Wall clock time and date at job start Mon Mar 30 2020 02:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47246 * 2 1 4 4 C 1.50703 * 109.46875 * 119.99887 * 2 1 3 5 5 H 1.08000 * 119.99773 * 119.99883 * 4 2 1 6 6 C 1.37874 * 120.00112 * 300.00438 * 4 2 1 7 7 N 1.31516 * 119.99991 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00130 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46912 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47181 * 119.99523 * 8 6 4 11 11 H 1.48504 * 109.46916 * 239.99675 * 8 6 4 12 12 C 1.50702 * 109.47180 * 239.99976 * 2 1 3 13 13 O 1.21281 * 119.99713 * 240.00652 * 12 2 1 14 14 N 1.34767 * 120.00269 * 60.00239 * 12 2 1 15 15 C 1.47623 * 118.74646 * 6.14028 * 14 12 2 16 16 C 1.53851 * 111.36976 * 138.28100 * 15 14 12 17 17 C 1.51274 * 109.57206 * 320.04686 * 16 15 14 18 18 N 1.46202 * 109.16061 * 92.34070 * 17 16 15 19 19 C 1.41439 * 116.34326 * 272.92563 * 18 17 16 20 20 C 1.44884 * 118.75084 * 186.11926 * 14 12 2 21 21 H 1.09003 * 109.40122 * 149.67545 * 20 14 12 22 22 C 1.50703 * 109.43300 * 29.78725 * 20 14 12 23 23 O 1.20827 * 119.99915 * 220.01705 * 22 20 14 24 24 O 1.34227 * 120.00017 * 40.01701 * 22 20 14 25 25 H 1.08999 * 109.47541 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47391 * 300.00279 * 1 2 3 27 27 H 1.09009 * 109.46511 * 59.99906 * 1 2 3 28 28 H 0.96996 * 120.00279 * 180.02562 * 7 6 4 29 29 H 1.09002 * 109.11241 * 258.78625 * 15 14 12 30 30 H 1.08996 * 109.10995 * 17.84437 * 15 14 12 31 31 H 1.08995 * 109.56240 * 199.96178 * 16 15 14 32 32 H 1.09002 * 109.38654 * 80.02060 * 16 15 14 33 33 H 1.08997 * 109.53445 * 332.41164 * 17 16 15 34 34 H 1.09002 * 109.53288 * 212.26424 * 17 16 15 35 35 H 1.00903 * 110.99891 * 144.72201 * 18 17 16 36 36 H 1.09001 * 109.38578 * 183.64197 * 19 18 17 37 37 H 1.09001 * 109.38963 * 303.32373 * 19 18 17 38 38 H 0.96700 * 117.00027 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6991 -0.2394 2.4827 7 7 0.9434 0.8302 2.6034 8 14 2.3211 -1.1204 4.0080 9 1 3.1453 -2.2877 3.6038 10 1 3.1464 -0.1875 4.8166 11 1 1.1657 -1.5867 4.8161 12 6 2.0324 -0.7104 -1.2305 13 8 2.7295 -1.6966 -1.1191 14 7 1.7069 -0.2500 -2.4545 15 6 0.9737 1.0268 -2.5610 16 6 1.5195 1.8927 -3.7096 17 6 3.0285 1.7933 -3.7461 18 7 3.4167 0.7187 -4.6583 19 6 3.4899 -0.5801 -4.1030 20 6 2.0903 -1.0268 -3.6159 21 1 1.3623 -0.8710 -4.4121 22 6 2.1292 -2.4884 -3.2510 23 8 3.0097 -3.1952 -3.6811 24 8 1.1857 -3.0051 -2.4482 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 0.7093 1.1618 3.4843 29 1 -0.0811 0.8187 -2.7411 30 1 1.0733 1.5747 -1.6240 31 1 1.2279 2.9313 -3.5540 32 1 1.1096 1.5390 -4.6556 33 1 3.4038 1.5760 -2.7462 34 1 3.4475 2.7370 -4.0955 35 1 4.2672 0.9506 -5.1491 36 1 3.8491 -1.2775 -4.8598 37 1 4.1816 -0.5751 -3.2606 38 1 1.2526 -3.9474 -2.2419 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592210461.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:34 Heat of formation + Delta-G solvation = -109.505176 kcal Electronic energy + Delta-G solvation = -22718.236067 eV Core-core repulsion = 19368.213403 eV Total energy + Delta-G solvation = -3350.022664 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.73468 -38.82384 -37.40831 -35.58104 -34.44109 -33.80165 -32.55463 -30.56668 -27.83352 -26.21616 -25.14829 -23.30213 -22.55482 -20.86801 -20.57717 -18.67582 -17.46351 -16.96273 -16.48799 -16.32007 -15.61804 -15.26550 -14.84101 -14.69210 -14.54004 -14.36236 -13.44974 -13.28199 -12.93122 -12.73474 -12.39712 -12.29251 -11.72226 -11.47880 -11.39872 -11.03485 -11.00757 -10.88677 -10.82374 -10.70228 -10.40166 -10.28628 -10.09865 -9.99372 -8.98381 -8.68899 -8.45410 -8.35224 -8.22546 -6.06406 -4.09127 2.58600 3.29890 3.33614 3.37849 3.45950 3.54326 3.57045 4.28426 4.44027 4.86704 4.91245 5.13779 5.18669 5.26370 5.29448 5.57846 5.66564 5.76337 5.80176 5.91069 5.99155 6.09283 6.12463 6.22956 6.62392 6.81526 6.86445 6.96674 7.03891 7.22945 7.38127 7.42364 7.69588 7.87718 8.04278 8.30139 8.36838 8.98777 9.07076 9.56227 11.01199 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.021323 B = 0.007098 C = 0.006105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.841051 B = 3943.549543 C = 4585.516362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.036 3.964 3 H 0.051 0.949 4 C -0.499 4.499 5 H 0.073 0.927 6 C 0.059 3.941 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.524 3.476 13 O -0.528 6.528 14 N -0.617 5.617 15 C 0.111 3.889 16 C -0.135 4.135 17 C 0.069 3.931 18 N -0.709 5.709 19 C 0.080 3.920 20 C 0.160 3.840 21 H 0.115 0.885 22 C 0.504 3.496 23 O -0.532 6.532 24 O -0.502 6.502 25 H 0.032 0.968 26 H 0.092 0.908 27 H 0.022 0.978 28 H 0.260 0.740 29 H 0.065 0.935 30 H 0.098 0.902 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.046 0.954 34 H 0.069 0.931 35 H 0.350 0.650 36 H 0.092 0.908 37 H 0.035 0.965 38 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.901 3.047 -13.456 13.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.016 3.984 3 H 0.068 0.932 4 C -0.538 4.538 5 H 0.091 0.909 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.210 1.210 12 C 0.316 3.684 13 O -0.404 6.404 14 N -0.355 5.355 15 C -0.011 4.011 16 C -0.174 4.174 17 C -0.060 4.060 18 N -0.342 5.342 19 C -0.052 4.052 20 C 0.053 3.947 21 H 0.132 0.868 22 C 0.347 3.653 23 O -0.422 6.422 24 O -0.312 6.312 25 H 0.051 0.949 26 H 0.110 0.890 27 H 0.040 0.960 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.116 0.884 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.064 0.936 34 H 0.088 0.912 35 H 0.170 0.830 36 H 0.110 0.890 37 H 0.053 0.947 38 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -1.015 2.750 -13.589 13.902 hybrid contribution 1.031 -0.903 1.416 1.971 sum 0.016 1.847 -12.173 12.312 Atomic orbital electron populations 1.21906 0.96161 1.00253 1.01319 1.18827 0.94400 0.96386 0.88833 0.93168 1.21167 1.30857 1.12775 0.88964 0.90864 1.24928 0.95101 0.95074 0.99065 1.69871 1.37143 1.23074 1.23452 0.86421 0.78633 0.79805 0.82540 1.19633 1.21065 1.21008 1.22198 0.77461 0.84226 0.84505 1.90484 1.37679 1.27571 1.84696 1.48186 1.59404 1.23167 1.04732 1.22172 0.94910 0.83605 1.00423 1.21985 0.95967 1.00069 0.99382 1.21413 0.96058 0.93017 0.95478 1.56681 1.41034 1.01957 1.34560 1.21253 0.94353 0.90296 0.99269 1.20660 0.98726 0.84861 0.90456 0.86763 1.22783 0.78156 0.90417 0.73969 1.90638 1.35743 1.61835 1.53952 1.84530 1.52003 1.32078 1.62600 0.94871 0.88960 0.95959 0.93005 0.91711 0.88414 0.90242 0.90576 0.93565 0.91228 0.82969 0.89008 0.94684 0.73753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.58 37.16 0.32 -2.78 16 2 C 0.04 0.88 1.80 -92.92 -0.17 0.71 16 3 H 0.05 1.25 7.16 -51.93 -0.37 0.88 16 4 C -0.50 -13.97 8.37 -34.44 -0.29 -14.25 16 5 H 0.07 2.19 6.75 -52.49 -0.35 1.84 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 7 N -0.90 -24.66 11.32 55.43 0.63 -24.03 16 8 Si 0.90 21.72 29.54 -169.99 -5.02 16.69 16 9 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 C 0.52 11.69 6.04 -10.99 -0.07 11.63 16 13 O -0.53 -13.39 12.23 -17.70 -0.22 -13.61 16 14 N -0.62 -10.78 2.10 -166.12 -0.35 -11.13 16 15 C 0.11 1.58 4.46 -2.98 -0.01 1.57 16 16 C -0.14 -1.49 5.80 -27.16 -0.16 -1.65 16 17 C 0.07 0.81 6.10 -5.07 -0.03 0.78 16 18 N -0.71 -8.35 5.98 -118.09 -0.71 -9.05 16 19 C 0.08 1.19 5.40 -5.74 -0.03 1.16 16 20 C 0.16 2.57 2.60 -69.01 -0.18 2.39 16 21 H 0.11 1.57 8.11 -51.93 -0.42 1.15 16 22 C 0.50 9.36 5.54 36.01 0.20 9.55 16 23 O -0.53 -10.79 16.59 -19.00 -0.32 -11.11 16 24 O -0.50 -9.05 11.32 -46.86 -0.53 -9.58 16 25 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.09 2.28 6.07 -51.93 -0.32 1.96 16 27 H 0.02 0.41 4.96 -51.92 -0.26 0.15 16 28 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 29 H 0.06 0.85 7.36 -51.93 -0.38 0.47 16 30 H 0.10 1.53 5.34 -51.93 -0.28 1.25 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.81 7.98 -51.93 -0.41 0.39 16 33 H 0.05 0.68 7.32 -51.93 -0.38 0.30 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.35 3.37 8.85 -39.29 -0.35 3.02 16 36 H 0.09 1.31 7.54 -51.93 -0.39 0.91 16 37 H 0.03 0.63 8.12 -51.93 -0.42 0.21 16 38 H 0.40 5.78 9.10 45.56 0.41 6.19 16 LS Contribution 297.80 15.07 4.49 4.49 Total: -1.00 -32.76 297.80 -6.86 -39.61 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -4.32 Total: 7.09 kcal Atomic # 6 Polarization: 11.14 SS G_CDS: -0.51 Total: 10.62 kcal Atomic # 7 Polarization: -43.79 SS G_CDS: -0.43 Total: -44.22 kcal Atomic # 8 Polarization: -33.23 SS G_CDS: -1.06 Total: -34.29 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -32.76 -6.86 -39.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592210461.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.894 kcal (2) G-P(sol) polarization free energy of solvation -32.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds