Wall clock time and date at job start Mon Mar 30 2020 02:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 110.30045 * 2 1 4 4 C 1.54793 * 110.19687 * 122.42356 * 2 1 3 5 5 N 1.48149 * 104.41662 * 142.93934 * 4 2 1 6 6 C 1.34773 * 127.83662 * 140.36217 * 5 4 2 7 7 O 1.21593 * 119.99894 * 179.68349 * 6 5 4 8 8 N 1.34777 * 120.00097 * 359.41221 * 6 5 4 9 9 C 1.46504 * 119.99854 * 180.27545 * 8 6 5 10 10 C 1.50701 * 109.46923 * 179.97438 * 9 8 6 11 11 H 1.07998 * 120.00145 * 359.97438 * 10 9 8 12 12 C 1.37869 * 120.00027 * 179.97438 * 10 9 8 13 13 N 1.31517 * 120.00263 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00327 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47216 * 89.99974 * 14 12 10 16 16 H 1.48501 * 109.47673 * 210.00204 * 14 12 10 17 17 H 1.48497 * 109.47236 * 330.00450 * 14 12 10 18 18 C 1.48146 * 104.32215 * 320.10703 * 5 4 2 19 19 C 1.54290 * 110.33946 * 237.82633 * 2 1 3 20 20 C 1.52992 * 110.43367 * 0.04617 * 19 2 1 21 21 C 1.50694 * 110.34158 * 122.25919 * 19 2 1 22 22 O 1.20832 * 119.99795 * 356.99203 * 21 19 2 23 23 O 1.34227 * 120.00529 * 176.98528 * 21 19 2 24 24 H 1.09003 * 109.46934 * 182.17287 * 1 2 3 25 25 H 1.09002 * 109.47274 * 302.17217 * 1 2 3 26 26 H 1.08999 * 109.47387 * 62.17267 * 1 2 3 27 27 H 1.08998 * 110.54577 * 24.20399 * 4 2 1 28 28 H 1.08996 * 110.46102 * 261.63903 * 4 2 1 29 29 H 0.97000 * 119.99736 * 0.26819 * 8 6 5 30 30 H 1.08998 * 109.46968 * 299.99782 * 9 8 6 31 31 H 1.08997 * 109.47198 * 59.99605 * 9 8 6 32 32 H 0.96994 * 120.00789 * 180.02562 * 13 12 10 33 33 H 1.08997 * 110.40800 * 158.62916 * 18 5 4 34 34 H 1.08998 * 110.40832 * 281.05981 * 18 5 4 35 35 H 1.09007 * 109.47554 * 302.95676 * 20 19 2 36 36 H 1.09003 * 109.47538 * 62.95812 * 20 19 2 37 37 H 1.09002 * 109.47171 * 182.95781 * 20 19 2 38 38 H 0.96695 * 117.00312 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0222 0.0000 4 6 2.0645 -0.7789 1.2263 5 7 3.2664 -1.4825 0.7212 6 6 4.4424 -1.6678 1.3529 7 8 5.3390 -2.2771 0.8021 8 7 4.6266 -1.1730 2.5929 9 6 5.9071 -1.3692 3.2772 10 6 5.8535 -0.7237 4.6379 11 1 4.9557 -0.2176 4.9605 12 6 6.9507 -0.7794 5.4709 13 7 8.0443 -1.3953 5.0778 14 14 6.8842 0.0201 7.1578 15 1 6.3896 -0.9648 8.1532 16 1 8.2442 0.4742 7.5445 17 1 5.9658 1.1863 7.1171 18 6 2.8801 -1.9416 -0.6334 19 6 2.0663 -0.7703 -1.2245 20 6 0.9077 -1.3014 -2.0709 21 6 2.9556 0.1191 -2.0547 22 8 3.1097 1.2770 -1.7456 23 8 3.5765 -0.3749 -3.1373 24 1 -0.3633 -1.0270 0.0390 25 1 -0.3634 0.5472 0.8699 26 1 -0.3634 0.4797 -0.9088 27 1 1.3229 -1.4970 1.5763 28 1 2.3354 -0.0903 2.0266 29 1 3.9113 -0.6868 3.0322 30 1 6.0999 -2.4363 3.3881 31 1 6.7057 -0.9147 2.6909 32 1 8.8161 -1.4348 5.6640 33 1 3.7672 -2.1313 -1.2377 34 1 2.2639 -2.8384 -0.5694 35 1 0.2667 -1.9320 -1.4547 36 1 0.3281 -0.4641 -2.4597 37 1 1.3028 -1.8865 -2.9014 38 1 4.1362 0.2339 -3.6384 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599920253.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:17 Heat of formation + Delta-G solvation = -120.007815 kcal Electronic energy + Delta-G solvation = -21391.249833 eV Core-core repulsion = 18040.771740 eV Total energy + Delta-G solvation = -3350.478093 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.14372 -39.34444 -37.76186 -36.18685 -34.16094 -33.47188 -32.20835 -31.29090 -27.82899 -26.47673 -25.90491 -24.53842 -22.50596 -22.11827 -19.52574 -18.97974 -18.13056 -17.92177 -16.90553 -16.08437 -15.88476 -15.56440 -15.18595 -14.68367 -14.34026 -14.23295 -13.80694 -13.56702 -13.11816 -12.80310 -12.44415 -12.38115 -12.23723 -11.94655 -11.77374 -11.73263 -11.62638 -11.31324 -11.05168 -10.92323 -10.86672 -10.71136 -10.51229 -10.27839 -9.43859 -9.35353 -8.72460 -8.52321 -7.74540 -6.13508 -4.20139 2.09395 2.83375 3.06145 3.26333 3.32522 3.35447 3.84982 4.08281 4.29631 4.34887 4.63247 4.77971 4.93688 4.99000 5.15007 5.18893 5.22583 5.31869 5.38193 5.44418 5.58389 5.66336 5.68837 5.75389 5.84357 5.98411 6.10632 6.36508 6.40336 7.17705 7.51221 7.57932 7.58777 7.77395 7.89109 8.03990 8.76784 8.89984 9.31793 9.48666 10.96820 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.028068 B = 0.004302 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.335778 B = 6506.453718 C = 6829.794021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.100 4.100 3 H 0.105 0.895 4 C 0.107 3.893 5 N -0.651 5.651 6 C 0.717 3.283 7 O -0.595 6.595 8 N -0.725 5.725 9 C 0.267 3.733 10 C -0.541 4.541 11 H 0.062 0.938 12 C 0.064 3.936 13 N -0.886 5.886 14 Si 0.905 3.095 15 H -0.279 1.279 16 H -0.284 1.284 17 H -0.273 1.273 18 C 0.139 3.861 19 C -0.066 4.066 20 C -0.136 4.136 21 C 0.494 3.506 22 O -0.509 6.509 23 O -0.512 6.512 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.386 0.614 30 H 0.026 0.974 31 H 0.025 0.975 32 H 0.266 0.734 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.652 1.609 -13.674 22.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.119 4.119 3 H 0.123 0.877 4 C -0.016 4.016 5 N -0.391 5.391 6 C 0.419 3.581 7 O -0.474 6.474 8 N -0.377 5.377 9 C 0.146 3.854 10 C -0.580 4.580 11 H 0.080 0.920 12 C -0.140 4.140 13 N -0.523 5.523 14 Si 0.732 3.268 15 H -0.205 1.205 16 H -0.210 1.210 17 H -0.198 1.198 18 C 0.014 3.986 19 C -0.069 4.069 20 C -0.193 4.193 21 C 0.335 3.665 22 O -0.397 6.397 23 O -0.324 6.324 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.091 0.909 28 H 0.099 0.901 29 H 0.219 0.781 30 H 0.044 0.956 31 H 0.043 0.957 32 H 0.075 0.925 33 H 0.110 0.890 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -16.800 1.133 -13.590 21.638 hybrid contribution 0.162 1.137 0.802 1.401 sum -16.638 2.270 -12.788 21.107 Atomic orbital electron populations 1.21920 0.93368 1.02328 1.02377 1.22365 0.96518 1.01157 0.91875 0.87732 1.22478 0.87440 0.95425 0.96301 1.48106 1.12834 1.60844 1.17336 1.15594 0.80334 0.80188 0.81941 1.90884 1.41359 1.47894 1.67280 1.45733 1.19442 1.58089 1.14405 1.19017 0.78473 0.97287 0.90659 1.21207 1.00068 1.36716 0.99965 0.91972 1.24937 0.95014 0.95233 0.98791 1.69978 1.03437 1.41899 1.36989 0.86404 0.77475 0.79499 0.83453 1.20465 1.21006 1.19770 1.22065 0.99026 0.93878 0.83638 1.21478 0.94958 0.95799 0.94639 1.21917 0.96056 1.01704 0.99666 1.23113 0.77829 0.86968 0.78555 1.90698 1.60742 1.19231 1.68993 1.84499 1.59937 1.48297 1.39622 0.91805 0.91878 0.92003 0.90865 0.90077 0.78089 0.95621 0.95719 0.92459 0.89035 0.90020 0.90164 0.91490 0.91105 0.73099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 7.94 37.16 0.30 -0.72 16 2 C -0.10 -1.05 3.27 -89.00 -0.29 -1.34 16 3 H 0.10 1.34 6.47 -51.93 -0.34 1.00 16 4 C 0.11 1.30 6.48 -2.19 -0.01 1.29 16 5 N -0.65 -10.68 3.31 -174.76 -0.58 -11.26 16 6 C 0.72 15.83 8.57 -86.92 -0.74 15.09 16 7 O -0.60 -15.60 16.61 5.28 0.09 -15.51 16 8 N -0.72 -16.41 5.53 -66.41 -0.37 -16.77 16 9 C 0.27 7.36 5.43 -5.19 -0.03 7.33 16 10 C -0.54 -15.03 9.28 -34.44 -0.32 -15.35 16 11 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 12 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 13 N -0.89 -26.51 13.29 55.43 0.74 -25.77 16 14 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 15 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 18 C 0.14 1.82 6.12 -2.41 -0.01 1.80 16 19 C -0.07 -0.71 0.97 -154.26 -0.15 -0.86 16 20 C -0.14 -0.96 7.21 37.15 0.27 -0.69 16 21 C 0.49 6.30 6.91 36.00 0.25 6.55 16 22 O -0.51 -8.04 16.02 -18.76 -0.30 -8.34 16 23 O -0.51 -5.29 13.12 -39.25 -0.51 -5.80 16 24 H 0.06 0.37 6.68 -51.93 -0.35 0.03 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.40 6.89 -51.93 -0.36 0.05 16 27 H 0.07 0.73 7.84 -51.93 -0.41 0.32 16 28 H 0.08 1.00 6.85 -51.93 -0.36 0.64 16 29 H 0.39 7.60 6.71 -40.82 -0.27 7.33 16 30 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.02 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.09 1.38 7.38 -51.93 -0.38 1.00 16 34 H 0.08 0.88 7.86 -51.93 -0.41 0.47 16 35 H 0.08 0.44 6.62 -51.93 -0.34 0.10 16 36 H 0.07 0.42 6.99 -51.93 -0.36 0.06 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.41 2.65 9.10 45.56 0.41 3.07 16 LS Contribution 314.24 15.07 4.74 4.74 Total: -1.00 -36.25 314.24 -6.46 -42.70 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -4.39 Total: 5.11 kcal Atomic # 6 Polarization: 15.64 SS G_CDS: -0.85 Total: 14.79 kcal Atomic # 7 Polarization: -53.59 SS G_CDS: -0.21 Total: -53.80 kcal Atomic # 8 Polarization: -28.93 SS G_CDS: -0.73 Total: -29.65 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -36.25 -6.46 -42.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599920253.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.304 kcal (2) G-P(sol) polarization free energy of solvation -36.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds