Wall clock time and date at job start Mon Mar 30 2020 02:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 110.30045 * 2 1 4 4 C 1.54793 * 110.19687 * 122.42356 * 2 1 3 5 5 N 1.48149 * 104.41662 * 142.93934 * 4 2 1 6 6 C 1.34773 * 127.83662 * 140.36217 * 5 4 2 7 7 O 1.21593 * 119.99894 * 179.68349 * 6 5 4 8 8 N 1.34777 * 120.00097 * 359.41221 * 6 5 4 9 9 C 1.46504 * 119.99854 * 180.27545 * 8 6 5 10 10 C 1.50701 * 109.46923 * 179.97438 * 9 8 6 11 11 H 1.07998 * 120.00145 * 359.97438 * 10 9 8 12 12 C 1.37869 * 120.00027 * 179.97438 * 10 9 8 13 13 N 1.31517 * 120.00263 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00327 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47216 * 89.99974 * 14 12 10 16 16 H 1.48501 * 109.47673 * 210.00204 * 14 12 10 17 17 H 1.48497 * 109.47236 * 330.00450 * 14 12 10 18 18 C 1.48146 * 104.32215 * 320.10703 * 5 4 2 19 19 C 1.54290 * 110.33946 * 237.82633 * 2 1 3 20 20 C 1.52992 * 110.43367 * 0.04617 * 19 2 1 21 21 C 1.50694 * 110.34158 * 122.25919 * 19 2 1 22 22 O 1.20832 * 119.99795 * 356.99203 * 21 19 2 23 23 O 1.34227 * 120.00529 * 176.98528 * 21 19 2 24 24 H 1.09003 * 109.46934 * 182.17287 * 1 2 3 25 25 H 1.09002 * 109.47274 * 302.17217 * 1 2 3 26 26 H 1.08999 * 109.47387 * 62.17267 * 1 2 3 27 27 H 1.08998 * 110.54577 * 24.20399 * 4 2 1 28 28 H 1.08996 * 110.46102 * 261.63903 * 4 2 1 29 29 H 0.97000 * 119.99736 * 0.26819 * 8 6 5 30 30 H 1.08998 * 109.46968 * 299.99782 * 9 8 6 31 31 H 1.08997 * 109.47198 * 59.99605 * 9 8 6 32 32 H 0.96994 * 120.00789 * 180.02562 * 13 12 10 33 33 H 1.08997 * 110.40800 * 158.62916 * 18 5 4 34 34 H 1.08998 * 110.40832 * 281.05981 * 18 5 4 35 35 H 1.09007 * 109.47554 * 302.95676 * 20 19 2 36 36 H 1.09003 * 109.47538 * 62.95812 * 20 19 2 37 37 H 1.09002 * 109.47171 * 182.95781 * 20 19 2 38 38 H 0.96695 * 117.00312 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0222 0.0000 4 6 2.0645 -0.7789 1.2263 5 7 3.2664 -1.4825 0.7212 6 6 4.4424 -1.6678 1.3529 7 8 5.3390 -2.2771 0.8021 8 7 4.6266 -1.1730 2.5929 9 6 5.9071 -1.3692 3.2772 10 6 5.8535 -0.7237 4.6379 11 1 4.9557 -0.2176 4.9605 12 6 6.9507 -0.7794 5.4709 13 7 8.0443 -1.3953 5.0778 14 14 6.8842 0.0201 7.1578 15 1 6.3896 -0.9648 8.1532 16 1 8.2442 0.4742 7.5445 17 1 5.9658 1.1863 7.1171 18 6 2.8801 -1.9416 -0.6334 19 6 2.0663 -0.7703 -1.2245 20 6 0.9077 -1.3014 -2.0709 21 6 2.9556 0.1191 -2.0547 22 8 3.1097 1.2770 -1.7456 23 8 3.5765 -0.3749 -3.1373 24 1 -0.3633 -1.0270 0.0390 25 1 -0.3634 0.5472 0.8699 26 1 -0.3634 0.4797 -0.9088 27 1 1.3229 -1.4970 1.5763 28 1 2.3354 -0.0903 2.0266 29 1 3.9113 -0.6868 3.0322 30 1 6.0999 -2.4363 3.3881 31 1 6.7057 -0.9147 2.6909 32 1 8.8161 -1.4348 5.6640 33 1 3.7672 -2.1313 -1.2377 34 1 2.2639 -2.8384 -0.5694 35 1 0.2667 -1.9320 -1.4547 36 1 0.3281 -0.4641 -2.4597 37 1 1.3028 -1.8865 -2.9014 38 1 4.1362 0.2339 -3.6384 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599920253.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:17 Heat of formation + Delta-G solvation = -148.171791 kcal Electronic energy + Delta-G solvation = -21392.471115 eV Core-core repulsion = 18040.771740 eV Total energy + Delta-G solvation = -3351.699375 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.17685 -40.78490 -39.04594 -37.19012 -36.19369 -34.81471 -34.10434 -32.13511 -29.61458 -27.69132 -26.79804 -25.75114 -24.31008 -23.23656 -21.21139 -19.94548 -19.58760 -18.93221 -18.23839 -17.64840 -17.29532 -17.06110 -16.51392 -16.47497 -15.52090 -15.10647 -15.06707 -14.84750 -14.67915 -14.10080 -13.91891 -13.60973 -13.38738 -13.15665 -13.04873 -12.91465 -12.71763 -12.63093 -12.36508 -12.24572 -12.14373 -11.82961 -11.52875 -11.48704 -11.46738 -11.26835 -10.82264 -10.16110 -9.52063 -8.29901 -6.47045 1.09003 1.42122 1.45855 1.55619 1.62628 1.98784 2.15401 2.37662 3.04925 3.11466 3.30314 3.41788 3.84926 4.03920 4.20462 4.29781 4.45828 4.50470 4.58084 4.71922 4.78599 4.81665 4.97315 5.01778 5.16829 5.20141 5.22418 5.23278 5.31505 5.45441 5.51797 5.57409 5.65920 5.81659 6.15959 6.63876 6.88362 7.10256 7.22962 7.62223 8.82684 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.028068 B = 0.004302 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.335778 B = 6506.453718 C = 6829.794021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.094 4.094 3 H 0.078 0.922 4 C 0.101 3.899 5 N -0.650 5.650 6 C 0.712 3.288 7 O -0.647 6.647 8 N -0.720 5.720 9 C 0.286 3.714 10 C -0.556 4.556 11 H 0.082 0.918 12 C 0.005 3.995 13 N -0.931 5.931 14 Si 0.988 3.012 15 H -0.268 1.268 16 H -0.283 1.283 17 H -0.257 1.257 18 C 0.132 3.868 19 C -0.060 4.060 20 C -0.131 4.131 21 C 0.487 3.513 22 O -0.548 6.548 23 O -0.508 6.508 24 H 0.086 0.914 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.108 0.892 28 H 0.076 0.924 29 H 0.402 0.598 30 H -0.011 1.011 31 H -0.018 1.018 32 H 0.270 0.730 33 H 0.065 0.935 34 H 0.117 0.883 35 H 0.106 0.894 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.964 2.036 -13.128 24.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.114 4.114 3 H 0.096 0.904 4 C -0.021 4.021 5 N -0.388 5.388 6 C 0.414 3.586 7 O -0.530 6.530 8 N -0.374 5.374 9 C 0.163 3.837 10 C -0.594 4.594 11 H 0.100 0.900 12 C -0.195 4.195 13 N -0.569 5.569 14 Si 0.811 3.189 15 H -0.193 1.193 16 H -0.209 1.209 17 H -0.180 1.180 18 C 0.009 3.991 19 C -0.063 4.063 20 C -0.188 4.188 21 C 0.331 3.669 22 O -0.438 6.438 23 O -0.321 6.321 24 H 0.105 0.895 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.126 0.874 28 H 0.094 0.906 29 H 0.238 0.762 30 H 0.007 0.993 31 H 0.000 1.000 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.134 0.866 35 H 0.124 0.876 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -20.206 1.576 -13.098 24.132 hybrid contribution 1.199 0.985 0.491 1.627 sum -19.008 2.561 -12.607 22.952 Atomic orbital electron populations 1.21921 0.90007 1.04095 1.03293 1.22319 0.99084 0.99188 0.90773 0.90384 1.22881 0.86118 0.96084 0.97061 1.48049 1.12090 1.60155 1.18480 1.15739 0.81531 0.79722 0.81634 1.90835 1.43836 1.50013 1.68330 1.45324 1.18321 1.58799 1.14958 1.18444 0.79637 0.94590 0.91050 1.21559 1.01097 1.36897 0.99800 0.89950 1.26078 0.94263 0.95496 1.03637 1.70143 1.04461 1.43317 1.38998 0.85110 0.77723 0.78827 0.77253 1.19292 1.20884 1.18041 1.22392 0.98897 0.96251 0.81540 1.21583 0.95421 0.94341 0.94929 1.21982 0.94719 1.02501 0.99565 1.23688 0.77632 0.86790 0.78804 1.90686 1.62112 1.20952 1.70065 1.84475 1.59843 1.48659 1.39138 0.89513 0.91204 0.91004 0.87372 0.90599 0.76219 0.99328 1.00004 0.92158 0.91669 0.86568 0.87584 0.90253 0.90634 0.71351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 7.94 71.98 0.57 -0.80 16 2 C -0.09 -1.77 3.27 -9.74 -0.03 -1.80 16 3 H 0.08 1.94 6.47 -2.39 -0.02 1.92 16 4 C 0.10 2.22 6.48 86.67 0.56 2.78 16 5 N -0.65 -21.01 3.31 -825.09 -2.73 -23.75 16 6 C 0.71 32.47 8.57 179.06 1.53 34.00 16 7 O -0.65 -35.78 16.61 -4.01 -0.07 -35.85 16 8 N -0.72 -33.63 5.53 -482.29 -2.66 -36.30 16 9 C 0.29 16.60 5.43 85.63 0.46 17.06 16 10 C -0.56 -31.27 9.28 25.60 0.24 -31.04 16 11 H 0.08 4.20 7.60 -2.91 -0.02 4.18 16 12 C 0.00 0.28 5.46 84.65 0.46 0.74 16 13 N -0.93 -57.31 13.29 21.44 0.28 -57.02 16 14 Si 0.99 43.04 29.54 68.60 2.03 45.07 16 15 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 16 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 17 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 18 C 0.13 3.30 6.12 86.53 0.53 3.83 16 19 C -0.06 -1.17 0.97 -52.02 -0.05 -1.22 16 20 C -0.13 -1.33 7.21 71.98 0.52 -0.81 16 21 C 0.49 12.20 6.91 71.23 0.49 12.70 16 22 O -0.55 -17.51 16.02 21.95 0.35 -17.16 16 23 O -0.51 -10.25 13.12 -51.39 -0.67 -10.93 16 24 H 0.09 0.52 6.68 -2.39 -0.02 0.50 16 25 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.07 0.63 6.89 -2.39 -0.02 0.61 16 27 H 0.11 1.71 7.84 -2.39 -0.02 1.69 16 28 H 0.08 1.76 6.85 -2.39 -0.02 1.74 16 29 H 0.40 15.86 6.71 -92.71 -0.62 15.24 16 30 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 31 H -0.02 -1.18 8.14 -2.39 -0.02 -1.20 16 32 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 33 H 0.06 1.99 7.38 -2.39 -0.02 1.97 16 34 H 0.12 2.13 7.86 -2.39 -0.02 2.11 16 35 H 0.11 0.58 6.62 -2.38 -0.02 0.57 16 36 H 0.08 0.67 6.99 -2.39 -0.02 0.66 16 37 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.43 5.42 9.10 -74.06 -0.67 4.75 16 Total: -1.00 -83.78 314.24 1.62 -82.16 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: -0.20 Total: 18.33 kcal Atomic # 6 Polarization: 30.16 SS G_CDS: 5.29 Total: 35.45 kcal Atomic # 7 Polarization: -111.95 SS G_CDS: -5.11 Total: -117.07 kcal Atomic # 8 Polarization: -63.55 SS G_CDS: -0.39 Total: -63.94 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -83.78 1.62 -82.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599920253.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.010 kcal (2) G-P(sol) polarization free energy of solvation -83.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds