Wall clock time and date at job start Mon Mar 30 2020 02:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09007 * 109.46736 * 2 1 4 4 C 1.50700 * 109.47274 * 240.00570 * 2 1 3 5 5 H 1.07996 * 119.99945 * 245.40953 * 4 2 1 6 6 C 1.37880 * 119.99978 * 65.39895 * 4 2 1 7 7 N 1.31510 * 120.00074 * 5.76482 * 6 4 2 8 8 Si 1.86796 * 119.99844 * 185.76137 * 6 4 2 9 9 H 1.48504 * 109.46899 * 84.99900 * 8 6 4 10 10 H 1.48506 * 109.47071 * 325.00319 * 8 6 4 11 11 H 1.48497 * 109.47372 * 205.00117 * 8 6 4 12 12 C 1.50696 * 109.47180 * 119.99849 * 2 1 3 13 13 O 1.21285 * 119.99500 * 100.60036 * 12 2 1 14 14 N 1.34770 * 120.00409 * 280.60687 * 12 2 1 15 15 C 1.50225 * 120.55308 * 5.96265 * 14 12 2 16 16 C 1.46651 * 106.98700 * 248.52651 * 15 14 12 17 17 C 1.52475 * 114.10789 * 301.85803 * 16 15 14 18 18 N 1.43914 * 105.41505 * 90.35502 * 17 16 15 19 19 C 1.48821 * 112.04861 * 261.29394 * 18 17 16 20 20 C 1.43669 * 120.54982 * 185.68995 * 14 12 2 21 21 H 1.09004 * 108.13675 * 212.58931 * 20 14 12 22 22 C 1.50698 * 108.14144 * 329.11370 * 20 14 12 23 23 O 1.20826 * 119.99814 * 333.42371 * 22 20 14 24 24 O 1.34228 * 119.99964 * 153.42876 * 22 20 14 25 25 H 1.09002 * 109.46900 * 304.21699 * 1 2 3 26 26 H 1.09001 * 109.47209 * 64.21608 * 1 2 3 27 27 H 1.08999 * 109.46983 * 184.21616 * 1 2 3 28 28 H 0.96995 * 120.00059 * 179.97438 * 7 6 4 29 29 H 1.09002 * 109.95472 * 7.89429 * 15 14 12 30 30 H 1.09000 * 109.95508 * 129.07061 * 15 14 12 31 31 H 1.08999 * 108.55659 * 63.05536 * 16 15 14 32 32 H 1.08997 * 108.55761 * 180.81654 * 16 15 14 33 33 H 1.09000 * 110.25090 * 209.32762 * 17 16 15 34 34 H 1.09003 * 110.25421 * 331.38289 * 17 16 15 35 35 H 1.00909 * 110.99765 * 136.56955 * 18 17 16 36 36 H 1.08996 * 109.23453 * 159.31337 * 19 18 17 37 37 H 1.09004 * 109.23178 * 278.68781 * 19 18 17 38 38 H 0.96702 * 116.99939 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.5794 -1.6365 -1.1339 6 6 1.7936 -0.1778 -2.4797 7 7 1.2282 1.0042 -2.5936 8 14 2.2731 -1.1351 -4.0103 9 1 1.1852 -2.0825 -4.3627 10 1 3.5236 -1.8924 -3.7490 11 1 2.4918 -0.1916 -5.1361 12 6 2.0324 -0.7104 1.2304 13 8 2.4167 -1.8581 1.1535 14 7 2.0545 -0.0704 2.4163 15 6 1.4594 1.3020 2.5546 16 6 2.5716 2.2303 2.7829 17 6 3.4146 1.9023 4.0103 18 7 4.4564 1.0297 3.5368 19 6 4.1485 -0.4023 3.8002 20 6 2.6424 -0.6917 3.5706 21 1 2.0933 -0.3591 4.4516 22 6 2.4573 -2.1821 3.4466 23 8 1.5334 -2.6249 2.8060 24 8 3.3186 -3.0177 4.0479 25 1 -0.3633 0.5779 0.8498 26 1 -0.3634 0.4470 -0.9254 27 1 -0.3633 -1.0249 0.0756 28 1 1.0605 1.3789 -3.4723 29 1 0.9312 1.5723 1.6402 30 1 0.7732 1.3264 3.4011 31 1 3.2179 2.2197 1.9053 32 1 2.1660 3.2350 2.9017 33 1 3.8453 2.8130 4.4265 34 1 2.8080 1.3936 4.7597 35 1 5.3495 1.2859 3.9306 36 1 4.7406 -1.0260 3.1305 37 1 4.4050 -0.6408 4.8324 38 1 3.1592 -3.9653 3.9396 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592210462.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:37 Heat of formation + Delta-G solvation = -91.467272 kcal Electronic energy + Delta-G solvation = -22677.660674 eV Core-core repulsion = 19328.420191 eV Total energy + Delta-G solvation = -3349.240482 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.72997 -38.67326 -37.36515 -35.54359 -34.14113 -33.62502 -32.59470 -30.45806 -27.96454 -25.99819 -25.07305 -23.27315 -22.55729 -21.16808 -20.33419 -18.51291 -17.40795 -16.87502 -16.50103 -16.15762 -15.64149 -15.08592 -15.02724 -14.50096 -14.37031 -13.93963 -13.55781 -13.31945 -12.83868 -12.79407 -12.46855 -12.22323 -11.76953 -11.49015 -11.23888 -10.99298 -10.89310 -10.82193 -10.67731 -10.60582 -10.43170 -10.20694 -10.03300 -9.78513 -8.93880 -8.42281 -8.32509 -8.17916 -8.10238 -5.99081 -3.98020 2.64526 3.19520 3.38993 3.43535 3.48903 3.60064 3.90315 4.29980 4.52607 4.83208 4.87688 4.99040 5.12946 5.32505 5.36915 5.46954 5.56192 5.64385 5.85013 5.91051 6.05156 6.13799 6.22033 6.57288 6.66189 6.92090 6.93051 7.00501 7.03509 7.11579 7.42472 7.49059 7.76743 7.99039 8.06370 8.38580 8.43577 9.08964 9.33862 9.65478 11.11106 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.020461 B = 0.007138 C = 0.006187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.097670 B = 3921.673410 C = 4524.407974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.037 3.963 3 H 0.054 0.946 4 C -0.497 4.497 5 H 0.069 0.931 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.288 1.288 12 C 0.528 3.472 13 O -0.525 6.525 14 N -0.610 5.610 15 C 0.119 3.881 16 C -0.144 4.144 17 C 0.061 3.939 18 N -0.684 5.684 19 C 0.057 3.943 20 C 0.166 3.834 21 H 0.099 0.901 22 C 0.470 3.530 23 O -0.470 6.470 24 O -0.527 6.527 25 H 0.017 0.983 26 H 0.079 0.921 27 H 0.034 0.966 28 H 0.260 0.740 29 H 0.108 0.892 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.042 0.958 35 H 0.340 0.660 36 H 0.084 0.916 37 H 0.051 0.949 38 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.130 2.939 16.266 16.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.016 3.984 3 H 0.072 0.928 4 C -0.535 4.535 5 H 0.087 0.913 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.199 1.199 11 H -0.214 1.214 12 C 0.320 3.680 13 O -0.399 6.399 14 N -0.348 5.348 15 C -0.001 4.001 16 C -0.182 4.182 17 C -0.069 4.069 18 N -0.316 5.316 19 C -0.073 4.073 20 C 0.058 3.942 21 H 0.116 0.884 22 C 0.308 3.692 23 O -0.353 6.353 24 O -0.339 6.339 25 H 0.036 0.964 26 H 0.097 0.903 27 H 0.053 0.947 28 H 0.070 0.930 29 H 0.126 0.874 30 H 0.081 0.919 31 H 0.107 0.893 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.060 0.940 35 H 0.158 0.842 36 H 0.102 0.898 37 H 0.069 0.931 38 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 2.807 2.699 15.264 15.753 hybrid contribution 0.289 -1.072 0.063 1.112 sum 3.097 1.627 15.328 15.722 Atomic orbital electron populations 1.21728 0.96809 0.99419 1.00624 1.18804 0.93677 0.96979 0.88912 0.92773 1.21079 1.34873 1.08339 0.89229 0.91262 1.24916 0.95365 0.94825 0.98973 1.69924 1.44053 1.15822 1.23724 0.86519 0.79078 0.79717 0.82199 1.20611 1.19913 1.21372 1.21917 0.75959 0.86293 0.83788 1.90577 1.47053 1.17762 1.84496 1.48280 1.60185 1.18515 1.07839 1.21270 0.95096 0.80273 1.03491 1.20996 0.98319 0.98616 1.00311 1.21446 0.93835 0.95945 0.95705 1.60086 1.05136 1.02036 1.64300 1.23000 0.94647 0.89754 0.99941 1.20077 0.95491 0.86609 0.92062 0.88366 1.23076 0.80310 0.89812 0.75983 1.90781 1.32308 1.77918 1.34271 1.84439 1.55676 1.22493 1.71290 0.96362 0.90267 0.94716 0.93020 0.87382 0.91936 0.89340 0.91567 0.91380 0.93955 0.84177 0.89781 0.93059 0.73716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.08 8.76 37.16 0.33 -2.75 16 2 C 0.04 0.96 1.64 -92.92 -0.15 0.81 16 3 H 0.05 1.42 7.15 -51.93 -0.37 1.05 16 4 C -0.50 -14.58 8.30 -34.44 -0.29 -14.87 16 5 H 0.07 2.17 6.89 -52.49 -0.36 1.81 16 6 C 0.06 1.71 5.23 -17.82 -0.09 1.62 16 7 N -0.90 -25.63 11.97 55.43 0.66 -24.96 16 8 Si 0.90 22.46 29.54 -169.99 -5.02 17.44 16 9 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 10 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 C 0.53 12.73 6.12 -10.99 -0.07 12.66 16 13 O -0.52 -14.30 11.47 -20.04 -0.23 -14.53 16 14 N -0.61 -11.34 2.57 -168.64 -0.43 -11.78 16 15 C 0.12 1.77 5.47 -4.99 -0.03 1.75 16 16 C -0.14 -1.84 5.32 -30.03 -0.16 -2.00 16 17 C 0.06 0.65 6.25 -5.68 -0.04 0.61 16 18 N -0.68 -8.48 6.20 -113.58 -0.70 -9.18 16 19 C 0.06 0.77 5.80 -1.66 -0.01 0.76 16 20 C 0.17 2.61 2.20 -69.49 -0.15 2.46 16 21 H 0.10 1.26 6.89 -51.93 -0.36 0.90 16 22 C 0.47 8.49 6.23 36.00 0.22 8.71 16 23 O -0.47 -10.65 14.05 -27.23 -0.38 -11.03 16 24 O -0.53 -7.42 12.56 -39.25 -0.49 -7.91 16 25 H 0.02 0.36 6.30 -51.93 -0.33 0.03 16 26 H 0.08 2.04 6.66 -51.93 -0.35 1.70 16 27 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.11 1.79 4.52 -51.93 -0.23 1.55 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.09 1.42 7.86 -51.93 -0.41 1.01 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.04 0.42 6.13 -51.93 -0.32 0.10 16 35 H 0.34 3.35 8.89 -39.29 -0.35 3.00 16 36 H 0.08 1.35 7.94 -51.93 -0.41 0.93 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.40 4.28 9.10 45.56 0.41 4.69 16 LS Contribution 298.36 15.07 4.50 4.50 Total: -1.00 -35.66 298.36 -6.86 -42.52 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -4.32 Total: 5.18 kcal Atomic # 6 Polarization: 10.19 SS G_CDS: -0.43 Total: 9.75 kcal Atomic # 7 Polarization: -45.45 SS G_CDS: -0.47 Total: -45.92 kcal Atomic # 8 Polarization: -32.36 SS G_CDS: -1.11 Total: -33.47 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -35.66 -6.86 -42.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592210462.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.944 kcal (2) G-P(sol) polarization free energy of solvation -35.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds