Wall clock time and date at job start Mon Mar 30 2020 02:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.74810 * 2 1 4 4 C 1.53373 * 109.60645 * 239.57965 * 2 1 3 5 5 N 1.46968 * 108.63521 * 190.83388 * 4 2 1 6 6 C 1.34773 * 120.59376 * 235.20607 * 5 4 2 7 7 O 1.21280 * 119.99731 * 359.97438 * 6 5 4 8 8 C 1.50700 * 120.00052 * 179.97438 * 6 5 4 9 9 C 1.50703 * 109.46867 * 179.97438 * 8 6 5 10 10 O 1.20824 * 120.00355 * 0.02562 * 9 8 6 11 11 O 1.34235 * 119.99410 * 179.97438 * 9 8 6 12 12 C 1.46961 * 118.81250 * 55.21892 * 5 4 2 13 13 C 1.53812 * 108.58238 * 304.65114 * 12 5 4 14 14 H 1.08993 * 109.75699 * 289.94526 * 13 12 5 15 15 C 1.53007 * 109.69520 * 169.28676 * 13 12 5 16 16 N 1.46965 * 109.61036 * 120.43350 * 2 1 3 17 17 C 1.36933 * 120.59255 * 354.94643 * 16 2 1 18 18 H 1.07996 * 120.00138 * 126.96584 * 17 16 2 19 19 C 1.38818 * 119.99948 * 306.95444 * 17 16 2 20 20 N 1.31618 * 119.99773 * 337.42838 * 19 17 16 21 21 Si 1.86799 * 119.99814 * 157.42984 * 19 17 16 22 22 H 1.48496 * 109.46953 * 179.97438 * 21 19 17 23 23 H 1.48497 * 109.46999 * 300.00086 * 21 19 17 24 24 H 1.48496 * 109.47046 * 60.00081 * 21 19 17 25 25 H 1.09010 * 109.46684 * 308.05209 * 1 2 3 26 26 H 1.08995 * 109.47196 * 68.04502 * 1 2 3 27 27 H 1.08995 * 109.47578 * 188.05304 * 1 2 3 28 28 H 1.09004 * 109.60644 * 310.57181 * 4 2 1 29 29 H 1.08994 * 109.61354 * 70.91313 * 4 2 1 30 30 H 1.09000 * 109.46878 * 299.99773 * 8 6 5 31 31 H 1.08994 * 109.47124 * 59.99574 * 8 6 5 32 32 H 0.96706 * 116.99261 * 180.02562 * 11 9 8 33 33 H 1.09003 * 109.61134 * 64.52236 * 12 5 4 34 34 H 1.08995 * 109.61198 * 184.85612 * 12 5 4 35 35 H 1.09003 * 109.47230 * 304.53359 * 15 13 12 36 36 H 1.08997 * 109.47053 * 64.53405 * 15 13 12 37 37 H 1.08999 * 109.46812 * 184.53251 * 15 13 12 38 38 H 0.97001 * 119.99718 * 175.06873 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8983 1.0259 0.0000 4 6 2.0447 -0.7316 -1.2459 5 7 3.4907 -0.9489 -1.0991 6 6 4.3491 -0.5132 -2.0423 7 8 3.9302 0.0636 -3.0235 8 6 5.8294 -0.7428 -1.8779 9 6 6.5619 -0.1645 -3.0612 10 8 5.9452 0.3787 -3.9469 11 8 7.8996 -0.2521 -3.1306 12 6 3.9840 -1.6500 0.0946 13 6 3.4698 -0.9135 1.3432 14 1 3.9731 0.0488 1.4367 15 6 3.7384 -1.7606 2.5887 16 7 2.0233 -0.7013 1.1937 17 6 1.1511 -1.1439 2.1520 18 1 1.1762 -2.1757 2.4699 19 6 0.2348 -0.2662 2.7152 20 7 0.4632 1.0297 2.6893 21 14 -1.3223 -0.9246 3.5098 22 1 -2.1279 0.2079 4.0329 23 1 -2.1149 -1.6721 2.5008 24 1 -0.9616 -1.8328 4.6279 25 1 -0.3633 0.6335 0.8093 26 1 -0.3633 0.3842 -0.9531 27 1 -0.3634 -1.0174 0.1440 28 1 1.5383 -1.6921 -1.3413 29 1 1.8512 -0.1264 -2.1315 30 1 6.1731 -0.2571 -0.9646 31 1 6.0265 -1.8130 -1.8166 32 1 8.3249 0.1339 -3.9086 33 1 3.6157 -2.6760 0.0946 34 1 5.0739 -1.6528 0.0930 35 1 3.2910 -2.7463 2.4612 36 1 4.8138 -1.8654 2.7318 37 1 3.3016 -1.2734 3.4605 38 1 -0.2087 1.6473 3.0180 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594466652.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:08 Heat of formation + Delta-G solvation = -113.485063 kcal Electronic energy + Delta-G solvation = -21964.579170 eV Core-core repulsion = 18614.383925 eV Total energy + Delta-G solvation = -3350.195245 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.68931 -40.52852 -38.82959 -36.94104 -35.87306 -34.42783 -33.40749 -31.79624 -29.48698 -27.59282 -27.28992 -25.46387 -23.33086 -21.99712 -21.42520 -20.00858 -19.21853 -18.17069 -17.76765 -17.32155 -17.24957 -16.70736 -16.45002 -16.22423 -15.86847 -15.38290 -14.85290 -14.73578 -14.18087 -13.94337 -13.59809 -13.35576 -13.26130 -13.10815 -12.92402 -12.59455 -12.50637 -12.43775 -12.31122 -12.21383 -12.11096 -11.75247 -11.61161 -11.56687 -11.38085 -10.69076 -10.15104 -9.61976 -8.38580 -7.66857 -5.57284 1.28070 1.47123 1.52045 1.55791 1.60846 1.70403 2.42766 2.53554 3.24493 3.36486 3.55522 4.16070 4.25508 4.25653 4.26211 4.39884 4.51198 4.54317 4.58588 4.70974 4.82749 4.86978 4.90502 5.00176 5.05894 5.23437 5.43161 5.54468 5.59065 5.69224 5.73790 5.76817 5.85276 6.51040 6.59757 7.04502 7.22791 7.24856 7.81443 8.53891 9.14268 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.035606 B = 0.005114 C = 0.004718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.204717 B = 5473.757890 C = 5933.626980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.184 3.816 3 H -0.008 1.008 4 C 0.109 3.891 5 N -0.601 5.601 6 C 0.500 3.500 7 O -0.566 6.566 8 C -0.127 4.127 9 C 0.482 3.518 10 O -0.528 6.528 11 O -0.506 6.506 12 C 0.098 3.902 13 C 0.142 3.858 14 H 0.010 0.990 15 C -0.118 4.118 16 N -0.591 5.591 17 C -0.260 4.260 18 H 0.055 0.945 19 C 0.001 3.999 20 N -0.907 5.907 21 Si 0.930 3.070 22 H -0.299 1.299 23 H -0.274 1.274 24 H -0.272 1.272 25 H 0.063 0.937 26 H 0.043 0.957 27 H 0.051 0.949 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.164 0.836 31 H 0.175 0.825 32 H 0.429 0.571 33 H 0.080 0.920 34 H 0.123 0.877 35 H 0.055 0.945 36 H 0.080 0.920 37 H 0.034 0.966 38 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.027 -7.507 -4.924 15.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.077 3.923 3 H 0.010 0.990 4 C -0.015 4.015 5 N -0.333 5.333 6 C 0.288 3.712 7 O -0.445 6.445 8 C -0.166 4.166 9 C 0.324 3.676 10 O -0.416 6.416 11 O -0.321 6.321 12 C -0.025 4.025 13 C 0.036 3.964 14 H 0.028 0.972 15 C -0.176 4.176 16 N -0.316 5.316 17 C -0.390 4.390 18 H 0.072 0.928 19 C -0.199 4.199 20 N -0.548 5.548 21 Si 0.757 3.243 22 H -0.226 1.226 23 H -0.200 1.200 24 H -0.197 1.197 25 H 0.082 0.918 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.181 0.819 31 H 0.193 0.807 32 H 0.290 0.710 33 H 0.098 0.902 34 H 0.141 0.859 35 H 0.074 0.926 36 H 0.099 0.901 37 H 0.053 0.947 38 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 12.408 -7.089 -5.210 15.211 hybrid contribution -1.124 0.718 0.000 1.334 sum 11.284 -6.372 -5.210 13.966 Atomic orbital electron populations 1.21874 0.95204 1.02001 1.00395 1.20462 0.93840 0.91996 0.85980 0.99027 1.22085 0.80272 1.00592 0.98580 1.48079 1.06711 1.56913 1.21576 1.20670 0.89350 0.78817 0.82406 1.90810 1.79571 1.42812 1.31281 1.21282 0.89339 1.08033 0.97988 1.22957 0.81166 0.76345 0.87176 1.90879 1.68864 1.41094 1.40756 1.84449 1.20548 1.75752 1.51302 1.22663 1.00760 0.95930 0.83128 1.21217 0.85363 0.95516 0.94272 0.97200 1.21564 1.00844 0.99023 0.96130 1.44237 1.00987 1.67374 1.18969 1.18772 1.13218 0.92074 1.14925 0.92788 1.26004 1.02557 0.95140 0.96175 1.70307 1.33293 1.02580 1.48662 0.85978 0.81666 0.77547 0.79092 1.22584 1.19973 1.19744 0.91832 0.93810 0.92975 0.91174 0.91459 0.81878 0.80741 0.70968 0.90215 0.85872 0.92612 0.90090 0.94722 0.94164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.16 7.82 71.98 0.56 -5.60 16 2 C 0.18 8.34 3.26 45.03 0.15 8.49 16 3 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 4 C 0.11 4.22 5.90 86.42 0.51 4.73 16 5 N -0.60 -19.64 2.95 -817.16 -2.41 -22.05 16 6 C 0.50 16.14 7.69 87.66 0.67 16.82 16 7 O -0.57 -24.36 13.60 20.41 0.28 -24.08 16 8 C -0.13 -2.46 4.64 29.10 0.13 -2.32 16 9 C 0.48 11.36 8.32 71.24 0.59 11.95 16 10 O -0.53 -18.62 14.94 29.72 0.44 -18.18 16 11 O -0.51 -7.50 13.42 -51.46 -0.69 -8.19 16 12 C 0.10 2.59 5.84 86.57 0.51 3.10 16 13 C 0.14 5.14 3.67 45.18 0.17 5.30 16 14 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 15 C -0.12 -3.72 8.19 71.98 0.59 -3.13 16 16 N -0.59 -26.73 2.75 -649.87 -1.79 -28.51 16 17 C -0.26 -12.77 6.55 84.04 0.55 -12.22 16 18 H 0.05 2.64 7.28 -2.91 -0.02 2.62 16 19 C 0.00 0.03 3.18 84.86 0.27 0.30 16 20 N -0.91 -50.79 11.80 21.65 0.26 -50.53 16 21 Si 0.93 41.50 29.61 68.60 2.03 43.53 16 22 H -0.30 -13.74 7.11 99.48 0.71 -13.04 16 23 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 24 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 25 H 0.06 3.23 4.95 -2.38 -0.01 3.22 16 26 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.05 2.32 7.53 -2.39 -0.02 2.30 16 28 H 0.07 2.59 8.12 -2.38 -0.02 2.57 16 29 H 0.07 2.76 7.00 -2.39 -0.02 2.74 16 30 H 0.16 2.23 7.72 -2.39 -0.02 2.21 16 31 H 0.18 1.86 7.91 -2.39 -0.02 1.84 16 32 H 0.43 3.12 9.10 -74.05 -0.67 2.45 16 33 H 0.08 2.00 8.12 -2.39 -0.02 1.98 16 34 H 0.12 1.98 5.91 -2.39 -0.01 1.97 16 35 H 0.05 1.71 7.67 -2.39 -0.02 1.69 16 36 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.03 1.33 7.55 -2.39 -0.02 1.32 16 38 H 0.25 13.72 8.32 -92.71 -0.77 12.95 16 Total: -1.00 -75.81 305.20 3.23 -72.58 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: 0.40 Total: 8.01 kcal Atomic # 6 Polarization: 22.72 SS G_CDS: 4.70 Total: 27.43 kcal Atomic # 7 Polarization: -97.16 SS G_CDS: -3.94 Total: -101.10 kcal Atomic # 8 Polarization: -50.48 SS G_CDS: 0.03 Total: -50.45 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.53 kcal Total: -75.81 3.23 -72.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594466652.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.905 kcal (2) G-P(sol) polarization free energy of solvation -75.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds