Wall clock time and date at job start Mon Mar 30 2020 02:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.62650 * 2 1 4 4 C 1.53240 * 109.78790 * 120.48481 * 2 1 3 5 5 N 1.46951 * 109.35864 * 173.64031 * 4 2 1 6 6 C 1.46892 * 111.04179 * 172.75967 * 5 4 2 7 7 C 1.53000 * 109.47409 * 190.33712 * 6 5 4 8 8 C 1.50697 * 109.47641 * 180.02562 * 7 6 5 9 9 O 1.20826 * 119.99834 * 359.97438 * 8 7 6 10 10 O 1.34227 * 120.00203 * 180.02562 * 8 7 6 11 11 C 1.46900 * 111.23465 * 296.91315 * 5 4 2 12 12 C 1.53241 * 109.36359 * 63.08916 * 11 5 4 13 13 N 1.47075 * 108.51925 * 306.15532 * 12 11 5 14 14 C 1.34780 * 120.87876 * 231.20387 * 13 12 11 15 15 O 1.21695 * 119.99873 * 175.08619 * 14 13 12 16 16 C 1.46372 * 119.99990 * 355.08497 * 14 13 12 17 17 H 1.07993 * 120.00051 * 6.67336 * 16 14 13 18 18 C 1.40055 * 119.99953 * 186.66543 * 16 14 13 19 19 N 1.30676 * 119.99735 * 0.02562 * 18 16 14 20 20 Si 1.86797 * 119.99956 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47163 * 90.00348 * 20 18 16 22 22 H 1.48501 * 109.46955 * 210.00094 * 20 18 16 23 23 H 1.48499 * 109.47185 * 330.00030 * 20 18 16 24 24 H 1.09001 * 109.46812 * 174.21156 * 1 2 3 25 25 H 1.09003 * 109.47577 * 294.21359 * 1 2 3 26 26 H 1.09002 * 109.47295 * 54.21816 * 1 2 3 27 27 H 1.09008 * 109.49210 * 293.59605 * 4 2 1 28 28 H 1.09001 * 109.49667 * 53.65070 * 4 2 1 29 29 H 1.09002 * 109.47100 * 310.33223 * 6 5 4 30 30 H 1.08998 * 109.47448 * 70.33530 * 6 5 4 31 31 H 1.09003 * 109.47324 * 299.99907 * 7 6 5 32 32 H 1.09008 * 109.47084 * 59.99647 * 7 6 5 33 33 H 0.96701 * 116.99779 * 179.97438 * 10 8 7 34 34 H 1.09000 * 109.49548 * 303.11437 * 11 5 4 35 35 H 1.09007 * 109.49368 * 183.05699 * 11 5 4 36 36 H 1.09003 * 109.62757 * 65.86338 * 12 11 5 37 37 H 1.08998 * 109.62986 * 186.44342 * 12 11 5 38 38 H 0.96992 * 119.99735 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8960 1.0267 0.0000 4 6 2.0487 -0.7315 1.2426 5 7 3.5102 -0.8597 1.1577 6 6 4.0655 -1.4009 2.4053 7 6 5.5905 -1.2801 2.3794 8 6 6.1603 -1.8358 3.6591 9 8 5.4223 -2.2823 4.5052 10 8 7.4875 -1.8339 3.8593 11 6 3.9062 -1.6805 0.0055 12 6 3.4636 -0.9879 -1.2878 13 7 2.0241 -0.7008 -1.1949 14 6 1.1802 -1.0705 -2.1786 15 8 -0.0183 -0.9056 -2.0461 16 6 1.7050 -1.6702 -3.4063 17 1 2.7540 -1.9157 -3.4817 18 6 0.8469 -1.9257 -4.4833 19 7 -0.4223 -1.6282 -4.3922 20 14 1.5166 -2.6917 -6.0498 21 1 1.4316 -4.1711 -5.9530 22 1 0.7164 -2.2248 -7.2104 23 1 2.9341 -2.2881 -6.2314 24 1 -0.3633 -1.0225 -0.1036 25 1 -0.3634 0.4215 0.9373 26 1 -0.3634 0.6009 -0.8337 27 1 1.7848 -0.1643 2.1353 28 1 1.5988 -1.7229 1.2954 29 1 3.6709 -0.8395 3.2522 30 1 3.7858 -2.4499 2.5026 31 1 5.9852 -1.8414 1.5325 32 1 5.8702 -0.2310 2.2821 33 1 7.8059 -2.2005 4.6956 34 1 3.4308 -2.6589 0.0753 35 1 4.9895 -1.8020 0.0006 36 1 4.0156 -0.0562 -1.4116 37 1 3.6520 -1.6441 -2.1375 38 1 -1.0167 -1.8055 -5.1379 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594516686.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:21 Heat of formation + Delta-G solvation = -105.190245 kcal Electronic energy + Delta-G solvation = -21290.877659 eV Core-core repulsion = 17941.042104 eV Total energy + Delta-G solvation = -3349.835555 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.49519 -39.14701 -36.94690 -36.30111 -33.99285 -32.70311 -31.91875 -30.97329 -27.76486 -25.94628 -25.57861 -23.41676 -22.08090 -21.05389 -20.30300 -18.72620 -18.33099 -16.93220 -16.52159 -16.27370 -15.59218 -14.88060 -14.83706 -14.54550 -14.41491 -14.03990 -13.79425 -13.26513 -13.16187 -12.64105 -12.21125 -11.84651 -11.77496 -11.54443 -11.38846 -11.28057 -11.16514 -10.95985 -10.91283 -10.86195 -10.71532 -10.50556 -10.29537 -10.22093 -9.90033 -8.86879 -8.25499 -7.16860 -7.13326 -6.15118 -4.65379 1.98502 2.75610 3.12127 3.19512 3.22056 4.03037 4.12033 4.50952 4.56473 4.62674 4.83150 5.14335 5.30493 5.37978 5.49345 5.56462 5.67775 5.72461 5.83030 5.83905 5.88056 5.99888 6.18792 6.24936 6.32327 6.37496 6.53169 6.59387 7.04713 7.17231 7.21584 7.40541 7.44151 7.64600 7.65637 8.14651 8.36120 9.01388 9.44667 10.56941 10.75910 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.027553 B = 0.004351 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.997273 B = 6433.163002 C = 7233.235247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.157 3.843 3 H 0.053 0.947 4 C 0.050 3.950 5 N -0.537 5.537 6 C 0.066 3.934 7 C -0.112 4.112 8 C 0.481 3.519 9 O -0.518 6.518 10 O -0.519 6.519 11 C 0.035 3.965 12 C 0.128 3.872 13 N -0.641 5.641 14 C 0.560 3.440 15 O -0.567 6.567 16 C -0.546 4.546 17 H 0.071 0.929 18 C 0.089 3.911 19 N -0.768 5.768 20 Si 0.905 3.095 21 H -0.273 1.273 22 H -0.280 1.280 23 H -0.265 1.265 24 H 0.069 0.931 25 H 0.017 0.983 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.037 0.963 29 H 0.081 0.919 30 H 0.041 0.959 31 H 0.108 0.892 32 H 0.116 0.884 33 H 0.409 0.591 34 H 0.037 0.963 35 H 0.075 0.925 36 H 0.050 0.950 37 H 0.095 0.905 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.041 0.391 11.105 17.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.052 3.948 3 H 0.071 0.929 4 C -0.079 4.079 5 N -0.262 5.262 6 C -0.062 4.062 7 C -0.149 4.149 8 C 0.323 3.677 9 O -0.407 6.407 10 O -0.330 6.330 11 C -0.094 4.094 12 C 0.003 3.997 13 N -0.380 5.380 14 C 0.366 3.634 15 O -0.450 6.450 16 C -0.583 4.583 17 H 0.089 0.911 18 C -0.131 4.131 19 N -0.397 5.397 20 Si 0.730 3.270 21 H -0.198 1.198 22 H -0.205 1.205 23 H -0.189 1.189 24 H 0.088 0.912 25 H 0.035 0.965 26 H 0.095 0.905 27 H 0.092 0.908 28 H 0.055 0.945 29 H 0.100 0.900 30 H 0.059 0.941 31 H 0.126 0.874 32 H 0.134 0.866 33 H 0.267 0.733 34 H 0.056 0.944 35 H 0.094 0.906 36 H 0.069 0.931 37 H 0.113 0.887 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 12.006 0.996 10.859 16.219 hybrid contribution 0.465 -1.494 0.005 1.565 sum 12.471 -0.498 10.864 16.547 Atomic orbital electron populations 1.22070 0.92827 1.04208 0.98774 1.20926 0.95161 0.94410 0.84284 0.92873 1.22626 0.85869 0.99975 0.99433 1.61917 1.11584 1.50597 1.02110 1.21830 0.91690 0.99318 0.93399 1.21372 0.96653 1.04315 0.92606 1.23589 0.79813 0.75098 0.89153 1.90735 1.60244 1.43744 1.45940 1.84552 1.25498 1.77536 1.45459 1.22696 0.99792 0.95189 0.91727 1.21482 0.83239 0.99240 0.95721 1.48294 1.06676 1.62725 1.20303 1.18178 0.85137 0.78055 0.82065 1.90625 1.15286 1.59385 1.79728 1.21010 0.95725 1.43493 0.98059 0.91116 1.25698 0.94323 0.93683 0.99357 1.69999 1.03743 1.35572 1.30384 0.86419 0.79699 0.79670 0.81260 1.19811 1.20483 1.18890 0.91194 0.96462 0.90495 0.90802 0.94512 0.90030 0.94051 0.87400 0.86600 0.73283 0.94450 0.90649 0.93130 0.88692 0.92127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.56 7.62 37.15 0.28 -2.28 16 2 C 0.16 3.09 3.64 -67.49 -0.25 2.84 16 3 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 4 C 0.05 0.81 4.92 -3.67 -0.02 0.79 16 5 N -0.54 -7.76 4.63 -234.27 -1.08 -8.85 16 6 C 0.07 0.80 4.25 -3.83 -0.02 0.79 16 7 C -0.11 -1.06 5.75 -27.88 -0.16 -1.22 16 8 C 0.48 4.86 8.33 36.00 0.30 5.16 16 9 O -0.52 -6.94 16.74 -18.75 -0.31 -7.26 16 10 O -0.52 -3.94 13.42 -39.25 -0.53 -4.47 16 11 C 0.03 0.52 5.46 -3.70 -0.02 0.50 16 12 C 0.13 2.32 6.47 -3.60 -0.02 2.29 16 13 N -0.64 -14.29 3.01 -166.58 -0.50 -14.79 16 14 C 0.56 15.36 7.53 -12.99 -0.10 15.26 16 15 O -0.57 -17.22 10.55 5.19 0.05 -17.17 16 16 C -0.55 -14.88 8.86 -35.63 -0.32 -15.19 16 17 H 0.07 1.75 5.73 -52.49 -0.30 1.45 16 18 C 0.09 2.42 5.50 -17.36 -0.10 2.32 16 19 N -0.77 -22.45 11.85 55.55 0.66 -21.79 16 20 Si 0.90 19.68 29.56 -169.99 -5.02 14.65 16 21 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 22 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 23 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 24 H 0.07 1.67 6.78 -51.93 -0.35 1.32 16 25 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.08 1.85 6.76 -51.93 -0.35 1.50 16 27 H 0.07 1.06 7.99 -51.92 -0.41 0.65 16 28 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.08 0.99 7.92 -51.93 -0.41 0.58 16 30 H 0.04 0.55 8.08 -51.93 -0.42 0.13 16 31 H 0.11 0.92 6.41 -51.93 -0.33 0.59 16 32 H 0.12 0.98 8.14 -51.92 -0.42 0.56 16 33 H 0.41 1.42 9.10 45.56 0.41 1.84 16 34 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.88 6.18 -51.93 -0.32 0.56 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.10 1.78 5.45 -51.93 -0.28 1.49 16 38 H 0.27 7.15 8.29 -40.82 -0.34 6.81 16 LS Contribution 306.98 15.07 4.63 4.63 Total: -1.00 -34.14 306.98 -6.96 -41.11 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -4.44 Total: 2.65 kcal Atomic # 6 Polarization: 11.69 SS G_CDS: -0.41 Total: 11.28 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: -0.93 Total: -45.42 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -0.79 Total: -28.89 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.65 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -34.14 -6.96 -41.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594516686.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.083 kcal (2) G-P(sol) polarization free energy of solvation -34.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds