C 0.003 3.997 25 H 0.081 0.919 26 H 0.228 0.772 27 H 0.088 0.912 28 H 0.073 0.927 29 H 0.120 0.880 30 H 0.089 0.911 31 H 0.109 0.891 32 H 0.120 0.880 33 H 0.136 0.864 34 H 0.084 0.916 35 H 0.173 0.827 36 H 0.145 0.855 37 H 0.080 0.920 38 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -6.834 -13.236 -5.271 15.801 hybrid contribution 0.075 0.910 0.746 1.179 sum -6.758 -12.326 -4.525 14.767 Atomic orbital electron populations 1.69623 1.06526 1.28310 1.50189 1.25543 0.95804 1.01774 0.93096 0.85578 0.78519 0.79290 0.78306 1.19802 1.20492 1.20371 1.21771 0.93537 0.92111 1.52880 0.93077 1.19577 0.86215 0.89932 0.83829 1.86110 1.50787 1.52063 1.50303 1.22940 1.01361 0.93281 0.99135 1.22354 0.92320 0.93686 0.93086 1.48242 1.32277 1.03751 1.46597 1.20406 0.84132 0.82377 0.81410 1.90640 1.35084 1.80796 1.41814 1.22798 0.93283 0.83097 1.00248 0.86774 1.89000 1.31540 1.17119 1.92785 1.23837 0.84644 0.93737 1.01502 1.23979 1.01885 0.95557 1.00592 1.22920 0.93619 0.90590 0.96584 0.84952 1.58828 1.11713 1.49723 1.16246 1.22071 0.94555 0.86521 0.96530 0.91888 0.77196 0.91170 0.92714 0.87975 0.91063 0.89147 0.87989 0.86449 0.91629 0.82721 0.85521 0.91996 0.94211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.16 10.79 21.45 0.23 -45.92 16 2 C 0.04 1.99 5.30 84.66 0.45 2.44 16 3 Si 0.96 41.33 29.54 68.60 2.03 43.36 16 4 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 6 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 7 C -0.56 -29.96 8.25 25.60 0.21 -29.75 16 8 H 0.05 2.76 7.77 -2.91 -0.02 2.73 16 9 C 0.25 11.92 0.89 -10.15 -0.01 11.91 16 10 O -0.58 -29.74 13.18 -148.98 -1.96 -31.71 16 11 C -0.13 -5.40 5.64 31.78 0.18 -5.23 16 12 C 0.11 3.65 5.99 86.68 0.52 4.17 16 13 N -0.58 -22.75 2.87 -811.11 -2.33 -25.08 16 14 C 0.53 20.69 5.62 87.66 0.49 21.18 16 15 O -0.60 -29.28 16.78 15.67 0.26 -29.01 16 16 C 0.07 1.88 3.27 30.22 0.10 1.98 16 17 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 18 O -0.39 -11.59 10.74 -130.27 -1.40 -12.98 16 19 C 0.04 0.70 7.72 72.67 0.56 1.26 16 20 C -0.18 -2.89 6.86 31.89 0.22 -2.68 16 21 C 0.08 1.54 3.21 45.90 0.15 1.69 16 22 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 23 N -0.83 -21.37 5.93 -164.59 -0.98 -22.35 16 24 C 0.13 5.92 6.07 86.85 0.53 6.44 16 25 H 0.27 13.14 8.31 -92.71 -0.77 12.37 16 26 H 0.38 19.60 6.93 -74.06 -0.51 19.09 16 27 H 0.07 3.08 7.85 -2.39 -0.02 3.06 16 28 H 0.05 2.34 8.03 -2.39 -0.02 2.32 16 29 H 0.10 3.17 5.71 -2.38 -0.01 3.16 16 30 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.06 1.24 8.02 -2.39 -0.02 1.22 16 35 H 0.36 7.41 9.08 -89.69 -0.81 6.60 16 36 H 0.33 10.50 7.95 -89.70 -0.71 9.79 16 37 H 0.06 2.89 8.01 -2.39 -0.02 2.87 16 38 H 0.04 2.04 8.03 -2.39 -0.02 2.02 16 Total: -1.00 -66.25 304.50 -1.69 -67.94 By element: Atomic # 1 Polarization: 43.28 SS G_CDS: -0.94 Total: 42.34 kcal Atomic # 6 Polarization: 10.02 SS G_CDS: 3.39 Total: 13.41 kcal Atomic # 7 Polarization: -90.27 SS G_CDS: -3.08 Total: -93.35 kcal Atomic # 8 Polarization: -70.61 SS G_CDS: -3.10 Total: -73.71 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.36 kcal Total: -66.25 -1.69 -67.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580047881.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.366 kcal (2) G-P(sol) polarization free energy of solvation -66.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds