Wall clock time and date at job start Mon Mar 30 2020 02:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.74810 * 2 1 4 4 C 1.53373 * 109.60645 * 239.57965 * 2 1 3 5 5 N 1.46968 * 108.63521 * 190.83388 * 4 2 1 6 6 C 1.34773 * 120.59376 * 235.20607 * 5 4 2 7 7 O 1.21280 * 119.99731 * 359.97438 * 6 5 4 8 8 C 1.50700 * 120.00052 * 179.97438 * 6 5 4 9 9 C 1.50703 * 109.46867 * 179.97438 * 8 6 5 10 10 O 1.20824 * 120.00355 * 0.02562 * 9 8 6 11 11 O 1.34235 * 119.99410 * 179.97438 * 9 8 6 12 12 C 1.46961 * 118.81250 * 55.21892 * 5 4 2 13 13 C 1.53812 * 108.58238 * 304.65114 * 12 5 4 14 14 H 1.08993 * 109.75699 * 289.94526 * 13 12 5 15 15 C 1.53007 * 109.69520 * 169.28676 * 13 12 5 16 16 N 1.46965 * 109.61036 * 120.43350 * 2 1 3 17 17 C 1.36933 * 120.59255 * 354.94643 * 16 2 1 18 18 H 1.07996 * 120.00138 * 126.96584 * 17 16 2 19 19 C 1.38818 * 119.99948 * 306.95444 * 17 16 2 20 20 N 1.31618 * 119.99773 * 337.42838 * 19 17 16 21 21 Si 1.86799 * 119.99814 * 157.42984 * 19 17 16 22 22 H 1.48496 * 109.46953 * 179.97438 * 21 19 17 23 23 H 1.48497 * 109.46999 * 300.00086 * 21 19 17 24 24 H 1.48496 * 109.47046 * 60.00081 * 21 19 17 25 25 H 1.09010 * 109.46684 * 308.05209 * 1 2 3 26 26 H 1.08995 * 109.47196 * 68.04502 * 1 2 3 27 27 H 1.08995 * 109.47578 * 188.05304 * 1 2 3 28 28 H 1.09004 * 109.60644 * 310.57181 * 4 2 1 29 29 H 1.08994 * 109.61354 * 70.91313 * 4 2 1 30 30 H 1.09000 * 109.46878 * 299.99773 * 8 6 5 31 31 H 1.08994 * 109.47124 * 59.99574 * 8 6 5 32 32 H 0.96706 * 116.99261 * 180.02562 * 11 9 8 33 33 H 1.09003 * 109.61134 * 64.52236 * 12 5 4 34 34 H 1.08995 * 109.61198 * 184.85612 * 12 5 4 35 35 H 1.09003 * 109.47230 * 304.53359 * 15 13 12 36 36 H 1.08997 * 109.47053 * 64.53405 * 15 13 12 37 37 H 1.08999 * 109.46812 * 184.53251 * 15 13 12 38 38 H 0.97001 * 119.99718 * 175.06873 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8983 1.0259 0.0000 4 6 2.0447 -0.7316 -1.2459 5 7 3.4907 -0.9489 -1.0991 6 6 4.3491 -0.5132 -2.0423 7 8 3.9302 0.0636 -3.0235 8 6 5.8294 -0.7428 -1.8779 9 6 6.5619 -0.1645 -3.0612 10 8 5.9452 0.3787 -3.9469 11 8 7.8996 -0.2521 -3.1306 12 6 3.9840 -1.6500 0.0946 13 6 3.4698 -0.9135 1.3432 14 1 3.9731 0.0488 1.4367 15 6 3.7384 -1.7606 2.5887 16 7 2.0233 -0.7013 1.1937 17 6 1.1511 -1.1439 2.1520 18 1 1.1762 -2.1757 2.4699 19 6 0.2348 -0.2662 2.7152 20 7 0.4632 1.0297 2.6893 21 14 -1.3223 -0.9246 3.5098 22 1 -2.1279 0.2079 4.0329 23 1 -2.1149 -1.6721 2.5008 24 1 -0.9616 -1.8328 4.6279 25 1 -0.3633 0.6335 0.8093 26 1 -0.3633 0.3842 -0.9531 27 1 -0.3634 -1.0174 0.1440 28 1 1.5383 -1.6921 -1.3413 29 1 1.8512 -0.1264 -2.1315 30 1 6.1731 -0.2571 -0.9646 31 1 6.0265 -1.8130 -1.8166 32 1 8.3249 0.1339 -3.9086 33 1 3.6157 -2.6760 0.0946 34 1 5.0739 -1.6528 0.0930 35 1 3.2910 -2.7463 2.4612 36 1 4.8138 -1.8654 2.7318 37 1 3.3016 -1.2734 3.4605 38 1 -0.2087 1.6473 3.0180 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594466652.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:09 Heat of formation + Delta-G solvation = -90.417248 kcal Electronic energy + Delta-G solvation = -21963.578875 eV Core-core repulsion = 18614.383925 eV Total energy + Delta-G solvation = -3349.194950 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.54186 -39.27034 -37.31550 -35.95144 -34.27765 -32.88794 -31.72593 -30.54432 -27.78495 -26.18563 -25.66452 -23.82967 -22.21811 -20.43216 -19.79221 -18.63647 -18.20528 -16.87838 -16.35481 -16.13662 -15.94338 -15.15925 -14.97571 -14.62744 -14.42916 -13.73009 -13.40984 -13.15729 -12.92202 -12.83838 -12.13300 -12.03388 -11.66856 -11.52111 -11.46644 -11.41185 -10.91673 -10.88617 -10.59983 -10.53620 -10.45467 -10.33965 -10.06596 -9.95158 -9.72784 -9.30319 -8.38689 -7.99308 -6.48886 -5.79736 -3.62557 2.24301 2.70888 2.91231 3.29500 3.37065 3.39412 3.57253 4.37690 4.52560 5.04997 5.05867 5.10395 5.19104 5.34225 5.61186 5.63503 5.86881 6.02440 6.12954 6.24914 6.26837 6.34461 6.44934 6.46503 6.54702 6.74359 6.85305 6.95153 7.01722 7.17235 7.39797 7.63161 7.78218 7.83887 7.91009 8.51483 8.52995 9.10302 9.64357 10.41078 11.08400 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.035606 B = 0.005114 C = 0.004718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.204717 B = 5473.757890 C = 5933.626980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.182 3.818 3 H 0.032 0.968 4 C 0.097 3.903 5 N -0.596 5.596 6 C 0.506 3.494 7 O -0.516 6.516 8 C -0.135 4.135 9 C 0.475 3.525 10 O -0.469 6.469 11 O -0.524 6.524 12 C 0.089 3.911 13 C 0.154 3.846 14 H 0.030 0.970 15 C -0.128 4.128 16 N -0.575 5.575 17 C -0.268 4.268 18 H 0.054 0.946 19 C 0.040 3.960 20 N -0.870 5.870 21 Si 0.880 3.120 22 H -0.290 1.290 23 H -0.278 1.278 24 H -0.278 1.278 25 H 0.089 0.911 26 H 0.025 0.975 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.080 0.920 30 H 0.132 0.868 31 H 0.130 0.870 32 H 0.409 0.591 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.051 0.949 36 H 0.037 0.963 37 H 0.070 0.930 38 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.715 -5.202 -5.028 12.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.076 3.924 3 H 0.050 0.950 4 C -0.027 4.027 5 N -0.329 5.329 6 C 0.291 3.709 7 O -0.391 6.391 8 C -0.176 4.176 9 C 0.314 3.686 10 O -0.353 6.353 11 O -0.337 6.337 12 C -0.035 4.035 13 C 0.047 3.953 14 H 0.048 0.952 15 C -0.186 4.186 16 N -0.300 5.300 17 C -0.398 4.398 18 H 0.071 0.929 19 C -0.163 4.163 20 N -0.509 5.509 21 Si 0.708 3.292 22 H -0.215 1.215 23 H -0.204 1.204 24 H -0.204 1.204 25 H 0.107 0.893 26 H 0.044 0.956 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.098 0.902 30 H 0.150 0.850 31 H 0.148 0.852 32 H 0.268 0.732 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.070 0.930 36 H 0.056 0.944 37 H 0.089 0.911 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 10.034 -4.739 -5.334 12.312 hybrid contribution -0.514 -0.011 0.040 0.516 sum 9.520 -4.750 -5.293 11.883 Atomic orbital electron populations 1.21997 0.94953 1.02825 1.00392 1.20612 0.93885 0.93555 0.84393 0.95041 1.22485 0.78170 1.01043 1.00981 1.47979 1.07625 1.56710 1.20593 1.19763 0.87175 0.80359 0.83578 1.90820 1.78253 1.40847 1.29225 1.21215 0.93934 1.04985 0.97424 1.22735 0.80373 0.77729 0.87758 1.90875 1.67490 1.38352 1.38568 1.84501 1.22600 1.76286 1.50279 1.22631 0.97804 0.96677 0.86423 1.20957 0.87808 0.95379 0.91152 0.95225 1.21668 0.98188 0.99974 0.98788 1.43986 0.99232 1.67567 1.19194 1.18601 1.13232 0.92238 1.15694 0.92867 1.25494 1.00330 0.95159 0.95286 1.70201 1.32722 1.01498 1.46437 0.86777 0.84300 0.78451 0.79684 1.21539 1.20376 1.20406 0.89264 0.95628 0.92736 0.91969 0.90207 0.85006 0.85248 0.73195 0.91390 0.91136 0.92988 0.94438 0.91068 0.93418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 7.82 37.16 0.29 -2.88 16 2 C 0.18 4.05 3.26 -67.48 -0.22 3.83 16 3 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 4 C 0.10 1.88 5.90 -3.59 -0.02 1.86 16 5 N -0.60 -10.39 2.95 -172.22 -0.51 -10.90 16 6 C 0.51 8.71 7.69 -10.99 -0.08 8.62 16 7 O -0.52 -11.10 13.60 -18.96 -0.26 -11.36 16 8 C -0.14 -1.61 4.64 -29.03 -0.13 -1.75 16 9 C 0.48 6.29 8.32 36.01 0.30 6.59 16 10 O -0.47 -8.45 14.94 -26.86 -0.40 -8.85 16 11 O -0.52 -4.90 13.42 -39.27 -0.53 -5.43 16 12 C 0.09 1.36 5.84 -3.37 -0.02 1.34 16 13 C 0.15 2.93 3.67 -67.25 -0.25 2.68 16 14 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 15 C -0.13 -2.20 8.19 37.16 0.30 -1.89 16 16 N -0.58 -13.07 2.75 -156.76 -0.43 -13.50 16 17 C -0.27 -6.60 6.55 -15.06 -0.10 -6.70 16 18 H 0.05 1.32 7.28 -52.49 -0.38 0.94 16 19 C 0.04 1.02 3.18 -17.43 -0.06 0.97 16 20 N -0.87 -23.56 11.80 55.49 0.65 -22.91 16 21 Si 0.88 19.99 29.61 -169.99 -5.03 14.96 16 22 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 25 H 0.09 2.19 4.95 -51.92 -0.26 1.94 16 26 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 1.21 7.53 -51.93 -0.39 0.82 16 28 H 0.06 1.18 8.12 -51.93 -0.42 0.76 16 29 H 0.08 1.60 7.00 -51.93 -0.36 1.24 16 30 H 0.13 1.29 7.72 -51.93 -0.40 0.89 16 31 H 0.13 1.13 7.91 -51.93 -0.41 0.72 16 32 H 0.41 2.16 9.10 45.56 0.41 2.57 16 33 H 0.07 1.02 8.12 -51.93 -0.42 0.60 16 34 H 0.07 0.80 5.91 -51.93 -0.31 0.49 16 35 H 0.05 0.88 7.67 -51.93 -0.40 0.48 16 36 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 1.42 7.55 -51.93 -0.39 1.03 16 38 H 0.26 6.76 8.32 -40.82 -0.34 6.42 16 LS Contribution 305.20 15.07 4.60 4.60 Total: -1.00 -32.71 305.20 -6.45 -39.16 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -4.56 Total: 1.56 kcal Atomic # 6 Polarization: 12.65 SS G_CDS: 0.01 Total: 12.67 kcal Atomic # 7 Polarization: -47.03 SS G_CDS: -0.28 Total: -47.31 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -1.19 Total: -25.63 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.03 Total: 14.96 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.71 -6.45 -39.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594466652.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.257 kcal (2) G-P(sol) polarization free energy of solvation -32.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds