Wall clock time and date at job start Mon Mar 30 2020 02:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47071 * 2 1 4 4 C 1.50700 * 109.47103 * 119.99208 * 2 1 3 5 5 H 1.08008 * 119.99379 * 116.61975 * 4 2 1 6 6 C 1.37870 * 120.00498 * 296.62194 * 4 2 1 7 7 N 1.31511 * 119.99834 * 347.40365 * 6 4 2 8 8 Si 1.86801 * 120.00323 * 167.40519 * 6 4 2 9 9 H 1.48507 * 109.46935 * 89.99679 * 8 6 4 10 10 H 1.48508 * 109.46917 * 330.00380 * 8 6 4 11 11 H 1.48487 * 109.47506 * 210.00126 * 8 6 4 12 12 C 1.50698 * 109.47481 * 239.99821 * 2 1 3 13 13 O 1.21279 * 119.99908 * 278.38348 * 12 2 1 14 14 N 1.34771 * 119.99935 * 98.38192 * 12 2 1 15 15 C 1.47606 * 118.74967 * 5.05427 * 14 12 2 16 16 C 1.53457 * 111.49958 * 221.59632 * 15 14 12 17 17 C 1.51275 * 109.49085 * 40.30469 * 16 15 14 18 18 N 1.46193 * 109.10266 * 267.50269 * 17 16 15 19 19 C 1.41448 * 116.34210 * 87.02682 * 18 17 16 20 20 C 1.44893 * 118.74385 * 185.32938 * 14 12 2 21 21 H 1.08997 * 109.43169 * 210.31101 * 20 14 12 22 22 C 1.50698 * 109.43504 * 330.18015 * 20 14 12 23 23 O 1.20831 * 119.99827 * 329.91728 * 22 20 14 24 24 O 1.34232 * 120.00065 * 149.91347 * 22 20 14 25 25 H 1.08999 * 109.47335 * 308.23831 * 1 2 3 26 26 H 1.08998 * 109.47018 * 68.24115 * 1 2 3 27 27 H 1.08999 * 109.46917 * 188.24235 * 1 2 3 28 28 H 0.96998 * 120.00453 * 1.66870 * 7 6 4 29 29 H 1.09001 * 109.11278 * 342.17614 * 15 14 12 30 30 H 1.08995 * 109.11449 * 101.23692 * 15 14 12 31 31 H 1.09004 * 109.59009 * 280.25591 * 16 15 14 32 32 H 1.09001 * 109.41672 * 160.25147 * 16 15 14 33 33 H 1.08995 * 109.53136 * 147.61283 * 17 16 15 34 34 H 1.08997 * 109.58884 * 27.43108 * 17 16 15 35 35 H 1.00901 * 110.99850 * 215.22549 * 18 17 16 36 36 H 1.08999 * 109.38438 * 176.35731 * 19 18 17 37 37 H 1.09001 * 109.38907 * 56.67277 * 19 18 17 38 38 H 0.96698 * 116.99944 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 1.2306 5 1 2.6075 -1.6192 1.1324 6 6 1.7577 -0.1999 2.4815 7 7 1.2804 1.0194 2.6040 8 14 2.0636 -1.2403 4.0026 9 1 3.4491 -1.0135 4.4869 10 1 1.8861 -2.6754 3.6645 11 1 1.0991 -0.8591 5.0653 12 6 2.0324 -0.7104 -1.2304 13 8 2.0902 -1.9217 -1.2501 14 7 2.4175 0.0003 -2.3088 15 6 2.4430 1.4732 -2.2163 16 6 1.8915 2.1264 -3.4907 17 6 0.6879 1.3492 -3.9760 18 7 1.1259 0.3429 -4.9419 19 6 1.5350 -0.9020 -4.4094 20 6 2.7848 -0.7105 -3.5168 21 1 3.5348 -0.1369 -4.0612 22 6 3.3523 -2.0582 -3.1527 23 8 3.9373 -2.2045 -2.1057 24 8 3.2078 -3.0962 -3.9915 25 1 -0.3634 0.6360 0.8072 26 1 -0.3633 0.3810 -0.9544 27 1 -0.3633 -1.0171 0.1473 28 1 1.0988 1.5509 1.8132 29 1 1.8400 1.7878 -1.3645 30 1 3.4708 1.8036 -2.0660 31 1 2.6599 2.1254 -4.2638 32 1 1.5970 3.1531 -3.2732 33 1 -0.0172 2.0298 -4.4531 34 1 0.2053 0.8578 -3.1312 35 1 0.4382 0.2166 -5.6694 36 1 1.7744 -1.5835 -5.2257 37 1 0.7259 -1.3241 -3.8133 38 1 3.5884 -3.9408 -3.7145 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592210460.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:30 Heat of formation + Delta-G solvation = -129.022542 kcal Electronic energy + Delta-G solvation = -22748.948522 eV Core-core repulsion = 19398.079521 eV Total energy + Delta-G solvation = -3350.869001 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.30464 -40.24452 -38.83270 -37.03763 -36.27434 -35.53224 -33.91266 -32.31065 -29.44376 -27.31225 -27.11052 -24.86197 -24.02372 -22.58769 -21.84318 -20.10317 -19.35002 -18.70647 -18.42688 -17.62805 -17.24910 -16.58134 -16.40161 -16.12534 -15.89455 -15.71530 -15.25253 -14.77587 -14.59129 -14.36337 -13.86047 -13.65039 -13.34510 -13.21999 -13.10526 -13.06874 -12.64241 -12.49264 -12.31831 -12.11287 -12.00358 -11.97597 -11.80460 -11.43192 -10.88419 -10.38971 -10.24751 -9.75251 -9.40552 -8.69120 -6.35380 1.23544 1.46849 1.54719 1.67318 1.76854 1.98298 2.19407 2.51395 3.10021 3.21253 3.62298 3.78156 3.85714 4.01802 4.10384 4.22926 4.35561 4.41035 4.55755 4.58651 4.65384 4.73746 4.76034 4.79324 4.92423 5.05639 5.12977 5.23845 5.39010 5.59912 5.69024 5.87927 6.15720 6.17326 6.30535 6.54672 6.62946 7.02207 7.30225 7.40613 8.71437 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.021860 B = 0.007250 C = 0.005956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.573539 B = 3860.912914 C = 4699.786254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.013 3.987 3 H 0.045 0.955 4 C -0.605 4.605 5 H 0.022 0.978 6 C -0.012 4.012 7 N -0.918 5.918 8 Si 1.107 2.893 9 H -0.274 1.274 10 H -0.289 1.289 11 H -0.268 1.268 12 C 0.521 3.479 13 O -0.562 6.562 14 N -0.607 5.607 15 C 0.099 3.901 16 C -0.120 4.120 17 C 0.067 3.933 18 N -0.698 5.698 19 C 0.091 3.909 20 C 0.156 3.844 21 H 0.147 0.853 22 C 0.477 3.523 23 O -0.533 6.533 24 O -0.508 6.508 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.026 0.974 28 H 0.265 0.735 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.091 0.909 32 H 0.106 0.894 33 H 0.102 0.898 34 H 0.015 0.985 35 H 0.367 0.633 36 H 0.116 0.884 37 H -0.001 1.001 38 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.830 2.940 -18.435 18.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.008 4.008 3 H 0.063 0.937 4 C -0.643 4.643 5 H 0.041 0.959 6 C -0.213 4.213 7 N -0.554 5.554 8 Si 0.930 3.070 9 H -0.199 1.199 10 H -0.216 1.216 11 H -0.193 1.193 12 C 0.312 3.688 13 O -0.440 6.440 14 N -0.343 5.343 15 C -0.022 4.022 16 C -0.158 4.158 17 C -0.062 4.062 18 N -0.332 5.332 19 C -0.041 4.041 20 C 0.051 3.949 21 H 0.164 0.836 22 C 0.319 3.681 23 O -0.422 6.422 24 O -0.321 6.321 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.045 0.955 28 H 0.076 0.924 29 H 0.100 0.900 30 H 0.085 0.915 31 H 0.109 0.891 32 H 0.125 0.875 33 H 0.120 0.880 34 H 0.033 0.967 35 H 0.189 0.811 36 H 0.134 0.866 37 H 0.018 0.982 38 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -0.290 2.880 -16.610 16.860 hybrid contribution -0.246 -1.257 -0.769 1.494 sum -0.536 1.623 -17.379 17.463 Atomic orbital electron populations 1.21543 0.95513 1.00070 1.00057 1.19000 0.94525 0.96517 0.90791 0.93693 1.21921 1.38232 1.11349 0.92814 0.95920 1.26924 0.93616 0.97196 1.03531 1.70905 1.43383 1.07935 1.33207 0.83051 0.77593 0.73718 0.72656 1.19936 1.21558 1.19308 1.21349 0.75080 0.87557 0.84796 1.90550 1.54262 1.16532 1.82685 1.47898 1.67401 1.07956 1.11053 1.22294 1.02326 0.76298 1.01253 1.21866 0.98866 0.99804 0.95313 1.21500 0.96716 0.93915 0.94078 1.56727 1.48870 1.10572 1.17047 1.21243 0.93364 0.91964 0.97518 1.20800 0.99837 0.87388 0.86913 0.83564 1.23349 0.76622 0.87546 0.80572 1.90785 1.41717 1.84673 1.24982 1.84364 1.75497 1.22315 1.49892 0.92748 0.92934 0.95459 0.92448 0.90021 0.91499 0.89055 0.87525 0.87952 0.96701 0.81075 0.86598 0.98241 0.71815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.37 8.84 71.98 0.64 -4.74 16 2 C 0.01 0.66 1.64 -12.29 -0.02 0.64 16 3 H 0.05 2.29 4.93 -2.38 -0.01 2.27 16 4 C -0.60 -37.06 8.26 25.60 0.21 -36.85 16 5 H 0.02 1.53 7.33 -2.91 -0.02 1.51 16 6 C -0.01 -0.73 5.19 84.65 0.44 -0.29 16 7 N -0.92 -54.09 13.09 21.44 0.28 -53.81 16 8 Si 1.11 53.51 29.92 68.60 2.05 55.57 16 9 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 10 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 11 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 12 C 0.52 25.47 5.89 87.66 0.52 25.99 16 13 O -0.56 -31.50 11.92 21.33 0.25 -31.25 16 14 N -0.61 -22.30 2.10 -798.69 -1.68 -23.98 16 15 C 0.10 2.88 5.86 86.32 0.51 3.38 16 16 C -0.12 -2.27 5.78 30.18 0.17 -2.09 16 17 C 0.07 1.29 6.10 85.87 0.52 1.81 16 18 N -0.70 -12.71 5.98 -527.55 -3.15 -15.87 16 19 C 0.09 2.23 5.52 87.90 0.49 2.72 16 20 C 0.16 4.80 2.65 45.15 0.12 4.92 16 21 H 0.15 3.66 8.11 -2.39 -0.02 3.64 16 22 C 0.48 17.61 6.11 71.24 0.44 18.05 16 23 O -0.53 -25.96 14.37 30.01 0.43 -25.52 16 24 O -0.51 -13.96 12.30 -51.44 -0.63 -14.59 16 25 H 0.05 2.64 6.56 -2.39 -0.02 2.63 16 26 H 0.05 2.07 7.75 -2.39 -0.02 2.05 16 27 H 0.03 1.35 8.12 -2.39 -0.02 1.33 16 28 H 0.27 15.22 6.08 -92.71 -0.56 14.66 16 29 H 0.08 2.66 5.33 -2.39 -0.01 2.65 16 30 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.09 1.54 7.98 -2.39 -0.02 1.52 16 32 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.01 0.39 6.95 -2.39 -0.02 0.37 16 35 H 0.37 4.81 8.85 -89.69 -0.79 4.01 16 36 H 0.12 2.34 7.46 -2.39 -0.02 2.33 16 37 H 0.00 -0.02 8.12 -2.39 -0.02 -0.04 16 38 H 0.42 8.79 9.10 -74.06 -0.67 8.11 16 Total: -1.00 -82.22 299.93 1.42 -80.80 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -0.16 Total: 15.11 kcal Atomic # 6 Polarization: 9.52 SS G_CDS: 4.03 Total: 13.55 kcal Atomic # 7 Polarization: -89.11 SS G_CDS: -4.55 Total: -93.66 kcal Atomic # 8 Polarization: -71.42 SS G_CDS: 0.05 Total: -71.37 kcal Atomic # 14 Polarization: 53.51 SS G_CDS: 2.05 Total: 55.57 kcal Total: -82.22 1.42 -80.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592210460.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.227 kcal (2) G-P(sol) polarization free energy of solvation -82.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds