Wall clock time and date at job start Mon Mar 30 2020 02:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 110.87649 * 2 1 4 4 C 1.55143 * 110.98979 * 236.14972 * 2 1 3 5 5 C 1.54319 * 103.01914 * 206.25443 * 4 2 1 6 6 N 1.47448 * 107.23309 * 22.28224 * 5 4 2 7 7 C 1.46904 * 110.99374 * 123.25678 * 6 5 4 8 8 C 1.50701 * 109.47272 * 69.87889 * 7 6 5 9 9 O 1.21296 * 119.99944 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99785 * 179.97438 * 8 7 6 11 11 C 1.37097 * 120.00115 * 359.97438 * 10 8 7 12 12 H 1.07995 * 120.00555 * 30.58317 * 11 10 8 13 13 C 1.38958 * 120.00023 * 210.58088 * 11 10 8 14 14 N 1.31412 * 119.99789 * 40.36848 * 13 11 10 15 15 Si 1.86792 * 119.99968 * 220.09763 * 13 11 10 16 16 H 1.48500 * 109.47074 * 180.27372 * 15 13 11 17 17 H 1.48503 * 109.47129 * 300.27224 * 15 13 11 18 18 H 1.48499 * 109.47487 * 60.27219 * 15 13 11 19 19 C 1.46498 * 119.99646 * 180.02562 * 10 8 7 20 20 C 1.50709 * 109.47201 * 266.15937 * 19 10 8 21 21 O 1.20832 * 119.99573 * 359.97438 * 20 19 10 22 22 O 1.34225 * 120.00470 * 180.02562 * 20 19 10 23 23 C 1.47838 * 108.56781 * 0.99378 * 6 5 4 24 24 H 1.08996 * 109.46867 * 182.39809 * 1 2 3 25 25 H 1.09002 * 109.46890 * 302.39351 * 1 2 3 26 26 H 1.08997 * 109.46954 * 62.39416 * 1 2 3 27 27 H 1.09003 * 110.69994 * 87.87718 * 4 2 1 28 28 H 1.08994 * 110.85916 * 324.70831 * 4 2 1 29 29 H 1.09001 * 109.88871 * 262.88285 * 5 4 2 30 30 H 1.09003 * 109.88769 * 141.69080 * 5 4 2 31 31 H 1.09001 * 109.47553 * 309.87024 * 7 6 5 32 32 H 1.09005 * 109.46556 * 189.87354 * 7 6 5 33 33 H 0.97004 * 119.99709 * 5.57861 * 14 13 11 34 34 H 1.09002 * 109.47858 * 26.15538 * 19 10 8 35 35 H 1.09002 * 109.47230 * 146.16238 * 19 10 8 36 36 H 0.96694 * 117.00176 * 180.02562 * 22 20 19 37 37 H 1.08998 * 110.38088 * 94.72529 * 23 6 5 38 38 H 1.09001 * 110.37669 * 217.07463 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9184 1.0184 0.0000 4 6 2.0857 -0.8068 -1.2030 5 6 3.4692 -1.2710 -0.7009 6 7 3.4313 -1.2422 0.7728 7 6 3.7612 -2.5593 1.3336 8 6 5.2207 -2.8534 1.1003 9 8 5.9175 -2.0454 0.5233 10 7 5.7517 -4.0141 1.5329 11 6 4.9642 -4.9271 2.1856 12 1 3.9129 -4.9999 1.9497 13 6 5.5189 -5.7587 3.1508 14 7 6.4048 -5.2836 3.9971 15 14 4.9994 -7.5502 3.2502 16 1 5.7269 -8.2157 4.3607 17 1 3.5375 -7.6287 3.4989 18 1 5.3209 -8.2306 1.9700 19 6 7.1707 -4.2997 1.3067 20 6 7.3272 -5.0901 0.0331 21 8 6.3532 -5.3850 -0.6184 22 8 8.5483 -5.4674 -0.3769 23 6 2.0850 -0.8064 1.2007 24 1 -0.3633 -1.0267 0.0430 25 1 -0.3633 0.5506 0.8678 26 1 -0.3633 0.4762 -0.9107 27 1 2.1885 -0.1685 -2.0805 28 1 1.4486 -1.6632 -1.4234 29 1 4.2420 -0.5941 -1.0652 30 1 3.6681 -2.2852 -1.0471 31 1 3.1543 -3.3235 0.8478 32 1 3.5570 -2.5597 2.4043 33 1 6.6118 -4.3359 4.0013 34 1 7.7211 -3.3626 1.2226 35 1 7.5629 -4.8777 2.1435 36 1 8.5985 -5.9724 -1.2000 37 1 1.4523 -1.6708 1.4020 38 1 2.1544 -0.1718 2.0842 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594422823.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:00 Heat of formation + Delta-G solvation = -114.515913 kcal Electronic energy + Delta-G solvation = -21671.092498 eV Core-core repulsion = 18320.852552 eV Total energy + Delta-G solvation = -3350.239946 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.79871 -39.09454 -37.86876 -35.52449 -34.89444 -32.97053 -31.63228 -29.66621 -28.61458 -26.67457 -24.72843 -24.12021 -21.50002 -20.48288 -20.21259 -19.35770 -17.54405 -17.18126 -16.26947 -16.08668 -15.88272 -15.26358 -14.78021 -14.38203 -14.08783 -13.88796 -13.51428 -13.29776 -12.92177 -12.81874 -12.32532 -12.18057 -12.03523 -11.95598 -11.47355 -11.38728 -10.98834 -10.82512 -10.81390 -10.72578 -10.55995 -10.41373 -10.30532 -10.19842 -9.93410 -9.18402 -8.57172 -8.02731 -7.81118 -6.88916 -4.08548 2.95942 3.18198 3.29883 3.38755 3.48716 3.82921 4.16388 4.26625 4.60053 4.77142 4.84960 4.88575 5.07702 5.42086 5.53277 5.57501 5.68397 5.81077 5.83376 5.89998 5.97014 6.00653 6.06132 6.08038 6.10339 6.24549 6.27467 6.33678 6.38003 6.55867 7.06838 7.37826 7.41738 7.43096 7.90715 8.19150 8.57968 8.84831 9.30885 9.67013 10.33511 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.019469 B = 0.005991 C = 0.005129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.873119 B = 4672.613384 C = 5457.710584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.102 4.102 3 H 0.082 0.918 4 C -0.140 4.140 5 C 0.056 3.944 6 N -0.514 5.514 7 C 0.059 3.941 8 C 0.483 3.517 9 O -0.584 6.584 10 N -0.434 5.434 11 C -0.445 4.445 12 H 0.085 0.915 13 C 0.027 3.973 14 N -0.840 5.840 15 Si 1.051 2.949 16 H -0.278 1.278 17 H -0.280 1.280 18 H -0.283 1.283 19 C 0.114 3.886 20 C 0.464 3.536 21 O -0.506 6.506 22 O -0.527 6.527 23 C 0.047 3.953 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.097 0.903 33 H 0.282 0.718 34 H 0.107 0.893 35 H 0.122 0.878 36 H 0.396 0.604 37 H 0.045 0.955 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.781 4.056 -5.061 8.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.121 4.121 3 H 0.100 0.900 4 C -0.179 4.179 5 C -0.072 4.072 6 N -0.238 5.238 7 C -0.071 4.071 8 C 0.273 3.727 9 O -0.467 6.467 10 N -0.155 5.155 11 C -0.571 4.571 12 H 0.103 0.897 13 C -0.185 4.185 14 N -0.470 5.470 15 Si 0.876 3.124 16 H -0.204 1.204 17 H -0.206 1.206 18 H -0.210 1.210 19 C -0.012 4.012 20 C 0.304 3.696 21 O -0.392 6.392 22 O -0.338 6.338 23 C -0.081 4.081 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.096 0.904 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.115 0.885 33 H 0.092 0.908 34 H 0.125 0.875 35 H 0.139 0.861 36 H 0.254 0.746 37 H 0.063 0.937 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.045 3.522 -4.148 7.420 hybrid contribution -0.900 0.174 -1.651 1.888 sum -5.944 3.696 -5.799 9.090 Atomic orbital electron populations 1.21711 0.94721 1.01795 1.01549 1.22277 0.95179 0.99719 0.94909 0.89950 1.22918 0.97282 0.99624 0.98045 1.22698 0.95936 1.01043 0.87526 1.63248 1.25811 1.26712 1.08068 1.21848 0.94726 0.89121 1.01454 1.20211 0.89756 0.80779 0.81984 1.90536 1.62357 1.47573 1.46270 1.43138 1.06827 1.15279 1.50241 1.20011 0.95430 1.19147 1.22511 0.89701 1.26226 0.96204 1.05597 0.90502 1.70804 1.32238 1.17680 1.26286 0.83794 0.76796 0.75016 0.76783 1.20360 1.20574 1.20967 1.20866 0.87711 0.99903 0.92714 1.24721 0.79852 0.77235 0.87756 1.90634 1.40096 1.52737 1.55729 1.84594 1.34654 1.69414 1.45133 1.23104 0.88872 0.98172 0.97914 0.92706 0.92542 0.92658 0.91177 0.91780 0.90411 0.93089 0.92814 0.88455 0.90762 0.87512 0.86053 0.74621 0.93684 0.90479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.30 37.16 0.35 -1.06 16 2 C -0.10 -1.27 3.63 -88.48 -0.32 -1.59 16 3 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 4 C -0.14 -1.90 6.41 -24.91 -0.16 -2.06 16 5 C 0.06 0.99 5.65 -2.83 -0.02 0.98 16 6 N -0.51 -9.65 4.85 -232.68 -1.13 -10.78 16 7 C 0.06 1.23 3.65 -4.97 -0.02 1.22 16 8 C 0.48 11.81 7.28 -10.99 -0.08 11.73 16 9 O -0.58 -15.26 15.07 5.54 0.08 -15.18 16 10 N -0.43 -10.78 1.95 -116.09 -0.23 -11.00 16 11 C -0.45 -11.29 8.46 -14.93 -0.13 -11.42 16 12 H 0.09 2.15 7.00 -52.49 -0.37 1.78 16 13 C 0.03 0.67 4.51 -17.46 -0.08 0.59 16 14 N -0.84 -21.62 12.23 55.50 0.68 -20.94 16 15 Si 1.05 22.46 30.05 -169.99 -5.11 17.35 16 16 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 17 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 18 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 19 C 0.11 2.64 5.53 -5.19 -0.03 2.61 16 20 C 0.46 10.28 8.38 36.01 0.30 10.58 16 21 O -0.51 -12.61 17.13 -18.75 -0.32 -12.93 16 22 O -0.53 -9.24 13.42 -39.24 -0.53 -9.77 16 23 C 0.05 0.70 6.15 -2.30 -0.01 0.69 16 24 H 0.05 0.56 8.10 -51.93 -0.42 0.13 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.06 0.84 8.04 -51.93 -0.42 0.42 16 29 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 30 H 0.05 1.01 7.31 -51.93 -0.38 0.63 16 31 H 0.05 1.12 7.46 -51.93 -0.39 0.74 16 32 H 0.10 2.01 8.03 -51.93 -0.42 1.59 16 33 H 0.28 7.34 8.13 -40.82 -0.33 7.01 16 34 H 0.11 2.38 7.31 -51.93 -0.38 2.00 16 35 H 0.12 2.85 5.75 -51.93 -0.30 2.55 16 36 H 0.40 4.96 9.10 45.56 0.41 5.38 16 37 H 0.04 0.65 7.67 -51.93 -0.40 0.25 16 38 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 317.73 15.07 4.79 4.79 Total: -1.00 -30.71 317.73 -6.67 -37.39 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -4.71 Total: 8.81 kcal Atomic # 6 Polarization: 12.46 SS G_CDS: -0.20 Total: 12.27 kcal Atomic # 7 Polarization: -42.05 SS G_CDS: -0.68 Total: -42.72 kcal Atomic # 8 Polarization: -37.11 SS G_CDS: -0.76 Total: -37.87 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.11 Total: 17.35 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.71 -6.67 -37.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594422823.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.129 kcal (2) G-P(sol) polarization free energy of solvation -30.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds