Wall clock time and date at job start Mon Mar 30 2020 02:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47246 * 2 1 4 4 C 1.50703 * 109.46875 * 119.99887 * 2 1 3 5 5 H 1.08000 * 119.99773 * 119.99883 * 4 2 1 6 6 C 1.37874 * 120.00112 * 300.00438 * 4 2 1 7 7 N 1.31516 * 119.99991 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00130 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46912 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47181 * 119.99523 * 8 6 4 11 11 H 1.48504 * 109.46916 * 239.99675 * 8 6 4 12 12 C 1.50702 * 109.47180 * 239.99976 * 2 1 3 13 13 O 1.21281 * 119.99713 * 240.00652 * 12 2 1 14 14 N 1.34767 * 120.00269 * 60.00239 * 12 2 1 15 15 C 1.47623 * 118.74646 * 6.14028 * 14 12 2 16 16 C 1.53851 * 111.36976 * 138.28100 * 15 14 12 17 17 C 1.51274 * 109.57206 * 320.04686 * 16 15 14 18 18 N 1.46202 * 109.16061 * 92.34070 * 17 16 15 19 19 C 1.41439 * 116.34326 * 272.92563 * 18 17 16 20 20 C 1.44884 * 118.75084 * 186.11926 * 14 12 2 21 21 H 1.09003 * 109.40122 * 149.67545 * 20 14 12 22 22 C 1.50703 * 109.43300 * 29.78725 * 20 14 12 23 23 O 1.20827 * 119.99915 * 220.01705 * 22 20 14 24 24 O 1.34227 * 120.00017 * 40.01701 * 22 20 14 25 25 H 1.08999 * 109.47541 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47391 * 300.00279 * 1 2 3 27 27 H 1.09009 * 109.46511 * 59.99906 * 1 2 3 28 28 H 0.96996 * 120.00279 * 180.02562 * 7 6 4 29 29 H 1.09002 * 109.11241 * 258.78625 * 15 14 12 30 30 H 1.08996 * 109.10995 * 17.84437 * 15 14 12 31 31 H 1.08995 * 109.56240 * 199.96178 * 16 15 14 32 32 H 1.09002 * 109.38654 * 80.02060 * 16 15 14 33 33 H 1.08997 * 109.53445 * 332.41164 * 17 16 15 34 34 H 1.09002 * 109.53288 * 212.26424 * 17 16 15 35 35 H 1.00903 * 110.99891 * 144.72201 * 18 17 16 36 36 H 1.09001 * 109.38578 * 183.64197 * 19 18 17 37 37 H 1.09001 * 109.38963 * 303.32373 * 19 18 17 38 38 H 0.96700 * 117.00027 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6991 -0.2394 2.4827 7 7 0.9434 0.8302 2.6034 8 14 2.3211 -1.1204 4.0080 9 1 3.1453 -2.2877 3.6038 10 1 3.1464 -0.1875 4.8166 11 1 1.1657 -1.5867 4.8161 12 6 2.0324 -0.7104 -1.2305 13 8 2.7295 -1.6966 -1.1191 14 7 1.7069 -0.2500 -2.4545 15 6 0.9737 1.0268 -2.5610 16 6 1.5195 1.8927 -3.7096 17 6 3.0285 1.7933 -3.7461 18 7 3.4167 0.7187 -4.6583 19 6 3.4899 -0.5801 -4.1030 20 6 2.0903 -1.0268 -3.6159 21 1 1.3623 -0.8710 -4.4121 22 6 2.1292 -2.4884 -3.2510 23 8 3.0097 -3.1952 -3.6811 24 8 1.1857 -3.0051 -2.4482 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 0.7093 1.1618 3.4843 29 1 -0.0811 0.8187 -2.7411 30 1 1.0733 1.5747 -1.6240 31 1 1.2279 2.9313 -3.5540 32 1 1.1096 1.5390 -4.6556 33 1 3.4038 1.5760 -2.7462 34 1 3.4475 2.7370 -4.0955 35 1 4.2672 0.9506 -5.1491 36 1 3.8491 -1.2775 -4.8598 37 1 4.1816 -0.5751 -3.2606 38 1 1.2526 -3.9474 -2.2419 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592210461.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:33 Heat of formation + Delta-G solvation = -133.807359 kcal Electronic energy + Delta-G solvation = -22719.289889 eV Core-core repulsion = 19368.213403 eV Total energy + Delta-G solvation = -3351.076486 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.19207 -40.33181 -38.76451 -37.04784 -36.08072 -35.46253 -33.80645 -32.42501 -29.20099 -27.51981 -27.03884 -24.84379 -24.03062 -22.39411 -21.66174 -20.15990 -18.96238 -18.38179 -18.33278 -17.78432 -17.03183 -16.75883 -16.47831 -16.27338 -15.81584 -15.72380 -15.15329 -14.70937 -14.33942 -14.18710 -13.94989 -13.65688 -13.29393 -12.99207 -12.93181 -12.75311 -12.56863 -12.45735 -12.32278 -12.19594 -12.06412 -11.88186 -11.69279 -11.52367 -11.01079 -10.61823 -10.29196 -9.71044 -9.43582 -8.16735 -6.26013 1.14226 1.36158 1.38808 1.51388 1.83992 1.97140 2.20212 2.43331 3.12796 3.26922 3.59914 3.87503 3.92835 4.09883 4.22679 4.29478 4.35870 4.60384 4.72518 4.73658 4.76566 4.81138 4.99033 5.01055 5.04483 5.19574 5.27051 5.49325 5.58012 5.67550 5.74276 5.91612 6.14441 6.21362 6.45386 6.50673 6.81010 6.97947 7.34692 7.43835 8.89113 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.021323 B = 0.007098 C = 0.006105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.841051 B = 3943.549543 C = 4585.516362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.036 3.964 3 H 0.040 0.960 4 C -0.527 4.527 5 H 0.043 0.957 6 C 0.023 3.977 7 N -0.907 5.907 8 Si 0.950 3.050 9 H -0.284 1.284 10 H -0.274 1.274 11 H -0.273 1.273 12 C 0.523 3.477 13 O -0.570 6.570 14 N -0.605 5.605 15 C 0.100 3.900 16 C -0.124 4.124 17 C 0.065 3.935 18 N -0.695 5.695 19 C 0.093 3.907 20 C 0.157 3.843 21 H 0.150 0.850 22 C 0.498 3.502 23 O -0.556 6.556 24 O -0.510 6.510 25 H 0.018 0.982 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.265 0.735 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.108 0.892 32 H 0.092 0.908 33 H 0.010 0.990 34 H 0.100 0.900 35 H 0.365 0.635 36 H 0.099 0.901 37 H -0.005 1.005 38 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.802 4.491 -15.018 15.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.015 3.985 3 H 0.058 0.942 4 C -0.565 4.565 5 H 0.062 0.938 6 C -0.176 4.176 7 N -0.546 5.546 8 Si 0.777 3.223 9 H -0.209 1.209 10 H -0.200 1.200 11 H -0.198 1.198 12 C 0.315 3.685 13 O -0.449 6.449 14 N -0.340 5.340 15 C -0.021 4.021 16 C -0.162 4.162 17 C -0.063 4.063 18 N -0.329 5.329 19 C -0.039 4.039 20 C 0.051 3.949 21 H 0.168 0.832 22 C 0.343 3.657 23 O -0.447 6.447 24 O -0.321 6.321 25 H 0.037 0.963 26 H 0.088 0.912 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.126 0.874 32 H 0.110 0.890 33 H 0.028 0.972 34 H 0.119 0.881 35 H 0.187 0.813 36 H 0.117 0.883 37 H 0.013 0.987 38 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -1.944 4.238 -15.184 15.884 hybrid contribution 1.311 -1.328 1.874 2.644 sum -0.634 2.909 -13.310 13.639 Atomic orbital electron populations 1.21707 0.94710 0.99458 1.02150 1.18701 0.95473 0.95446 0.88901 0.94203 1.21277 1.31431 1.12576 0.91223 0.93839 1.25512 0.95228 0.95756 1.01140 1.69933 1.37102 1.23382 1.24225 0.85623 0.78371 0.78563 0.79780 1.20907 1.19965 1.19818 1.21767 0.77372 0.83675 0.85674 1.90463 1.39471 1.29270 1.85720 1.48045 1.58378 1.23953 1.03620 1.22468 0.95864 0.82339 1.01401 1.21966 0.94980 1.00911 0.98355 1.21520 0.96914 0.94152 0.93720 1.56719 1.41810 1.00645 1.33764 1.21062 0.92641 0.92231 0.98008 1.20970 1.00450 0.83089 0.90386 0.83239 1.23313 0.77675 0.91376 0.73370 1.90616 1.36499 1.62704 1.54904 1.84501 1.51871 1.33336 1.62437 0.96277 0.91165 0.91982 0.92562 0.89711 0.90049 0.87413 0.88971 0.97154 0.88133 0.81283 0.88259 0.98656 0.72372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.46 8.58 71.98 0.62 -4.84 16 2 C 0.04 1.76 1.80 -12.28 -0.02 1.74 16 3 H 0.04 2.04 7.16 -2.39 -0.02 2.03 16 4 C -0.53 -30.42 8.37 25.60 0.21 -30.21 16 5 H 0.04 2.73 6.75 -2.91 -0.02 2.71 16 6 C 0.02 1.28 5.30 84.65 0.45 1.73 16 7 N -0.91 -50.06 11.32 21.45 0.24 -49.82 16 8 Si 0.95 45.04 29.54 68.60 2.03 47.07 16 9 H -0.28 -13.90 7.11 99.48 0.71 -13.20 16 10 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 12 C 0.52 23.78 6.04 87.66 0.53 24.31 16 13 O -0.57 -29.96 12.23 19.20 0.23 -29.73 16 14 N -0.60 -20.51 2.10 -797.87 -1.67 -22.18 16 15 C 0.10 2.58 4.46 86.45 0.39 2.97 16 16 C -0.12 -2.23 5.80 30.32 0.18 -2.06 16 17 C 0.07 1.36 6.10 85.87 0.52 1.88 16 18 N -0.70 -14.47 5.98 -527.52 -3.15 -17.63 16 19 C 0.09 2.65 5.40 87.91 0.47 3.13 16 20 C 0.16 4.82 2.60 45.15 0.12 4.94 16 21 H 0.15 3.58 8.11 -2.39 -0.02 3.56 16 22 C 0.50 18.42 5.54 71.24 0.39 18.81 16 23 O -0.56 -22.70 16.59 22.20 0.37 -22.34 16 24 O -0.51 -18.43 11.32 -44.11 -0.50 -18.93 16 25 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.07 3.46 6.07 -2.39 -0.01 3.44 16 27 H 0.06 2.20 4.96 -2.38 -0.01 2.19 16 28 H 0.27 13.82 8.31 -92.71 -0.77 13.05 16 29 H 0.08 1.90 7.36 -2.39 -0.02 1.88 16 30 H 0.08 2.42 5.34 -2.39 -0.01 2.40 16 31 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.09 1.46 7.98 -2.39 -0.02 1.44 16 33 H 0.01 0.29 7.32 -2.39 -0.02 0.27 16 34 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.36 5.96 8.85 -89.69 -0.79 5.17 16 36 H 0.10 2.70 7.54 -2.39 -0.02 2.68 16 37 H 0.00 -0.17 8.12 -2.39 -0.02 -0.19 16 38 H 0.42 12.14 9.10 -74.06 -0.67 11.47 16 Total: -1.00 -72.98 297.80 1.04 -71.94 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: -0.36 Total: 19.21 kcal Atomic # 6 Polarization: 18.55 SS G_CDS: 3.86 Total: 22.41 kcal Atomic # 7 Polarization: -85.04 SS G_CDS: -4.58 Total: -89.62 kcal Atomic # 8 Polarization: -71.10 SS G_CDS: 0.10 Total: -71.00 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -72.98 1.04 -71.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592210461.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.872 kcal (2) G-P(sol) polarization free energy of solvation -72.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds