Wall clock time and date at job start Mon Mar 30 2020 02:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09007 * 109.46736 * 2 1 4 4 C 1.50700 * 109.47274 * 240.00570 * 2 1 3 5 5 H 1.07996 * 119.99945 * 245.40953 * 4 2 1 6 6 C 1.37880 * 119.99978 * 65.39895 * 4 2 1 7 7 N 1.31510 * 120.00074 * 5.76482 * 6 4 2 8 8 Si 1.86796 * 119.99844 * 185.76137 * 6 4 2 9 9 H 1.48504 * 109.46899 * 84.99900 * 8 6 4 10 10 H 1.48506 * 109.47071 * 325.00319 * 8 6 4 11 11 H 1.48497 * 109.47372 * 205.00117 * 8 6 4 12 12 C 1.50696 * 109.47180 * 119.99849 * 2 1 3 13 13 O 1.21285 * 119.99500 * 100.60036 * 12 2 1 14 14 N 1.34770 * 120.00409 * 280.60687 * 12 2 1 15 15 C 1.50225 * 120.55308 * 5.96265 * 14 12 2 16 16 C 1.46651 * 106.98700 * 248.52651 * 15 14 12 17 17 C 1.52475 * 114.10789 * 301.85803 * 16 15 14 18 18 N 1.43914 * 105.41505 * 90.35502 * 17 16 15 19 19 C 1.48821 * 112.04861 * 261.29394 * 18 17 16 20 20 C 1.43669 * 120.54982 * 185.68995 * 14 12 2 21 21 H 1.09004 * 108.13675 * 212.58931 * 20 14 12 22 22 C 1.50698 * 108.14144 * 329.11370 * 20 14 12 23 23 O 1.20826 * 119.99814 * 333.42371 * 22 20 14 24 24 O 1.34228 * 119.99964 * 153.42876 * 22 20 14 25 25 H 1.09002 * 109.46900 * 304.21699 * 1 2 3 26 26 H 1.09001 * 109.47209 * 64.21608 * 1 2 3 27 27 H 1.08999 * 109.46983 * 184.21616 * 1 2 3 28 28 H 0.96995 * 120.00059 * 179.97438 * 7 6 4 29 29 H 1.09002 * 109.95472 * 7.89429 * 15 14 12 30 30 H 1.09000 * 109.95508 * 129.07061 * 15 14 12 31 31 H 1.08999 * 108.55659 * 63.05536 * 16 15 14 32 32 H 1.08997 * 108.55761 * 180.81654 * 16 15 14 33 33 H 1.09000 * 110.25090 * 209.32762 * 17 16 15 34 34 H 1.09003 * 110.25421 * 331.38289 * 17 16 15 35 35 H 1.00909 * 110.99765 * 136.56955 * 18 17 16 36 36 H 1.08996 * 109.23453 * 159.31337 * 19 18 17 37 37 H 1.09004 * 109.23178 * 278.68781 * 19 18 17 38 38 H 0.96702 * 116.99939 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.5794 -1.6365 -1.1339 6 6 1.7936 -0.1778 -2.4797 7 7 1.2282 1.0042 -2.5936 8 14 2.2731 -1.1351 -4.0103 9 1 1.1852 -2.0825 -4.3627 10 1 3.5236 -1.8924 -3.7490 11 1 2.4918 -0.1916 -5.1361 12 6 2.0324 -0.7104 1.2304 13 8 2.4167 -1.8581 1.1535 14 7 2.0545 -0.0704 2.4163 15 6 1.4594 1.3020 2.5546 16 6 2.5716 2.2303 2.7829 17 6 3.4146 1.9023 4.0103 18 7 4.4564 1.0297 3.5368 19 6 4.1485 -0.4023 3.8002 20 6 2.6424 -0.6917 3.5706 21 1 2.0933 -0.3591 4.4516 22 6 2.4573 -2.1821 3.4466 23 8 1.5334 -2.6249 2.8060 24 8 3.3186 -3.0177 4.0479 25 1 -0.3633 0.5779 0.8498 26 1 -0.3634 0.4470 -0.9254 27 1 -0.3633 -1.0249 0.0756 28 1 1.0605 1.3789 -3.4723 29 1 0.9312 1.5723 1.6402 30 1 0.7732 1.3264 3.4011 31 1 3.2179 2.2197 1.9053 32 1 2.1660 3.2350 2.9017 33 1 3.8453 2.8130 4.4265 34 1 2.8080 1.3936 4.7597 35 1 5.3495 1.2859 3.9306 36 1 4.7406 -1.0260 3.1305 37 1 4.4050 -0.6408 4.8324 38 1 3.1592 -3.9653 3.9396 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592210462.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:36 Heat of formation + Delta-G solvation = -119.526707 kcal Electronic energy + Delta-G solvation = -22678.877422 eV Core-core repulsion = 19328.420191 eV Total energy + Delta-G solvation = -3350.457231 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.15857 -40.08232 -38.75278 -36.93704 -35.84784 -35.25028 -33.86292 -32.44921 -29.31220 -27.31967 -26.96380 -24.96962 -23.79305 -22.68118 -21.47808 -20.00903 -18.81404 -18.45949 -18.21644 -17.40954 -17.22158 -16.70942 -16.35832 -16.09854 -15.91913 -15.15591 -15.09105 -14.72064 -14.37760 -14.11698 -14.04829 -13.61121 -13.33724 -13.03789 -12.96019 -12.74490 -12.69125 -12.45204 -12.23470 -11.97797 -11.86011 -11.77886 -11.70299 -11.40631 -11.08603 -10.52666 -10.06797 -9.59539 -9.23780 -8.18913 -6.24936 1.28736 1.36850 1.38393 1.48903 1.86682 2.09242 2.31882 2.44257 3.12901 3.34863 3.68420 3.71563 4.07353 4.16154 4.20608 4.39547 4.46791 4.54430 4.68708 4.70152 4.79583 4.91020 4.93716 5.00043 5.04861 5.18912 5.40758 5.51904 5.67457 5.74206 5.75003 5.86143 6.13513 6.21210 6.51640 6.66212 6.80840 7.09113 7.39866 7.59687 8.90043 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.020461 B = 0.007138 C = 0.006187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.097670 B = 3921.673410 C = 4524.407974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.037 3.963 3 H 0.045 0.955 4 C -0.528 4.528 5 H 0.038 0.962 6 C 0.023 3.977 7 N -0.908 5.908 8 Si 0.951 3.049 9 H -0.276 1.276 10 H -0.281 1.281 11 H -0.270 1.270 12 C 0.523 3.477 13 O -0.567 6.567 14 N -0.604 5.604 15 C 0.113 3.887 16 C -0.141 4.141 17 C 0.065 3.935 18 N -0.705 5.705 19 C 0.068 3.932 20 C 0.156 3.844 21 H 0.142 0.858 22 C 0.468 3.532 23 O -0.524 6.524 24 O -0.512 6.512 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.014 0.986 28 H 0.266 0.734 29 H 0.085 0.915 30 H 0.103 0.897 31 H 0.048 0.952 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.061 0.939 35 H 0.356 0.644 36 H 0.050 0.950 37 H 0.088 0.912 38 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.390 4.390 18.418 19.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.016 3.984 3 H 0.063 0.937 4 C -0.566 4.566 5 H 0.056 0.944 6 C -0.176 4.176 7 N -0.547 5.547 8 Si 0.777 3.223 9 H -0.201 1.201 10 H -0.206 1.206 11 H -0.195 1.195 12 C 0.315 3.685 13 O -0.446 6.446 14 N -0.340 5.340 15 C -0.006 4.006 16 C -0.180 4.180 17 C -0.064 4.064 18 N -0.338 5.338 19 C -0.062 4.062 20 C 0.049 3.951 21 H 0.159 0.841 22 C 0.309 3.691 23 O -0.411 6.411 24 O -0.325 6.325 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.033 0.967 28 H 0.075 0.925 29 H 0.103 0.897 30 H 0.121 0.879 31 H 0.067 0.933 32 H 0.114 0.886 33 H 0.116 0.884 34 H 0.079 0.921 35 H 0.176 0.824 36 H 0.068 0.932 37 H 0.106 0.894 38 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges 3.091 4.196 17.474 18.235 hybrid contribution 0.243 -1.492 -0.536 1.604 sum 3.334 2.704 16.938 17.474 Atomic orbital electron populations 1.21534 0.95804 0.98532 1.01210 1.18663 0.94464 0.96042 0.89247 0.93737 1.21193 1.35886 1.07919 0.91603 0.94398 1.25539 0.95205 0.95682 1.01206 1.69977 1.43849 1.16279 1.24606 0.85689 0.78445 0.78811 0.79401 1.20150 1.20600 1.19468 1.21488 0.76096 0.85787 0.85172 1.90545 1.49104 1.19384 1.85532 1.48157 1.59333 1.19499 1.07023 1.21575 0.96476 0.78545 1.04046 1.20969 0.97318 0.99677 1.00025 1.21509 0.93224 0.96989 0.94709 1.59950 1.06694 1.01582 1.65583 1.22838 0.92050 0.90282 1.01077 1.20534 0.97576 0.85072 0.91948 0.84106 1.23613 0.79501 0.91160 0.74791 1.90763 1.34630 1.78980 1.36747 1.84394 1.54297 1.23618 1.70176 0.92568 0.92244 0.96653 0.92500 0.89668 0.87864 0.93317 0.88563 0.88376 0.92089 0.82371 0.93172 0.89361 0.71970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.55 8.76 71.98 0.63 -4.92 16 2 C 0.04 1.97 1.64 -12.29 -0.02 1.95 16 3 H 0.04 2.43 7.15 -2.38 -0.02 2.41 16 4 C -0.53 -32.32 8.30 25.60 0.21 -32.11 16 5 H 0.04 2.51 6.89 -2.91 -0.02 2.49 16 6 C 0.02 1.35 5.23 84.66 0.44 1.80 16 7 N -0.91 -52.53 11.97 21.45 0.26 -52.28 16 8 Si 0.95 46.84 29.54 68.60 2.03 48.86 16 9 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 10 H -0.28 -14.02 7.11 99.48 0.71 -13.32 16 11 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 12 C 0.52 25.93 6.12 87.66 0.54 26.47 16 13 O -0.57 -32.32 11.47 21.42 0.25 -32.07 16 14 N -0.60 -21.94 2.57 -805.83 -2.07 -24.01 16 15 C 0.11 3.09 5.47 83.69 0.46 3.55 16 16 C -0.14 -3.24 5.32 28.46 0.15 -3.08 16 17 C 0.07 1.10 6.25 86.69 0.54 1.64 16 18 N -0.70 -15.49 6.20 -513.27 -3.18 -18.67 16 19 C 0.07 1.66 5.80 86.64 0.50 2.17 16 20 C 0.16 4.57 2.20 45.48 0.10 4.67 16 21 H 0.14 2.95 6.89 -2.38 -0.02 2.93 16 22 C 0.47 16.65 6.23 71.24 0.44 17.10 16 23 O -0.52 -24.24 14.05 30.07 0.42 -23.81 16 24 O -0.51 -13.81 12.56 -51.40 -0.65 -14.46 16 25 H 0.06 2.27 6.30 -2.39 -0.02 2.25 16 26 H 0.06 3.12 6.66 -2.39 -0.02 3.11 16 27 H 0.01 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 29 H 0.09 2.73 4.52 -2.39 -0.01 2.72 16 30 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.05 1.53 7.86 -2.39 -0.02 1.51 16 32 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.06 0.84 6.13 -2.39 -0.01 0.83 16 35 H 0.36 5.88 8.89 -89.69 -0.80 5.08 16 36 H 0.05 1.58 7.94 -2.39 -0.02 1.56 16 37 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.42 8.56 9.10 -74.06 -0.67 7.89 16 Total: -1.00 -82.08 298.36 0.69 -81.39 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -0.37 Total: 15.82 kcal Atomic # 6 Polarization: 15.22 SS G_CDS: 4.00 Total: 19.22 kcal Atomic # 7 Polarization: -89.96 SS G_CDS: -5.00 Total: -94.95 kcal Atomic # 8 Polarization: -70.36 SS G_CDS: 0.02 Total: -70.34 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.86 kcal Total: -82.08 0.69 -81.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592210462.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.136 kcal (2) G-P(sol) polarization free energy of solvation -82.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds