Wall clock time and date at job start Mon Mar 30 2020 02:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46907 * 109.46727 * 2 1 4 4 C 1.47482 * 110.99985 * 265.97042 * 3 2 1 5 5 C 1.53507 * 87.93423 * 221.29839 * 4 3 2 6 6 C 1.47476 * 110.99642 * 170.00281 * 3 2 1 7 7 H 1.08995 * 113.48045 * 23.87034 * 6 3 2 8 8 C 1.50709 * 113.47455 * 253.46764 * 6 3 2 9 9 O 1.21294 * 119.99463 * 359.97438 * 8 6 3 10 10 N 1.34775 * 120.00167 * 180.02562 * 8 6 3 11 11 C 1.37094 * 119.99735 * 359.97438 * 10 8 6 12 12 H 1.08003 * 120.00083 * 33.89667 * 11 10 8 13 13 C 1.38951 * 120.00023 * 213.89127 * 11 10 8 14 14 N 1.31416 * 119.99686 * 22.62642 * 13 11 10 15 15 Si 1.86796 * 120.00215 * 202.62071 * 13 11 10 16 16 H 1.48499 * 109.47431 * 180.02562 * 15 13 11 17 17 H 1.48498 * 109.47257 * 300.00416 * 15 13 11 18 18 H 1.48503 * 109.47288 * 60.00163 * 15 13 11 19 19 C 1.46494 * 120.00068 * 180.02562 * 10 8 6 20 20 C 1.53008 * 109.46906 * 274.47968 * 19 10 8 21 21 C 1.50700 * 109.47258 * 179.97438 * 20 19 10 22 22 O 1.20826 * 119.99960 * 0.02562 * 21 20 19 23 23 O 1.34225 * 119.99882 * 179.97438 * 21 20 19 24 24 H 1.08995 * 109.47571 * 300.00028 * 1 2 3 25 25 H 1.08997 * 109.47512 * 60.00564 * 1 2 3 26 26 H 1.09008 * 109.46963 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47250 * 240.00079 * 2 1 3 28 28 H 1.08997 * 109.47512 * 119.99436 * 2 1 3 29 29 H 1.09005 * 113.47274 * 336.06822 * 4 3 2 30 30 H 1.09005 * 113.47546 * 106.52904 * 4 3 2 31 31 H 1.08996 * 114.17219 * 272.38138 * 5 4 3 32 32 H 1.08996 * 114.17198 * 139.66912 * 5 4 3 33 33 H 0.97001 * 119.99579 * 179.97438 * 14 13 11 34 34 H 1.09007 * 109.47349 * 34.47664 * 19 10 8 35 35 H 1.08991 * 109.47502 * 154.48372 * 19 10 8 36 36 H 1.08999 * 109.47102 * 300.00252 * 20 19 10 37 37 H 1.09000 * 109.46645 * 60.00207 * 20 19 10 38 38 H 0.96706 * 116.99670 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0195 1.3851 0.0000 4 6 2.2869 1.8511 -1.3735 5 6 3.5603 2.5212 -0.8388 6 6 3.4741 1.4314 0.2390 7 1 3.9883 0.5094 -0.0321 8 6 3.8408 1.9194 1.6169 9 8 2.9698 2.2280 2.4027 10 7 5.1365 2.0140 1.9757 11 6 6.1208 1.6657 1.0873 12 1 5.9819 1.8421 0.0309 13 6 7.2973 1.0858 1.5461 14 7 7.3170 0.4695 2.7066 15 14 8.8508 1.1823 0.5133 16 1 9.9588 0.4909 1.2200 17 1 8.6150 0.5263 -0.7979 18 1 9.2134 2.6059 0.2963 19 6 5.4929 2.4878 3.3153 20 6 5.5442 4.0171 3.3184 21 6 5.9102 4.5046 4.6966 22 8 6.1101 3.7105 5.5850 23 8 6.0152 5.8210 4.9368 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 2.4844 1.0414 -2.0760 30 1 1.5459 2.5598 -1.7435 31 1 3.4083 3.5331 -0.4634 32 1 4.4234 2.4295 -1.4981 33 1 8.1382 0.0644 3.0266 34 1 4.7451 2.1479 4.0319 35 1 6.4692 2.0911 3.5932 36 1 6.2919 4.3570 2.6018 37 1 4.5677 4.4138 3.0405 38 1 6.2519 6.0856 5.8363 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001596415457.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:42 Heat of formation + Delta-G solvation = -85.562873 kcal Electronic energy + Delta-G solvation = -21594.250513 eV Core-core repulsion = 18245.266065 eV Total energy + Delta-G solvation = -3348.984448 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.12549 -39.72940 -37.70294 -35.75174 -34.81105 -32.44982 -31.94269 -30.59665 -26.90550 -26.48502 -25.18525 -23.52005 -21.74728 -20.73806 -19.79932 -18.89245 -17.75677 -17.06599 -16.33635 -15.91196 -15.59506 -15.38008 -14.76778 -14.61824 -14.35536 -13.61301 -13.35261 -13.06052 -12.72569 -12.53214 -12.26945 -12.18525 -11.91566 -11.76526 -11.29823 -11.14456 -11.11784 -11.05551 -10.83323 -10.61389 -10.48037 -10.44297 -10.22655 -10.10329 -10.02829 -9.14926 -8.68019 -8.13171 -7.61761 -6.43035 -4.10849 2.69667 3.07022 3.18008 3.18360 3.44248 3.77753 4.07674 4.28135 4.85145 4.90091 5.06308 5.22657 5.33875 5.49443 5.62375 5.65623 5.77320 5.83633 5.88025 5.91704 5.99552 6.04500 6.20139 6.21894 6.29360 6.37526 6.39903 6.56889 6.74008 6.85157 6.93249 7.30375 7.42802 7.50650 7.83479 8.30137 8.34609 9.02936 9.48738 9.91010 10.58226 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.013891 B = 0.007194 C = 0.005414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.146365 B = 3891.045092 C = 5170.432966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.016 3.984 3 N -0.448 5.448 4 C -0.006 4.006 5 C -0.125 4.125 6 C 0.032 3.968 7 H 0.096 0.904 8 C 0.485 3.515 9 O -0.583 6.583 10 N -0.440 5.440 11 C -0.347 4.347 12 H 0.093 0.907 13 C 0.043 3.957 14 N -0.851 5.851 15 Si 0.911 3.089 16 H -0.284 1.284 17 H -0.272 1.272 18 H -0.272 1.272 19 C 0.127 3.873 20 C -0.125 4.125 21 C 0.483 3.517 22 O -0.514 6.514 23 O -0.525 6.525 24 H 0.062 0.938 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.039 0.961 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.272 0.728 34 H 0.062 0.938 35 H 0.118 0.882 36 H 0.103 0.897 37 H 0.098 0.902 38 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.079 3.821 -5.640 7.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.113 4.113 3 N -0.171 5.171 4 C -0.135 4.135 5 C -0.164 4.164 6 C -0.080 4.080 7 H 0.114 0.886 8 C 0.273 3.727 9 O -0.466 6.466 10 N -0.159 5.159 11 C -0.474 4.474 12 H 0.110 0.890 13 C -0.164 4.164 14 N -0.487 5.487 15 Si 0.737 3.263 16 H -0.209 1.209 17 H -0.197 1.197 18 H -0.197 1.197 19 C 0.003 3.997 20 C -0.164 4.164 21 C 0.325 3.675 22 O -0.402 6.402 23 O -0.336 6.336 24 H 0.081 0.919 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.058 0.942 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.099 0.901 31 H 0.109 0.891 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.135 0.865 36 H 0.121 0.879 37 H 0.116 0.884 38 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -3.909 3.818 -4.814 7.282 hybrid contribution 1.644 -0.464 -0.376 1.749 sum -2.265 3.354 -5.190 6.582 Atomic orbital electron populations 1.21616 0.94968 1.00670 1.02255 1.22621 0.96714 0.90981 1.00970 1.68806 1.14092 1.19181 1.14974 1.23856 0.97831 0.99646 0.92140 1.23012 0.97408 0.98932 0.97003 1.23097 0.89623 0.99896 0.95409 0.88598 1.19986 0.82877 0.81489 0.88368 1.90544 1.48835 1.54004 1.53257 1.43375 1.03893 1.56060 1.12603 1.19404 0.96197 1.41135 0.90669 0.88969 1.25363 1.00104 0.94154 0.96762 1.69939 1.28379 1.29822 1.20522 0.86260 0.81337 0.78786 0.79903 1.20905 1.19718 1.19710 1.21176 1.05088 0.87798 0.85624 1.21878 1.04032 1.00665 0.89825 1.23809 0.72414 0.79243 0.92020 1.90701 1.46290 1.55932 1.47271 1.84595 1.82839 1.27676 1.38531 0.91881 0.93177 0.92975 0.94233 0.90944 0.91711 0.90113 0.89114 0.90215 0.91768 0.91928 0.86460 0.87864 0.88393 0.74187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 10.24 37.16 0.38 -1.50 16 2 C 0.02 0.26 5.54 -3.82 -0.02 0.23 16 3 N -0.45 -8.13 5.76 -237.93 -1.37 -9.50 16 4 C -0.01 -0.08 7.71 -7.56 -0.06 -0.14 16 5 C -0.13 -2.04 7.38 -26.20 -0.19 -2.23 16 6 C 0.03 0.63 2.22 -72.59 -0.16 0.47 16 7 H 0.10 1.91 7.66 -51.93 -0.40 1.51 16 8 C 0.48 11.61 7.18 -10.98 -0.08 11.53 16 9 O -0.58 -15.57 16.32 5.55 0.09 -15.48 16 10 N -0.44 -10.67 2.55 -114.81 -0.29 -10.96 16 11 C -0.35 -8.25 8.56 -14.93 -0.13 -8.38 16 12 H 0.09 2.05 6.46 -52.48 -0.34 1.71 16 13 C 0.04 1.04 4.92 -17.47 -0.09 0.96 16 14 N -0.85 -22.13 11.34 55.50 0.63 -21.50 16 15 Si 0.91 18.61 29.61 -169.99 -5.03 13.57 16 16 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 17 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 18 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 19 C 0.13 3.06 4.21 -4.04 -0.02 3.04 16 20 C -0.13 -2.49 6.11 -27.88 -0.17 -2.66 16 21 C 0.48 9.03 8.33 36.01 0.30 9.33 16 22 O -0.51 -11.16 16.74 -18.75 -0.31 -11.47 16 23 O -0.52 -7.65 13.42 -39.24 -0.53 -8.18 16 24 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.61 8.14 -51.92 -0.42 0.18 16 27 H 0.04 0.56 7.30 -51.93 -0.38 0.18 16 28 H 0.07 1.29 8.08 -51.93 -0.42 0.87 16 29 H 0.06 0.83 7.42 -51.93 -0.39 0.45 16 30 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.09 1.53 8.11 -51.93 -0.42 1.11 16 32 H 0.08 1.16 7.82 -51.93 -0.41 0.76 16 33 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 34 H 0.06 1.63 7.52 -51.93 -0.39 1.24 16 35 H 0.12 3.05 5.30 -51.93 -0.28 2.77 16 36 H 0.10 1.94 8.14 -51.93 -0.42 1.51 16 37 H 0.10 1.94 8.14 -51.93 -0.42 1.52 16 38 H 0.40 3.88 9.10 45.56 0.41 4.30 16 LS Contribution 321.39 15.07 4.84 4.84 Total: -1.00 -30.87 321.39 -6.88 -37.74 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -4.67 Total: 10.28 kcal Atomic # 6 Polarization: 10.89 SS G_CDS: -0.23 Total: 10.65 kcal Atomic # 7 Polarization: -40.93 SS G_CDS: -1.03 Total: -41.96 kcal Atomic # 8 Polarization: -34.38 SS G_CDS: -0.75 Total: -35.13 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.57 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.87 -6.88 -37.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596415457.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.819 kcal (2) G-P(sol) polarization free energy of solvation -30.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds