Wall clock time and date at job start Mon Mar 30 2020 02:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.62650 * 2 1 4 4 C 1.53240 * 109.78790 * 120.48481 * 2 1 3 5 5 N 1.46951 * 109.35864 * 173.64031 * 4 2 1 6 6 C 1.46892 * 111.04179 * 172.75967 * 5 4 2 7 7 C 1.53000 * 109.47409 * 190.33712 * 6 5 4 8 8 C 1.50697 * 109.47641 * 180.02562 * 7 6 5 9 9 O 1.20826 * 119.99834 * 359.97438 * 8 7 6 10 10 O 1.34227 * 120.00203 * 180.02562 * 8 7 6 11 11 C 1.46900 * 111.23465 * 296.91315 * 5 4 2 12 12 C 1.53241 * 109.36359 * 63.08916 * 11 5 4 13 13 N 1.47075 * 108.51925 * 306.15532 * 12 11 5 14 14 C 1.34780 * 120.87876 * 231.20387 * 13 12 11 15 15 O 1.21695 * 119.99873 * 175.08619 * 14 13 12 16 16 C 1.46372 * 119.99990 * 355.08497 * 14 13 12 17 17 H 1.07993 * 120.00051 * 6.67336 * 16 14 13 18 18 C 1.40055 * 119.99953 * 186.66543 * 16 14 13 19 19 N 1.30676 * 119.99735 * 0.02562 * 18 16 14 20 20 Si 1.86797 * 119.99956 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47163 * 90.00348 * 20 18 16 22 22 H 1.48501 * 109.46955 * 210.00094 * 20 18 16 23 23 H 1.48499 * 109.47185 * 330.00030 * 20 18 16 24 24 H 1.09001 * 109.46812 * 174.21156 * 1 2 3 25 25 H 1.09003 * 109.47577 * 294.21359 * 1 2 3 26 26 H 1.09002 * 109.47295 * 54.21816 * 1 2 3 27 27 H 1.09008 * 109.49210 * 293.59605 * 4 2 1 28 28 H 1.09001 * 109.49667 * 53.65070 * 4 2 1 29 29 H 1.09002 * 109.47100 * 310.33223 * 6 5 4 30 30 H 1.08998 * 109.47448 * 70.33530 * 6 5 4 31 31 H 1.09003 * 109.47324 * 299.99907 * 7 6 5 32 32 H 1.09008 * 109.47084 * 59.99647 * 7 6 5 33 33 H 0.96701 * 116.99779 * 179.97438 * 10 8 7 34 34 H 1.09000 * 109.49548 * 303.11437 * 11 5 4 35 35 H 1.09007 * 109.49368 * 183.05699 * 11 5 4 36 36 H 1.09003 * 109.62757 * 65.86338 * 12 11 5 37 37 H 1.08998 * 109.62986 * 186.44342 * 12 11 5 38 38 H 0.96992 * 119.99735 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8960 1.0267 0.0000 4 6 2.0487 -0.7315 1.2426 5 7 3.5102 -0.8597 1.1577 6 6 4.0655 -1.4009 2.4053 7 6 5.5905 -1.2801 2.3794 8 6 6.1603 -1.8358 3.6591 9 8 5.4223 -2.2823 4.5052 10 8 7.4875 -1.8339 3.8593 11 6 3.9062 -1.6805 0.0055 12 6 3.4636 -0.9879 -1.2878 13 7 2.0241 -0.7008 -1.1949 14 6 1.1802 -1.0705 -2.1786 15 8 -0.0183 -0.9056 -2.0461 16 6 1.7050 -1.6702 -3.4063 17 1 2.7540 -1.9157 -3.4817 18 6 0.8469 -1.9257 -4.4833 19 7 -0.4223 -1.6282 -4.3922 20 14 1.5166 -2.6917 -6.0498 21 1 1.4316 -4.1711 -5.9530 22 1 0.7164 -2.2248 -7.2104 23 1 2.9341 -2.2881 -6.2314 24 1 -0.3633 -1.0225 -0.1036 25 1 -0.3634 0.4215 0.9373 26 1 -0.3634 0.6009 -0.8337 27 1 1.7848 -0.1643 2.1353 28 1 1.5988 -1.7229 1.2954 29 1 3.6709 -0.8395 3.2522 30 1 3.7858 -2.4499 2.5026 31 1 5.9852 -1.8414 1.5325 32 1 5.8702 -0.2310 2.2821 33 1 7.8059 -2.2005 4.6956 34 1 3.4308 -2.6589 0.0753 35 1 4.9895 -1.8020 0.0006 36 1 4.0156 -0.0562 -1.4116 37 1 3.6520 -1.6441 -2.1375 38 1 -1.0167 -1.8055 -5.1379 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594516686.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:21 Heat of formation + Delta-G solvation = -131.905482 kcal Electronic energy + Delta-G solvation = -21292.036119 eV Core-core repulsion = 17941.042104 eV Total energy + Delta-G solvation = -3350.994015 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.30776 -40.66820 -38.49906 -37.10325 -35.59084 -34.65051 -33.55436 -32.10661 -29.33845 -27.91521 -26.86612 -24.62710 -23.50010 -22.52759 -21.31041 -20.47057 -19.09140 -18.34851 -17.75745 -17.42710 -17.16505 -16.46630 -16.24147 -15.91990 -15.69182 -15.46694 -15.32441 -14.53963 -14.36048 -14.04815 -13.46077 -13.38687 -13.12720 -13.06384 -12.96702 -12.72018 -12.58219 -12.52403 -12.40011 -12.22824 -12.05567 -11.94054 -11.79813 -11.61945 -11.53892 -10.89036 -9.50432 -9.23251 -8.90195 -8.18364 -6.77805 1.23873 1.41490 1.42348 1.57068 2.04300 2.25732 2.51910 2.79829 3.05426 3.66284 3.75189 3.96048 4.02711 4.08329 4.30872 4.35665 4.43335 4.48426 4.55204 4.65118 4.74123 4.77270 4.84528 4.89925 4.91973 4.99759 5.13770 5.36086 5.42372 5.62077 5.65357 5.77362 5.96744 6.02492 6.21400 6.49234 6.93565 7.02786 7.50923 8.54729 8.73593 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.027553 B = 0.004351 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.997273 B = 6433.163002 C = 7233.235247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.152 3.848 3 H 0.065 0.935 4 C 0.060 3.940 5 N -0.531 5.531 6 C 0.069 3.931 7 C -0.106 4.106 8 C 0.490 3.510 9 O -0.558 6.558 10 O -0.511 6.511 11 C 0.043 3.957 12 C 0.122 3.878 13 N -0.646 5.646 14 C 0.540 3.460 15 O -0.611 6.611 16 C -0.572 4.572 17 H 0.091 0.909 18 C 0.031 3.969 19 N -0.823 5.823 20 Si 0.991 3.009 21 H -0.265 1.265 22 H -0.276 1.276 23 H -0.246 1.246 24 H 0.032 0.968 25 H 0.055 0.945 26 H 0.037 0.963 27 H 0.100 0.900 28 H 0.016 0.984 29 H 0.083 0.917 30 H 0.028 0.972 31 H 0.124 0.876 32 H 0.134 0.866 33 H 0.427 0.573 34 H 0.019 0.981 35 H 0.118 0.882 36 H 0.067 0.933 37 H 0.086 0.914 38 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.284 0.359 11.522 19.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.048 3.952 3 H 0.083 0.917 4 C -0.069 4.069 5 N -0.256 5.256 6 C -0.059 4.059 7 C -0.143 4.143 8 C 0.334 3.666 9 O -0.449 6.449 10 O -0.325 6.325 11 C -0.086 4.086 12 C -0.001 4.001 13 N -0.384 5.384 14 C 0.346 3.654 15 O -0.498 6.498 16 C -0.608 4.608 17 H 0.109 0.891 18 C -0.183 4.183 19 N -0.453 5.453 20 Si 0.811 3.189 21 H -0.190 1.190 22 H -0.201 1.201 23 H -0.169 1.169 24 H 0.051 0.949 25 H 0.074 0.926 26 H 0.056 0.944 27 H 0.118 0.882 28 H 0.034 0.966 29 H 0.101 0.899 30 H 0.047 0.953 31 H 0.142 0.858 32 H 0.152 0.848 33 H 0.289 0.711 34 H 0.037 0.963 35 H 0.136 0.864 36 H 0.085 0.915 37 H 0.104 0.896 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 15.336 0.973 11.324 19.089 hybrid contribution -0.492 -1.433 -0.014 1.516 sum 14.844 -0.460 11.311 18.668 Atomic orbital electron populations 1.21764 0.94386 1.01275 0.99028 1.21066 0.94026 0.95260 0.84848 0.91718 1.22434 0.87284 0.98728 0.98442 1.61915 1.09994 1.50612 1.03038 1.21808 0.93715 0.98362 0.91972 1.21308 0.94377 1.05708 0.92919 1.23598 0.80221 0.74095 0.88709 1.90737 1.61273 1.45642 1.47273 1.84502 1.23987 1.77181 1.46820 1.22637 1.02053 0.93647 0.90248 1.21689 0.80802 1.00200 0.97422 1.48204 1.08114 1.62033 1.20036 1.18571 0.85214 0.78201 0.83414 1.90606 1.17248 1.60968 1.80953 1.21545 0.96959 1.43776 0.98532 0.89092 1.26900 0.94319 0.93654 1.03457 1.70179 1.05734 1.37441 1.31978 0.85114 0.79609 0.78558 0.75630 1.19021 1.20132 1.16921 0.94898 0.92629 0.94357 0.88159 0.96595 0.89866 0.95344 0.85825 0.84782 0.71091 0.96292 0.86406 0.91479 0.89590 0.91853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.68 7.62 71.98 0.55 -4.13 16 2 C 0.15 5.96 3.64 44.96 0.16 6.13 16 3 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 4 C 0.06 1.89 4.92 86.37 0.43 2.32 16 5 N -0.53 -13.95 4.63 -895.11 -4.14 -18.10 16 6 C 0.07 1.50 4.25 86.30 0.37 1.87 16 7 C -0.11 -1.60 5.75 29.85 0.17 -1.43 16 8 C 0.49 8.45 8.33 71.23 0.59 9.04 16 9 O -0.56 -13.91 16.74 21.96 0.37 -13.54 16 10 O -0.51 -6.01 13.42 -51.39 -0.69 -6.70 16 11 C 0.04 1.17 5.46 86.38 0.47 1.64 16 12 C 0.12 4.25 6.47 86.35 0.56 4.81 16 13 N -0.65 -29.13 3.01 -799.15 -2.40 -31.53 16 14 C 0.54 30.80 7.53 86.36 0.65 31.45 16 15 O -0.61 -39.33 10.55 -4.33 -0.05 -39.38 16 16 C -0.57 -31.70 8.86 24.83 0.22 -31.48 16 17 H 0.09 4.49 5.73 -2.91 -0.02 4.47 16 18 C 0.03 1.73 5.50 85.31 0.47 2.20 16 19 N -0.82 -50.03 11.85 21.84 0.26 -49.77 16 20 Si 0.99 40.50 29.56 68.60 2.03 42.53 16 21 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 22 H -0.28 -11.03 7.11 99.48 0.71 -10.32 16 23 H -0.25 -9.22 7.11 99.48 0.71 -8.51 16 24 H 0.03 1.65 6.78 -2.39 -0.02 1.63 16 25 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.04 1.94 6.76 -2.39 -0.02 1.92 16 27 H 0.10 2.64 7.99 -2.38 -0.02 2.62 16 28 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.08 1.81 7.92 -2.39 -0.02 1.79 16 30 H 0.03 0.70 8.08 -2.39 -0.02 0.68 16 31 H 0.12 1.52 6.41 -2.39 -0.02 1.50 16 32 H 0.13 1.64 8.14 -2.38 -0.02 1.62 16 33 H 0.43 1.64 9.10 -74.06 -0.67 0.97 16 34 H 0.02 0.59 8.14 -2.39 -0.02 0.58 16 35 H 0.12 2.25 6.18 -2.38 -0.01 2.24 16 36 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.09 3.13 5.45 -2.39 -0.01 3.11 16 38 H 0.27 15.07 8.29 -92.71 -0.77 14.30 16 Total: -1.00 -78.68 306.98 0.42 -78.26 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: 0.41 Total: 15.81 kcal Atomic # 6 Polarization: 17.78 SS G_CDS: 4.64 Total: 22.42 kcal Atomic # 7 Polarization: -93.11 SS G_CDS: -6.29 Total: -99.40 kcal Atomic # 8 Polarization: -59.25 SS G_CDS: -0.37 Total: -59.62 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.53 kcal Total: -78.68 0.42 -78.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594516686.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.648 kcal (2) G-P(sol) polarization free energy of solvation -78.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds