Wall clock time and date at job start Mon Mar 30 2020 02:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47071 * 2 1 4 4 C 1.50700 * 109.47103 * 119.99208 * 2 1 3 5 5 H 1.08008 * 119.99379 * 116.61975 * 4 2 1 6 6 C 1.37870 * 120.00498 * 296.62194 * 4 2 1 7 7 N 1.31511 * 119.99834 * 347.40365 * 6 4 2 8 8 Si 1.86801 * 120.00323 * 167.40519 * 6 4 2 9 9 H 1.48507 * 109.46935 * 89.99679 * 8 6 4 10 10 H 1.48508 * 109.46917 * 330.00380 * 8 6 4 11 11 H 1.48487 * 109.47506 * 210.00126 * 8 6 4 12 12 C 1.50698 * 109.47481 * 239.99821 * 2 1 3 13 13 O 1.21279 * 119.99908 * 278.38348 * 12 2 1 14 14 N 1.34771 * 119.99935 * 98.38192 * 12 2 1 15 15 C 1.47606 * 118.74967 * 5.05427 * 14 12 2 16 16 C 1.53457 * 111.49958 * 221.59632 * 15 14 12 17 17 C 1.51275 * 109.49085 * 40.30469 * 16 15 14 18 18 N 1.46193 * 109.10266 * 267.50269 * 17 16 15 19 19 C 1.41448 * 116.34210 * 87.02682 * 18 17 16 20 20 C 1.44893 * 118.74385 * 185.32938 * 14 12 2 21 21 H 1.08997 * 109.43169 * 210.31101 * 20 14 12 22 22 C 1.50698 * 109.43504 * 330.18015 * 20 14 12 23 23 O 1.20831 * 119.99827 * 329.91728 * 22 20 14 24 24 O 1.34232 * 120.00065 * 149.91347 * 22 20 14 25 25 H 1.08999 * 109.47335 * 308.23831 * 1 2 3 26 26 H 1.08998 * 109.47018 * 68.24115 * 1 2 3 27 27 H 1.08999 * 109.46917 * 188.24235 * 1 2 3 28 28 H 0.96998 * 120.00453 * 1.66870 * 7 6 4 29 29 H 1.09001 * 109.11278 * 342.17614 * 15 14 12 30 30 H 1.08995 * 109.11449 * 101.23692 * 15 14 12 31 31 H 1.09004 * 109.59009 * 280.25591 * 16 15 14 32 32 H 1.09001 * 109.41672 * 160.25147 * 16 15 14 33 33 H 1.08995 * 109.53136 * 147.61283 * 17 16 15 34 34 H 1.08997 * 109.58884 * 27.43108 * 17 16 15 35 35 H 1.00901 * 110.99850 * 215.22549 * 18 17 16 36 36 H 1.08999 * 109.38438 * 176.35731 * 19 18 17 37 37 H 1.09001 * 109.38907 * 56.67277 * 19 18 17 38 38 H 0.96698 * 116.99944 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 1.2306 5 1 2.6075 -1.6192 1.1324 6 6 1.7577 -0.1999 2.4815 7 7 1.2804 1.0194 2.6040 8 14 2.0636 -1.2403 4.0026 9 1 3.4491 -1.0135 4.4869 10 1 1.8861 -2.6754 3.6645 11 1 1.0991 -0.8591 5.0653 12 6 2.0324 -0.7104 -1.2304 13 8 2.0902 -1.9217 -1.2501 14 7 2.4175 0.0003 -2.3088 15 6 2.4430 1.4732 -2.2163 16 6 1.8915 2.1264 -3.4907 17 6 0.6879 1.3492 -3.9760 18 7 1.1259 0.3429 -4.9419 19 6 1.5350 -0.9020 -4.4094 20 6 2.7848 -0.7105 -3.5168 21 1 3.5348 -0.1369 -4.0612 22 6 3.3523 -2.0582 -3.1527 23 8 3.9373 -2.2045 -2.1057 24 8 3.2078 -3.0962 -3.9915 25 1 -0.3634 0.6360 0.8072 26 1 -0.3633 0.3810 -0.9544 27 1 -0.3633 -1.0171 0.1473 28 1 1.0988 1.5509 1.8132 29 1 1.8400 1.7878 -1.3645 30 1 3.4708 1.8036 -2.0660 31 1 2.6599 2.1254 -4.2638 32 1 1.5970 3.1531 -3.2732 33 1 -0.0172 2.0298 -4.4531 34 1 0.2053 0.8578 -3.1312 35 1 0.4382 0.2166 -5.6694 36 1 1.7744 -1.5835 -5.2257 37 1 0.7259 -1.3241 -3.8133 38 1 3.5884 -3.9408 -3.7145 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592210460.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:31 Heat of formation + Delta-G solvation = -101.280189 kcal Electronic energy + Delta-G solvation = -22747.745524 eV Core-core repulsion = 19398.079521 eV Total energy + Delta-G solvation = -3349.666002 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.82080 -38.77246 -37.47020 -35.57979 -34.39991 -34.03582 -32.70336 -30.32755 -28.09697 -26.15102 -24.99194 -23.08710 -22.76704 -20.95699 -20.80716 -18.52404 -17.77198 -17.18889 -16.57733 -16.35570 -15.86886 -15.26557 -15.13003 -14.62208 -14.58576 -13.78969 -13.56625 -13.20390 -13.05546 -12.89321 -12.47953 -12.31438 -11.96590 -11.47389 -11.43832 -11.32013 -11.02647 -10.98927 -10.83676 -10.68036 -10.53492 -10.19628 -10.05525 -9.97812 -8.76257 -8.49637 -8.40086 -8.21880 -8.19352 -6.38658 -4.04698 2.64907 3.13554 3.47016 3.51464 3.57618 3.66481 3.71257 4.15320 4.55893 4.77943 4.87732 5.07743 5.11043 5.20876 5.34076 5.57901 5.59259 5.67538 5.70458 5.83553 5.88697 6.01255 6.06495 6.14826 6.38722 6.52583 6.64990 6.89107 6.95791 7.06508 7.17207 7.32753 7.34897 7.79100 8.14977 8.38039 8.55236 8.87060 9.10272 9.61260 10.99629 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.021860 B = 0.007250 C = 0.005956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.573539 B = 3860.912914 C = 4699.786254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.019 3.981 3 H 0.041 0.959 4 C -0.581 4.581 5 H 0.061 0.939 6 C 0.023 3.977 7 N -0.910 5.910 8 Si 1.070 2.930 9 H -0.288 1.288 10 H -0.287 1.287 11 H -0.284 1.284 12 C 0.526 3.474 13 O -0.521 6.521 14 N -0.616 5.616 15 C 0.108 3.892 16 C -0.133 4.133 17 C 0.069 3.931 18 N -0.709 5.709 19 C 0.075 3.925 20 C 0.165 3.835 21 H 0.118 0.882 22 C 0.477 3.523 23 O -0.474 6.474 24 O -0.525 6.525 25 H 0.064 0.936 26 H 0.017 0.983 27 H 0.047 0.953 28 H 0.267 0.733 29 H 0.099 0.901 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.046 0.954 35 H 0.348 0.652 36 H 0.094 0.906 37 H 0.030 0.970 38 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.453 1.600 -16.325 16.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.002 4.002 3 H 0.058 0.942 4 C -0.619 4.619 5 H 0.079 0.921 6 C -0.180 4.180 7 N -0.546 5.546 8 Si 0.898 3.102 9 H -0.215 1.215 10 H -0.213 1.213 11 H -0.209 1.209 12 C 0.318 3.682 13 O -0.396 6.396 14 N -0.354 5.354 15 C -0.014 4.014 16 C -0.172 4.172 17 C -0.059 4.059 18 N -0.342 5.342 19 C -0.057 4.057 20 C 0.058 3.942 21 H 0.136 0.864 22 C 0.316 3.684 23 O -0.358 6.358 24 O -0.338 6.338 25 H 0.083 0.917 26 H 0.036 0.964 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.117 0.883 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.064 0.936 35 H 0.169 0.831 36 H 0.112 0.888 37 H 0.048 0.952 38 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 0.100 1.496 -14.416 14.494 hybrid contribution -0.392 -0.842 -1.314 1.609 sum -0.292 0.654 -15.730 15.746 Atomic orbital electron populations 1.21766 0.96866 1.01537 0.98658 1.19040 0.93438 0.96696 0.91029 0.94165 1.21794 1.37674 1.12150 0.90310 0.92080 1.25785 0.94327 0.96789 1.01132 1.70830 1.42824 1.07698 1.33241 0.83533 0.76583 0.75154 0.74909 1.21465 1.21319 1.20941 1.21675 0.74666 0.88064 0.83820 1.90583 1.52306 1.14987 1.81694 1.47984 1.69201 1.06695 1.11530 1.22031 1.01894 0.78196 0.99232 1.21889 0.98751 0.99063 0.97484 1.21423 0.96247 0.93566 0.94702 1.56744 1.48321 1.11997 1.17156 1.21424 0.95786 0.90497 0.97990 1.20378 0.97761 0.88448 0.87643 0.86447 1.22810 0.78095 0.86169 0.81315 1.90802 1.39028 1.83544 1.22390 1.84413 1.76085 1.22023 1.51233 0.91684 0.96350 0.93335 0.92174 0.88278 0.92025 0.90464 0.90222 0.91202 0.93570 0.83131 0.88827 0.95170 0.73649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 8.84 37.16 0.33 -2.69 16 2 C 0.02 0.48 1.64 -92.93 -0.15 0.33 16 3 H 0.04 1.00 4.93 -51.93 -0.26 0.75 16 4 C -0.58 -17.13 8.26 -34.44 -0.28 -17.41 16 5 H 0.06 1.96 7.33 -52.48 -0.38 1.58 16 6 C 0.02 0.67 5.19 -17.82 -0.09 0.58 16 7 N -0.91 -26.63 13.09 55.43 0.73 -25.91 16 8 Si 1.07 26.25 29.92 -169.99 -5.09 21.16 16 9 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 C 0.53 12.51 5.89 -10.99 -0.06 12.45 16 13 O -0.52 -14.02 11.92 -19.91 -0.24 -14.25 16 14 N -0.62 -11.44 2.10 -166.38 -0.35 -11.79 16 15 C 0.11 1.65 5.86 -3.20 -0.02 1.63 16 16 C -0.13 -1.50 5.78 -27.36 -0.16 -1.66 16 17 C 0.07 0.79 6.10 -5.08 -0.03 0.76 16 18 N -0.71 -7.79 5.98 -118.10 -0.71 -8.50 16 19 C 0.07 1.01 5.52 -5.74 -0.03 0.97 16 20 C 0.16 2.65 2.65 -69.01 -0.18 2.47 16 21 H 0.12 1.64 8.11 -51.93 -0.42 1.22 16 22 C 0.48 8.83 6.11 36.00 0.22 9.05 16 23 O -0.47 -11.16 14.37 -27.19 -0.39 -11.55 16 24 O -0.53 -7.52 12.30 -39.26 -0.48 -8.00 16 25 H 0.06 1.56 6.56 -51.93 -0.34 1.22 16 26 H 0.02 0.35 7.75 -51.93 -0.40 -0.05 16 27 H 0.05 1.18 8.12 -51.93 -0.42 0.76 16 28 H 0.27 7.59 6.08 -40.82 -0.25 7.34 16 29 H 0.10 1.64 5.33 -51.93 -0.28 1.36 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.08 0.84 7.98 -51.93 -0.41 0.42 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.05 0.66 6.95 -51.93 -0.36 0.30 16 35 H 0.35 3.03 8.85 -39.29 -0.35 2.68 16 36 H 0.09 1.10 7.46 -51.93 -0.39 0.72 16 37 H 0.03 0.49 8.12 -51.93 -0.42 0.07 16 38 H 0.41 4.39 9.10 45.56 0.41 4.80 16 LS Contribution 299.93 15.07 4.52 4.52 Total: -1.00 -36.21 299.93 -6.81 -43.02 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -4.33 Total: 4.82 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: -0.47 Total: 6.48 kcal Atomic # 7 Polarization: -45.86 SS G_CDS: -0.33 Total: -46.19 kcal Atomic # 8 Polarization: -32.70 SS G_CDS: -1.11 Total: -33.81 kcal Atomic # 14 Polarization: 26.25 SS G_CDS: -5.09 Total: 21.16 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -36.21 -6.81 -43.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592210460.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.262 kcal (2) G-P(sol) polarization free energy of solvation -36.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds