Wall clock time and date at job start Mon Mar 30 2020 02:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 110.87649 * 2 1 4 4 C 1.55143 * 110.98979 * 236.14972 * 2 1 3 5 5 C 1.54319 * 103.01914 * 206.25443 * 4 2 1 6 6 N 1.47448 * 107.23309 * 22.28224 * 5 4 2 7 7 C 1.46904 * 110.99374 * 123.25678 * 6 5 4 8 8 C 1.50701 * 109.47272 * 69.87889 * 7 6 5 9 9 O 1.21296 * 119.99944 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99785 * 179.97438 * 8 7 6 11 11 C 1.37097 * 120.00115 * 359.97438 * 10 8 7 12 12 H 1.07995 * 120.00555 * 30.58317 * 11 10 8 13 13 C 1.38958 * 120.00023 * 210.58088 * 11 10 8 14 14 N 1.31412 * 119.99789 * 40.36848 * 13 11 10 15 15 Si 1.86792 * 119.99968 * 220.09763 * 13 11 10 16 16 H 1.48500 * 109.47074 * 180.27372 * 15 13 11 17 17 H 1.48503 * 109.47129 * 300.27224 * 15 13 11 18 18 H 1.48499 * 109.47487 * 60.27219 * 15 13 11 19 19 C 1.46498 * 119.99646 * 180.02562 * 10 8 7 20 20 C 1.50709 * 109.47201 * 266.15937 * 19 10 8 21 21 O 1.20832 * 119.99573 * 359.97438 * 20 19 10 22 22 O 1.34225 * 120.00470 * 180.02562 * 20 19 10 23 23 C 1.47838 * 108.56781 * 0.99378 * 6 5 4 24 24 H 1.08996 * 109.46867 * 182.39809 * 1 2 3 25 25 H 1.09002 * 109.46890 * 302.39351 * 1 2 3 26 26 H 1.08997 * 109.46954 * 62.39416 * 1 2 3 27 27 H 1.09003 * 110.69994 * 87.87718 * 4 2 1 28 28 H 1.08994 * 110.85916 * 324.70831 * 4 2 1 29 29 H 1.09001 * 109.88871 * 262.88285 * 5 4 2 30 30 H 1.09003 * 109.88769 * 141.69080 * 5 4 2 31 31 H 1.09001 * 109.47553 * 309.87024 * 7 6 5 32 32 H 1.09005 * 109.46556 * 189.87354 * 7 6 5 33 33 H 0.97004 * 119.99709 * 5.57861 * 14 13 11 34 34 H 1.09002 * 109.47858 * 26.15538 * 19 10 8 35 35 H 1.09002 * 109.47230 * 146.16238 * 19 10 8 36 36 H 0.96694 * 117.00176 * 180.02562 * 22 20 19 37 37 H 1.08998 * 110.38088 * 94.72529 * 23 6 5 38 38 H 1.09001 * 110.37669 * 217.07463 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9184 1.0184 0.0000 4 6 2.0857 -0.8068 -1.2030 5 6 3.4692 -1.2710 -0.7009 6 7 3.4313 -1.2422 0.7728 7 6 3.7612 -2.5593 1.3336 8 6 5.2207 -2.8534 1.1003 9 8 5.9175 -2.0454 0.5233 10 7 5.7517 -4.0141 1.5329 11 6 4.9642 -4.9271 2.1856 12 1 3.9129 -4.9999 1.9497 13 6 5.5189 -5.7587 3.1508 14 7 6.4048 -5.2836 3.9971 15 14 4.9994 -7.5502 3.2502 16 1 5.7269 -8.2157 4.3607 17 1 3.5375 -7.6287 3.4989 18 1 5.3209 -8.2306 1.9700 19 6 7.1707 -4.2997 1.3067 20 6 7.3272 -5.0901 0.0331 21 8 6.3532 -5.3850 -0.6184 22 8 8.5483 -5.4674 -0.3769 23 6 2.0850 -0.8064 1.2007 24 1 -0.3633 -1.0267 0.0430 25 1 -0.3633 0.5506 0.8678 26 1 -0.3633 0.4762 -0.9107 27 1 2.1885 -0.1685 -2.0805 28 1 1.4486 -1.6632 -1.4234 29 1 4.2420 -0.5941 -1.0652 30 1 3.6681 -2.2852 -1.0471 31 1 3.1543 -3.3235 0.8478 32 1 3.5570 -2.5597 2.4043 33 1 6.6118 -4.3359 4.0013 34 1 7.7211 -3.3626 1.2226 35 1 7.5629 -4.8777 2.1435 36 1 8.5985 -5.9724 -1.2000 37 1 1.4523 -1.6708 1.4020 38 1 2.1544 -0.1718 2.0842 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594422823.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:59 Heat of formation + Delta-G solvation = -135.809867 kcal Electronic energy + Delta-G solvation = -21672.015873 eV Core-core repulsion = 18320.852552 eV Total energy + Delta-G solvation = -3351.163321 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.57653 -40.64972 -39.44452 -37.25071 -36.76747 -34.25771 -33.57743 -31.02100 -30.22724 -28.10597 -26.44739 -25.60099 -23.13041 -21.96634 -21.40719 -21.12217 -19.30746 -18.96126 -18.06558 -17.69949 -17.34698 -16.93278 -16.54095 -15.95062 -15.74314 -15.58008 -14.92583 -14.65283 -14.31729 -14.07630 -13.96394 -13.79228 -13.57042 -13.28006 -13.03254 -12.88931 -12.69869 -12.54591 -12.13573 -12.05380 -11.95678 -11.89908 -11.76811 -11.59294 -11.53326 -11.07172 -10.48216 -9.98386 -9.28730 -8.87002 -6.07723 1.17355 1.44904 1.55507 1.65532 1.82287 2.04235 2.42116 2.63730 2.92411 3.16290 3.63305 3.69204 3.94645 4.01939 4.24433 4.28790 4.30149 4.37813 4.41917 4.49642 4.57468 4.60681 4.69442 4.83402 4.84247 4.97927 5.06105 5.17395 5.28782 5.44587 5.45100 5.53450 5.84426 5.97083 6.08748 6.20584 6.89609 6.98007 7.37264 7.74054 8.33420 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.019469 B = 0.005991 C = 0.005129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.873119 B = 4672.613384 C = 5457.710584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.092 4.092 3 H 0.087 0.913 4 C -0.130 4.130 5 C 0.056 3.944 6 N -0.532 5.532 7 C 0.072 3.928 8 C 0.469 3.531 9 O -0.609 6.609 10 N -0.442 5.442 11 C -0.458 4.458 12 H 0.081 0.919 13 C -0.001 4.001 14 N -0.852 5.852 15 Si 1.096 2.904 16 H -0.275 1.275 17 H -0.261 1.261 18 H -0.286 1.286 19 C 0.110 3.890 20 C 0.471 3.529 21 O -0.537 6.537 22 O -0.509 6.509 23 C 0.042 3.958 24 H 0.053 0.947 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.089 0.911 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.022 0.978 31 H 0.051 0.949 32 H 0.097 0.903 33 H 0.271 0.729 34 H 0.109 0.891 35 H 0.118 0.882 36 H 0.423 0.577 37 H 0.050 0.950 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.057 3.886 -5.393 9.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.111 4.111 3 H 0.105 0.895 4 C -0.169 4.169 5 C -0.072 4.072 6 N -0.257 5.257 7 C -0.058 4.058 8 C 0.260 3.740 9 O -0.494 6.494 10 N -0.163 5.163 11 C -0.583 4.583 12 H 0.099 0.901 13 C -0.210 4.210 14 N -0.482 5.482 15 Si 0.917 3.083 16 H -0.200 1.200 17 H -0.185 1.185 18 H -0.213 1.213 19 C -0.016 4.016 20 C 0.313 3.687 21 O -0.427 6.427 22 O -0.322 6.322 23 C -0.085 4.085 24 H 0.072 0.928 25 H 0.087 0.913 26 H 0.089 0.911 27 H 0.108 0.892 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.041 0.959 31 H 0.068 0.932 32 H 0.115 0.885 33 H 0.081 0.919 34 H 0.127 0.873 35 H 0.135 0.865 36 H 0.285 0.715 37 H 0.068 0.932 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.307 3.354 -4.486 8.435 hybrid contribution -0.373 0.254 -1.576 1.640 sum -6.680 3.608 -6.062 9.715 Atomic orbital electron populations 1.21674 0.92329 1.02190 1.02963 1.22270 0.96981 0.99140 0.92759 0.89510 1.22875 0.94505 1.00339 0.99147 1.22626 0.98277 0.99051 0.87247 1.63215 1.28594 1.25193 1.08654 1.21657 0.92378 0.90361 1.01433 1.20890 0.91171 0.80399 0.81562 1.90497 1.63306 1.48236 1.47392 1.43299 1.07393 1.15381 1.50219 1.20120 0.95636 1.19577 1.23003 0.90142 1.27341 0.95692 1.08192 0.89802 1.70897 1.33181 1.17000 1.27152 0.83183 0.77664 0.70931 0.76522 1.19994 1.18543 1.21270 1.20857 0.87116 1.00242 0.93397 1.24321 0.80504 0.76712 0.87140 1.90624 1.41394 1.54059 1.56588 1.84503 1.31790 1.69238 1.46660 1.23258 0.87075 0.98783 0.99339 0.92809 0.91343 0.91096 0.89205 0.91116 0.92134 0.95940 0.93159 0.88471 0.91914 0.87312 0.86479 0.71526 0.93183 0.89759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.25 9.30 71.98 0.67 -1.59 16 2 C -0.09 -2.10 3.63 -9.41 -0.03 -2.13 16 3 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 4 C -0.13 -3.32 6.41 31.78 0.20 -3.12 16 5 C 0.06 2.01 5.65 86.65 0.49 2.50 16 6 N -0.53 -20.09 4.85 -890.06 -4.32 -24.41 16 7 C 0.07 3.10 3.65 85.56 0.31 3.41 16 8 C 0.47 23.56 7.28 87.66 0.64 24.20 16 9 O -0.61 -32.79 15.07 -3.08 -0.05 -32.83 16 10 N -0.44 -22.40 1.95 -639.58 -1.25 -23.65 16 11 C -0.46 -23.41 8.46 84.04 0.71 -22.69 16 12 H 0.08 4.12 7.00 -2.91 -0.02 4.10 16 13 C 0.00 -0.07 4.51 84.93 0.38 0.31 16 14 N -0.85 -43.92 12.23 21.67 0.27 -43.65 16 15 Si 1.10 44.52 30.05 68.60 2.06 46.58 16 16 H -0.28 -10.97 7.11 99.48 0.71 -10.26 16 17 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 18 H -0.29 -11.76 7.11 99.48 0.71 -11.05 16 19 C 0.11 5.14 5.53 85.64 0.47 5.62 16 20 C 0.47 20.76 8.38 71.24 0.60 21.36 16 21 O -0.54 -26.81 17.13 21.95 0.38 -26.44 16 22 O -0.51 -17.00 13.42 -51.36 -0.69 -17.69 16 23 C 0.04 1.21 6.15 86.78 0.53 1.74 16 24 H 0.05 0.93 8.10 -2.39 -0.02 0.91 16 25 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.07 1.00 8.14 -2.39 -0.02 0.99 16 27 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.07 1.72 8.04 -2.39 -0.02 1.70 16 29 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.02 0.91 7.31 -2.39 -0.02 0.89 16 31 H 0.05 2.16 7.46 -2.39 -0.02 2.14 16 32 H 0.10 4.08 8.03 -2.38 -0.02 4.06 16 33 H 0.27 14.35 8.13 -92.71 -0.75 13.60 16 34 H 0.11 4.97 7.31 -2.39 -0.02 4.95 16 35 H 0.12 5.56 5.75 -2.39 -0.01 5.55 16 36 H 0.42 9.57 9.10 -74.06 -0.67 8.89 16 37 H 0.05 1.38 7.67 -2.39 -0.02 1.36 16 38 H 0.08 2.26 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -66.13 317.73 1.79 -64.34 By element: Atomic # 1 Polarization: 27.74 SS G_CDS: 0.41 Total: 28.15 kcal Atomic # 6 Polarization: 24.63 SS G_CDS: 4.98 Total: 29.60 kcal Atomic # 7 Polarization: -86.42 SS G_CDS: -5.30 Total: -91.72 kcal Atomic # 8 Polarization: -76.60 SS G_CDS: -0.36 Total: -76.96 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.06 Total: 46.58 kcal Total: -66.13 1.79 -64.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594422823.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.470 kcal (2) G-P(sol) polarization free energy of solvation -66.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds