Wall clock time and date at job start Mon Mar 30 2020 02:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46907 * 109.46727 * 2 1 4 4 C 1.47482 * 110.99985 * 265.97042 * 3 2 1 5 5 C 1.53507 * 87.93423 * 221.29839 * 4 3 2 6 6 C 1.47476 * 110.99642 * 170.00281 * 3 2 1 7 7 H 1.08995 * 113.48045 * 23.87034 * 6 3 2 8 8 C 1.50709 * 113.47455 * 253.46764 * 6 3 2 9 9 O 1.21294 * 119.99463 * 359.97438 * 8 6 3 10 10 N 1.34775 * 120.00167 * 180.02562 * 8 6 3 11 11 C 1.37094 * 119.99735 * 359.97438 * 10 8 6 12 12 H 1.08003 * 120.00083 * 33.89667 * 11 10 8 13 13 C 1.38951 * 120.00023 * 213.89127 * 11 10 8 14 14 N 1.31416 * 119.99686 * 22.62642 * 13 11 10 15 15 Si 1.86796 * 120.00215 * 202.62071 * 13 11 10 16 16 H 1.48499 * 109.47431 * 180.02562 * 15 13 11 17 17 H 1.48498 * 109.47257 * 300.00416 * 15 13 11 18 18 H 1.48503 * 109.47288 * 60.00163 * 15 13 11 19 19 C 1.46494 * 120.00068 * 180.02562 * 10 8 6 20 20 C 1.53008 * 109.46906 * 274.47968 * 19 10 8 21 21 C 1.50700 * 109.47258 * 179.97438 * 20 19 10 22 22 O 1.20826 * 119.99960 * 0.02562 * 21 20 19 23 23 O 1.34225 * 119.99882 * 179.97438 * 21 20 19 24 24 H 1.08995 * 109.47571 * 300.00028 * 1 2 3 25 25 H 1.08997 * 109.47512 * 60.00564 * 1 2 3 26 26 H 1.09008 * 109.46963 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47250 * 240.00079 * 2 1 3 28 28 H 1.08997 * 109.47512 * 119.99436 * 2 1 3 29 29 H 1.09005 * 113.47274 * 336.06822 * 4 3 2 30 30 H 1.09005 * 113.47546 * 106.52904 * 4 3 2 31 31 H 1.08996 * 114.17219 * 272.38138 * 5 4 3 32 32 H 1.08996 * 114.17198 * 139.66912 * 5 4 3 33 33 H 0.97001 * 119.99579 * 179.97438 * 14 13 11 34 34 H 1.09007 * 109.47349 * 34.47664 * 19 10 8 35 35 H 1.08991 * 109.47502 * 154.48372 * 19 10 8 36 36 H 1.08999 * 109.47102 * 300.00252 * 20 19 10 37 37 H 1.09000 * 109.46645 * 60.00207 * 20 19 10 38 38 H 0.96706 * 116.99670 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0195 1.3851 0.0000 4 6 2.2869 1.8511 -1.3735 5 6 3.5603 2.5212 -0.8388 6 6 3.4741 1.4314 0.2390 7 1 3.9883 0.5094 -0.0321 8 6 3.8408 1.9194 1.6169 9 8 2.9698 2.2280 2.4027 10 7 5.1365 2.0140 1.9757 11 6 6.1208 1.6657 1.0873 12 1 5.9819 1.8421 0.0309 13 6 7.2973 1.0858 1.5461 14 7 7.3170 0.4695 2.7066 15 14 8.8508 1.1823 0.5133 16 1 9.9588 0.4909 1.2200 17 1 8.6150 0.5263 -0.7979 18 1 9.2134 2.6059 0.2963 19 6 5.4929 2.4878 3.3153 20 6 5.5442 4.0171 3.3184 21 6 5.9102 4.5046 4.6966 22 8 6.1101 3.7105 5.5850 23 8 6.0152 5.8210 4.9368 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 2.4844 1.0414 -2.0760 30 1 1.5459 2.5598 -1.7435 31 1 3.4083 3.5331 -0.4634 32 1 4.4234 2.4295 -1.4981 33 1 8.1382 0.0644 3.0266 34 1 4.7451 2.1479 4.0319 35 1 6.4692 2.0911 3.5932 36 1 6.2919 4.3570 2.6018 37 1 4.5677 4.4138 3.0405 38 1 6.2519 6.0856 5.8363 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001596415457.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:42 Heat of formation + Delta-G solvation = -108.609886 kcal Electronic energy + Delta-G solvation = -21595.249906 eV Core-core repulsion = 18245.266065 eV Total energy + Delta-G solvation = -3349.983842 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.63692 -41.21082 -39.41666 -37.20019 -36.69147 -33.79436 -33.69383 -32.34186 -28.15580 -27.99019 -27.04387 -25.16167 -22.98622 -22.23353 -21.37078 -20.57771 -19.27454 -18.69413 -17.99779 -17.52398 -17.05432 -16.87908 -16.31206 -16.25593 -15.92990 -15.28504 -14.94741 -14.43592 -14.27809 -14.09828 -13.74545 -13.55331 -13.41489 -13.10188 -12.96167 -12.79716 -12.57427 -12.51603 -12.40553 -12.12457 -12.00443 -11.92299 -11.74593 -11.66984 -11.51531 -10.98010 -10.31407 -9.67352 -9.51537 -8.28131 -6.01973 1.17506 1.45737 1.53063 1.61229 1.95058 2.04311 2.38391 2.82633 3.08552 3.40040 3.62286 3.95341 4.00965 4.06889 4.12339 4.26437 4.42564 4.47289 4.53510 4.55664 4.62400 4.74330 4.78879 4.88480 4.98081 5.00353 5.05637 5.20979 5.33368 5.36488 5.46097 5.54883 5.59849 5.97388 6.20872 6.44151 6.99047 7.15713 7.62498 8.04903 8.74341 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.013891 B = 0.007194 C = 0.005414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.146365 B = 3891.045092 C = 5170.432966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.013 3.987 3 N -0.476 5.476 4 C 0.009 3.991 5 C -0.117 4.117 6 C 0.027 3.973 7 H 0.092 0.908 8 C 0.471 3.529 9 O -0.622 6.622 10 N -0.448 5.448 11 C -0.352 4.352 12 H 0.112 0.888 13 C -0.001 4.001 14 N -0.894 5.894 15 Si 0.980 3.020 16 H -0.293 1.293 17 H -0.258 1.258 18 H -0.262 1.262 19 C 0.131 3.869 20 C -0.115 4.115 21 C 0.494 3.506 22 O -0.550 6.550 23 O -0.506 6.506 24 H 0.041 0.959 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.063 0.937 28 H 0.041 0.959 29 H 0.090 0.910 30 H 0.099 0.901 31 H 0.081 0.919 32 H 0.101 0.899 33 H 0.270 0.730 34 H 0.026 0.974 35 H 0.098 0.902 36 H 0.119 0.881 37 H 0.099 0.901 38 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.754 4.805 -8.332 10.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.115 4.115 3 N -0.199 5.199 4 C -0.120 4.120 5 C -0.155 4.155 6 C -0.085 4.085 7 H 0.109 0.891 8 C 0.260 3.740 9 O -0.508 6.508 10 N -0.167 5.167 11 C -0.479 4.479 12 H 0.129 0.871 13 C -0.204 4.204 14 N -0.531 5.531 15 Si 0.804 3.196 16 H -0.219 1.219 17 H -0.182 1.182 18 H -0.187 1.187 19 C 0.007 3.993 20 C -0.154 4.154 21 C 0.338 3.662 22 O -0.441 6.441 23 O -0.320 6.320 24 H 0.060 0.940 25 H 0.085 0.915 26 H 0.092 0.908 27 H 0.081 0.919 28 H 0.060 0.940 29 H 0.108 0.892 30 H 0.118 0.882 31 H 0.100 0.900 32 H 0.119 0.881 33 H 0.080 0.920 34 H 0.045 0.955 35 H 0.116 0.884 36 H 0.137 0.863 37 H 0.117 0.883 38 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -3.586 4.840 -7.524 9.638 hybrid contribution 1.491 -0.748 0.538 1.752 sum -2.095 4.092 -6.986 8.363 Atomic orbital electron populations 1.21566 0.93173 1.02036 1.01971 1.22680 0.98201 0.90082 1.00568 1.68803 1.12810 1.20534 1.17765 1.23893 0.97134 1.00235 0.90690 1.23016 0.99380 0.97354 0.95723 1.23086 0.91113 1.00870 0.93460 0.89055 1.20846 0.82309 0.80841 0.89955 1.90501 1.49749 1.55735 1.54855 1.43622 1.04482 1.56042 1.12524 1.19845 0.95982 1.40682 0.91413 0.87055 1.26263 1.02967 0.93453 0.97720 1.70082 1.28978 1.31311 1.22685 0.85183 0.76866 0.79074 0.78512 1.21876 1.18207 1.18663 1.20940 1.02543 0.90614 0.85253 1.21613 1.04685 0.97715 0.91386 1.23394 0.71628 0.80197 0.90978 1.90702 1.48070 1.57244 1.48099 1.84505 1.81986 1.24773 1.40709 0.93986 0.91531 0.90832 0.91926 0.93989 0.89204 0.88249 0.90000 0.88102 0.92029 0.95504 0.88446 0.86251 0.88271 0.71174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.36 10.24 71.98 0.74 -2.62 16 2 C 0.01 0.41 5.54 86.30 0.48 0.89 16 3 N -0.48 -16.77 5.76 -906.68 -5.22 -22.00 16 4 C 0.01 0.22 7.71 83.57 0.64 0.87 16 5 C -0.12 -3.52 7.38 30.94 0.23 -3.29 16 6 C 0.03 1.05 2.22 41.44 0.09 1.15 16 7 H 0.09 3.59 7.66 -2.39 -0.02 3.58 16 8 C 0.47 23.12 7.18 87.66 0.63 23.75 16 9 O -0.62 -34.60 16.32 -3.07 -0.05 -34.65 16 10 N -0.45 -22.22 2.55 -635.53 -1.62 -23.84 16 11 C -0.35 -16.66 8.56 84.04 0.72 -15.94 16 12 H 0.11 4.74 6.46 -2.91 -0.02 4.72 16 13 C 0.00 -0.05 4.92 84.93 0.42 0.37 16 14 N -0.89 -47.71 11.34 21.66 0.25 -47.46 16 15 Si 0.98 37.34 29.61 68.60 2.03 39.38 16 16 H -0.29 -11.51 7.11 99.48 0.71 -10.80 16 17 H -0.26 -9.19 7.11 99.48 0.71 -8.48 16 18 H -0.26 -9.52 7.11 99.48 0.71 -8.82 16 19 C 0.13 6.56 4.21 86.38 0.36 6.92 16 20 C -0.12 -4.63 6.11 29.85 0.18 -4.45 16 21 C 0.49 18.39 8.33 71.24 0.59 18.98 16 22 O -0.55 -24.37 16.74 21.97 0.37 -24.00 16 23 O -0.51 -13.72 13.42 -51.37 -0.69 -14.41 16 24 H 0.04 1.24 8.14 -2.39 -0.02 1.23 16 25 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 27 H 0.06 1.63 7.30 -2.39 -0.02 1.61 16 28 H 0.04 1.53 8.08 -2.39 -0.02 1.51 16 29 H 0.09 1.90 7.42 -2.38 -0.02 1.89 16 30 H 0.10 2.24 8.14 -2.38 -0.02 2.22 16 31 H 0.08 2.62 8.11 -2.39 -0.02 2.60 16 32 H 0.10 2.59 7.82 -2.39 -0.02 2.58 16 33 H 0.27 13.78 8.31 -92.71 -0.77 13.01 16 34 H 0.03 1.48 7.52 -2.38 -0.02 1.47 16 35 H 0.10 5.30 5.30 -2.39 -0.01 5.28 16 36 H 0.12 4.38 8.14 -2.39 -0.02 4.36 16 37 H 0.10 3.96 8.14 -2.39 -0.02 3.95 16 38 H 0.43 7.18 9.10 -74.05 -0.67 6.51 16 Total: -1.00 -69.50 321.39 0.54 -68.95 By element: Atomic # 1 Polarization: 31.02 SS G_CDS: 0.40 Total: 31.42 kcal Atomic # 6 Polarization: 21.54 SS G_CDS: 5.09 Total: 26.63 kcal Atomic # 7 Polarization: -86.71 SS G_CDS: -6.60 Total: -93.31 kcal Atomic # 8 Polarization: -72.69 SS G_CDS: -0.37 Total: -73.07 kcal Atomic # 14 Polarization: 37.34 SS G_CDS: 2.03 Total: 39.38 kcal Total: -69.50 0.54 -68.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596415457.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.657 kcal (2) G-P(sol) polarization free energy of solvation -69.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds