Wall clock time and date at job start Mon Mar 30 2020 01:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47236 * 2 1 4 4 C 1.50703 * 109.47249 * 239.99982 * 2 1 3 5 5 O 1.20828 * 120.00144 * 240.00258 * 4 2 1 6 6 O 1.34228 * 119.99886 * 60.00092 * 4 2 1 7 7 C 1.50703 * 109.47193 * 120.00210 * 2 1 3 8 8 O 1.21277 * 120.00107 * 236.43903 * 7 2 1 9 9 N 1.34775 * 119.99905 * 56.43140 * 7 2 1 10 10 C 1.46969 * 120.59344 * 185.42778 * 9 7 2 11 11 C 1.53373 * 108.63332 * 235.25025 * 10 9 7 12 12 N 1.46963 * 108.63258 * 310.57481 * 11 10 9 13 13 C 1.36943 * 120.59156 * 235.20342 * 12 11 10 14 14 H 1.08002 * 119.99717 * 149.34957 * 13 12 11 15 15 C 1.38811 * 119.99874 * 329.07196 * 13 12 11 16 16 N 1.31614 * 120.00099 * 348.87269 * 15 13 12 17 17 Si 1.86802 * 119.99630 * 168.87476 * 15 13 12 18 18 H 1.48502 * 109.47292 * 60.00069 * 17 15 13 19 19 H 1.48508 * 109.46735 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47036 * 299.99480 * 17 15 13 21 21 C 1.46962 * 118.81588 * 55.47780 * 12 11 10 22 22 C 1.46959 * 120.59660 * 5.44724 * 9 7 2 23 23 H 1.08995 * 109.47167 * 307.12541 * 1 2 3 24 24 H 1.09000 * 109.46954 * 67.12277 * 1 2 3 25 25 H 1.09001 * 109.46989 * 187.12544 * 1 2 3 26 26 H 1.09000 * 109.47256 * 184.69949 * 3 2 1 27 27 H 1.08998 * 109.47405 * 304.70398 * 3 2 1 28 28 H 1.09010 * 109.47074 * 64.70113 * 3 2 1 29 29 H 0.96702 * 117.00125 * 180.02562 * 6 4 2 30 30 H 1.08991 * 109.61222 * 115.50486 * 10 9 7 31 31 H 1.09004 * 109.60546 * 354.99070 * 10 9 7 32 32 H 1.08995 * 109.60857 * 190.83024 * 11 10 9 33 33 H 1.09001 * 109.75314 * 70.40261 * 11 10 9 34 34 H 0.97000 * 120.00272 * 179.97438 * 16 15 13 35 35 H 1.09008 * 109.60804 * 64.26671 * 21 12 11 36 36 H 1.08997 * 109.61594 * 184.77491 * 21 12 11 37 37 H 1.08998 * 109.61090 * 244.49470 * 22 9 7 38 38 H 1.08999 * 109.61163 * 4.83554 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.7270 -1.6928 -1.1196 6 8 1.7081 -0.2518 -2.4496 7 6 2.0324 -0.7105 1.2305 8 8 2.7819 -0.1416 1.9956 9 7 1.6485 -1.9779 1.4806 10 6 2.0333 -2.6425 2.7338 11 6 2.7552 -3.9519 2.3924 12 7 1.9448 -4.6944 1.4168 13 6 1.5556 -5.9826 1.6707 14 1 0.6240 -6.3541 1.2699 15 6 2.3611 -6.8125 2.4383 16 7 3.5887 -6.4445 2.7380 17 14 1.7027 -8.4517 3.0457 18 1 1.3240 -9.2945 1.8831 19 1 2.7512 -9.1431 3.8383 20 1 0.5097 -8.2204 3.8991 21 6 1.5646 -4.0318 0.1613 22 6 0.8381 -2.7204 0.5052 23 1 -0.3633 0.6202 0.8193 24 1 -0.3633 0.3995 -0.9468 25 1 -0.3633 -1.0197 0.1275 26 1 3.1268 1.4436 -0.0842 27 1 1.6096 1.9801 -0.8448 28 1 1.7471 1.9314 0.9292 29 1 2.0536 -0.7410 -3.2089 30 1 1.1416 -2.8590 3.3219 31 1 2.7007 -1.9941 3.3016 32 1 2.8773 -4.5487 3.2963 33 1 3.7333 -3.7326 1.9640 34 1 4.1515 -7.0242 3.2747 35 1 2.4588 -3.8153 -0.4234 36 1 0.9003 -4.6813 -0.4086 37 1 -0.1388 -2.9425 0.9347 38 1 0.7134 -2.1224 -0.3976 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001602832043.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:33 Heat of formation + Delta-G solvation = -83.572826 kcal Electronic energy + Delta-G solvation = -22511.997305 eV Core-core repulsion = 19163.099151 eV Total energy + Delta-G solvation = -3348.898153 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.25485 -39.14667 -36.88331 -36.14137 -34.85400 -33.77847 -31.12195 -30.23585 -27.44377 -27.03315 -24.81273 -23.83440 -22.89659 -22.04325 -19.93632 -18.66341 -17.94185 -17.55323 -16.37491 -16.11058 -15.54796 -15.37427 -14.75212 -14.35012 -13.91445 -13.74090 -13.53073 -13.42374 -13.19314 -12.85897 -12.43013 -12.26489 -12.24051 -11.98267 -11.74308 -11.56182 -11.17963 -11.07637 -10.75473 -10.65853 -10.52440 -10.37167 -10.12024 -9.94721 -9.83279 -9.39023 -8.53782 -8.21757 -6.60081 -5.78668 -3.28651 2.12607 2.45498 3.28864 3.35247 3.37503 3.42660 3.43615 4.36154 4.47618 4.65015 4.72445 5.06619 5.25421 5.38603 5.40524 5.48217 5.59668 5.65477 5.76142 5.79084 5.88145 5.98740 6.06124 6.18622 6.34783 6.37239 6.44730 6.57424 6.82203 7.04277 7.34452 7.65329 7.74688 7.82962 7.88611 8.44195 8.46778 9.18768 9.80009 10.39149 11.28131 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.033428 B = 0.005604 C = 0.005282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.428752 B = 4995.343959 C = 5299.885067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.072 4.072 3 C -0.123 4.123 4 C 0.482 3.518 5 O -0.480 6.480 6 O -0.514 6.514 7 C 0.529 3.471 8 O -0.544 6.544 9 N -0.579 5.579 10 C 0.086 3.914 11 C 0.160 3.840 12 N -0.591 5.591 13 C -0.256 4.256 14 H 0.065 0.935 15 C 0.004 3.996 16 N -0.904 5.904 17 Si 0.907 3.093 18 H -0.282 1.282 19 H -0.290 1.290 20 H -0.283 1.283 21 C 0.132 3.868 22 C 0.090 3.910 23 H 0.077 0.923 24 H 0.079 0.921 25 H 0.081 0.919 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.411 0.589 30 H 0.061 0.939 31 H 0.081 0.919 32 H 0.102 0.898 33 H 0.024 0.976 34 H 0.256 0.744 35 H 0.042 0.958 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.233 13.516 -7.829 17.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.077 4.077 3 C -0.181 4.181 4 C 0.322 3.678 5 O -0.366 6.366 6 O -0.326 6.326 7 C 0.315 3.685 8 O -0.423 6.423 9 N -0.309 5.309 10 C -0.037 4.037 11 C 0.034 3.966 12 N -0.314 5.314 13 C -0.386 4.386 14 H 0.083 0.917 15 C -0.195 4.195 16 N -0.548 5.548 17 Si 0.737 3.263 18 H -0.209 1.209 19 H -0.216 1.216 20 H -0.209 1.209 21 C 0.005 3.995 22 C -0.035 4.035 23 H 0.096 0.904 24 H 0.098 0.902 25 H 0.099 0.901 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.097 0.903 29 H 0.270 0.730 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.120 0.880 33 H 0.042 0.958 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.658 13.593 -6.936 16.650 hybrid contribution -0.027 -1.295 -0.310 1.332 sum -6.685 12.298 -7.247 15.762 Atomic orbital electron populations 1.22222 0.89956 1.04843 1.04267 1.20781 0.99475 0.98138 0.89287 1.21642 1.02126 0.90781 1.03537 1.22891 0.78032 0.82437 0.84446 1.90907 1.34270 1.24574 1.86815 1.84473 1.72512 1.59096 1.16556 1.19584 0.80985 0.81948 0.86015 1.90659 1.35708 1.66393 1.49495 1.47887 1.51432 1.11418 1.20195 1.22584 1.00131 0.96728 0.84248 1.21190 0.91352 0.88233 0.95845 1.43963 1.61837 1.11578 1.14020 1.19149 1.01228 0.87400 1.30810 0.91710 1.25188 0.94751 0.97797 1.01717 1.69954 1.06359 1.37620 1.40826 0.86309 0.77844 0.83565 0.78610 1.20868 1.21572 1.20949 1.21392 0.97495 0.90735 0.89905 1.22642 0.94386 0.95563 0.90869 0.90426 0.90170 0.90081 0.91502 0.90851 0.90301 0.72971 0.92028 0.90106 0.88029 0.95788 0.93392 0.94047 0.92176 0.91825 0.91604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 8.11 37.16 0.30 -1.32 16 2 C -0.07 -0.98 0.70 -156.81 -0.11 -1.09 16 3 C -0.12 -1.42 7.71 37.16 0.29 -1.14 16 4 C 0.48 6.64 5.25 36.01 0.19 6.83 16 5 O -0.48 -8.59 13.26 -18.75 -0.25 -8.84 16 6 O -0.51 -4.93 13.12 -39.25 -0.52 -5.45 16 7 C 0.53 9.66 5.93 -10.98 -0.07 9.60 16 8 O -0.54 -11.41 15.38 5.56 0.09 -11.32 16 9 N -0.58 -11.12 2.82 -172.22 -0.49 -11.60 16 10 C 0.09 1.81 6.60 -3.59 -0.02 1.79 16 11 C 0.16 4.01 5.46 -3.60 -0.02 3.99 16 12 N -0.59 -15.11 2.96 -171.76 -0.51 -15.62 16 13 C -0.26 -7.00 9.58 -15.06 -0.14 -7.15 16 14 H 0.07 1.71 7.85 -52.49 -0.41 1.30 16 15 C 0.00 0.12 5.04 -17.43 -0.09 0.03 16 16 N -0.90 -26.44 11.01 55.49 0.61 -25.83 16 17 Si 0.91 21.56 29.57 -169.99 -5.03 16.54 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 C 0.13 2.85 6.50 -3.37 -0.02 2.83 16 22 C 0.09 1.59 3.83 -3.37 -0.01 1.57 16 23 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.08 0.67 7.94 -51.93 -0.41 0.25 16 25 H 0.08 0.90 4.75 -51.93 -0.25 0.66 16 26 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.08 0.89 8.02 -51.92 -0.42 0.48 16 29 H 0.41 2.34 9.10 45.56 0.41 2.76 16 30 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.08 1.69 6.99 -51.93 -0.36 1.33 16 32 H 0.10 2.76 5.99 -51.93 -0.31 2.45 16 33 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 35 H 0.04 0.98 6.50 -51.92 -0.34 0.64 16 36 H 0.06 1.23 7.93 -51.93 -0.41 0.82 16 37 H 0.06 1.06 8.02 -51.93 -0.42 0.64 16 38 H 0.07 0.99 3.24 -51.93 -0.17 0.82 16 LS Contribution 299.47 15.07 4.51 4.51 Total: -1.00 -34.00 299.47 -5.61 -39.61 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -4.33 Total: 2.06 kcal Atomic # 6 Polarization: 15.65 SS G_CDS: 0.29 Total: 15.94 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: -0.38 Total: -53.05 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -0.68 Total: -25.61 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.54 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -34.00 -5.61 -39.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602832043.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.964 kcal (2) G-P(sol) polarization free energy of solvation -33.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds