Wall clock time and date at job start Mon Mar 30 2020 01:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47236 * 2 1 4 4 C 1.50703 * 109.47249 * 239.99982 * 2 1 3 5 5 O 1.20828 * 120.00144 * 240.00258 * 4 2 1 6 6 O 1.34228 * 119.99886 * 60.00092 * 4 2 1 7 7 C 1.50703 * 109.47193 * 120.00210 * 2 1 3 8 8 O 1.21277 * 120.00107 * 236.43903 * 7 2 1 9 9 N 1.34775 * 119.99905 * 56.43140 * 7 2 1 10 10 C 1.46969 * 120.59344 * 185.42778 * 9 7 2 11 11 C 1.53373 * 108.63332 * 235.25025 * 10 9 7 12 12 N 1.46963 * 108.63258 * 310.57481 * 11 10 9 13 13 C 1.36943 * 120.59156 * 235.20342 * 12 11 10 14 14 H 1.08002 * 119.99717 * 149.34957 * 13 12 11 15 15 C 1.38811 * 119.99874 * 329.07196 * 13 12 11 16 16 N 1.31614 * 120.00099 * 348.87269 * 15 13 12 17 17 Si 1.86802 * 119.99630 * 168.87476 * 15 13 12 18 18 H 1.48502 * 109.47292 * 60.00069 * 17 15 13 19 19 H 1.48508 * 109.46735 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47036 * 299.99480 * 17 15 13 21 21 C 1.46962 * 118.81588 * 55.47780 * 12 11 10 22 22 C 1.46959 * 120.59660 * 5.44724 * 9 7 2 23 23 H 1.08995 * 109.47167 * 307.12541 * 1 2 3 24 24 H 1.09000 * 109.46954 * 67.12277 * 1 2 3 25 25 H 1.09001 * 109.46989 * 187.12544 * 1 2 3 26 26 H 1.09000 * 109.47256 * 184.69949 * 3 2 1 27 27 H 1.08998 * 109.47405 * 304.70398 * 3 2 1 28 28 H 1.09010 * 109.47074 * 64.70113 * 3 2 1 29 29 H 0.96702 * 117.00125 * 180.02562 * 6 4 2 30 30 H 1.08991 * 109.61222 * 115.50486 * 10 9 7 31 31 H 1.09004 * 109.60546 * 354.99070 * 10 9 7 32 32 H 1.08995 * 109.60857 * 190.83024 * 11 10 9 33 33 H 1.09001 * 109.75314 * 70.40261 * 11 10 9 34 34 H 0.97000 * 120.00272 * 179.97438 * 16 15 13 35 35 H 1.09008 * 109.60804 * 64.26671 * 21 12 11 36 36 H 1.08997 * 109.61594 * 184.77491 * 21 12 11 37 37 H 1.08998 * 109.61090 * 244.49470 * 22 9 7 38 38 H 1.08999 * 109.61163 * 4.83554 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.7270 -1.6928 -1.1196 6 8 1.7081 -0.2518 -2.4496 7 6 2.0324 -0.7105 1.2305 8 8 2.7819 -0.1416 1.9956 9 7 1.6485 -1.9779 1.4806 10 6 2.0333 -2.6425 2.7338 11 6 2.7552 -3.9519 2.3924 12 7 1.9448 -4.6944 1.4168 13 6 1.5556 -5.9826 1.6707 14 1 0.6240 -6.3541 1.2699 15 6 2.3611 -6.8125 2.4383 16 7 3.5887 -6.4445 2.7380 17 14 1.7027 -8.4517 3.0457 18 1 1.3240 -9.2945 1.8831 19 1 2.7512 -9.1431 3.8383 20 1 0.5097 -8.2204 3.8991 21 6 1.5646 -4.0318 0.1613 22 6 0.8381 -2.7204 0.5052 23 1 -0.3633 0.6202 0.8193 24 1 -0.3633 0.3995 -0.9468 25 1 -0.3633 -1.0197 0.1275 26 1 3.1268 1.4436 -0.0842 27 1 1.6096 1.9801 -0.8448 28 1 1.7471 1.9314 0.9292 29 1 2.0536 -0.7410 -3.2089 30 1 1.1416 -2.8590 3.3219 31 1 2.7007 -1.9941 3.3016 32 1 2.8773 -4.5487 3.2963 33 1 3.7333 -3.7326 1.9640 34 1 4.1515 -7.0242 3.2747 35 1 2.4588 -3.8153 -0.4234 36 1 0.9003 -4.6813 -0.4086 37 1 -0.1388 -2.9425 0.9347 38 1 0.7134 -2.1224 -0.3976 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001602832043.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:32 Heat of formation + Delta-G solvation = -108.614977 kcal Electronic energy + Delta-G solvation = -22513.083214 eV Core-core repulsion = 19163.099151 eV Total energy + Delta-G solvation = -3349.984063 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.46732 -40.45349 -38.59357 -37.16244 -36.08886 -35.48631 -33.07245 -31.96627 -28.84947 -28.32990 -26.15214 -25.36566 -24.54731 -23.53343 -21.54560 -20.14463 -19.09472 -18.86957 -18.08815 -17.41385 -16.90407 -16.74876 -16.60200 -15.74421 -15.51463 -15.27946 -15.18213 -14.96538 -14.73768 -14.00747 -13.75850 -13.41430 -13.28557 -13.18863 -13.01363 -12.98026 -12.69483 -12.60793 -12.43816 -12.34128 -12.17321 -11.95060 -11.90017 -11.68477 -11.45689 -10.87580 -10.61712 -9.86589 -8.63849 -7.87855 -5.42935 1.05593 1.21712 1.47838 1.50537 1.57414 1.91635 2.16873 2.49938 3.13563 3.27390 3.54608 3.69101 3.74027 4.11946 4.17559 4.19709 4.34612 4.43676 4.59663 4.66556 4.69603 4.74937 4.75144 4.78512 4.86458 5.02500 5.16347 5.19317 5.22979 5.42500 5.55700 5.62162 5.64931 6.35674 6.39877 6.91763 7.00161 7.08940 7.76452 8.32813 9.17003 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.033428 B = 0.005604 C = 0.005282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.428752 B = 4995.343959 C = 5299.885067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.071 4.071 3 C -0.120 4.120 4 C 0.490 3.510 5 O -0.530 6.530 6 O -0.492 6.492 7 C 0.522 3.478 8 O -0.578 6.578 9 N -0.587 5.587 10 C 0.100 3.900 11 C 0.173 3.827 12 N -0.608 5.608 13 C -0.266 4.266 14 H 0.076 0.924 15 C -0.052 4.052 16 N -0.941 5.941 17 Si 0.977 3.023 18 H -0.274 1.274 19 H -0.297 1.297 20 H -0.273 1.273 21 C 0.128 3.872 22 C 0.103 3.897 23 H 0.090 0.910 24 H 0.111 0.889 25 H 0.074 0.926 26 H 0.047 0.953 27 H 0.109 0.891 28 H 0.080 0.920 29 H 0.432 0.568 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.075 0.925 33 H -0.019 1.019 34 H 0.251 0.749 35 H 0.017 0.983 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.984 14.717 -9.295 20.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.075 4.075 3 C -0.177 4.177 4 C 0.332 3.668 5 O -0.420 6.420 6 O -0.305 6.305 7 C 0.309 3.691 8 O -0.459 6.459 9 N -0.317 5.317 10 C -0.024 4.024 11 C 0.046 3.954 12 N -0.331 5.331 13 C -0.395 4.395 14 H 0.094 0.906 15 C -0.247 4.247 16 N -0.587 5.587 17 Si 0.805 3.195 18 H -0.199 1.199 19 H -0.223 1.223 20 H -0.198 1.198 21 C 0.002 3.998 22 C -0.020 4.020 23 H 0.109 0.891 24 H 0.130 0.870 25 H 0.093 0.907 26 H 0.066 0.934 27 H 0.127 0.873 28 H 0.099 0.901 29 H 0.294 0.706 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.093 0.907 33 H -0.001 1.001 34 H 0.060 0.940 35 H 0.035 0.965 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -9.456 14.833 -8.469 19.524 hybrid contribution 0.873 -1.598 0.033 1.821 sum -8.583 13.236 -8.436 17.889 Atomic orbital electron populations 1.22277 0.86883 1.05023 1.06631 1.20819 1.01737 0.98223 0.86768 1.21687 1.01117 0.89676 1.05224 1.22891 0.76884 0.81420 0.85589 1.90925 1.36564 1.26884 1.87613 1.84410 1.71665 1.58600 1.15870 1.20482 0.79930 0.81450 0.87189 1.90636 1.36976 1.67100 1.51140 1.47954 1.51893 1.12132 1.19745 1.22193 1.00071 0.94541 0.85591 1.20859 0.90215 0.89905 0.94432 1.44219 1.61748 1.11644 1.15515 1.19573 1.01501 0.88120 1.30338 0.90633 1.26035 0.94902 1.01469 1.02291 1.70155 1.07816 1.38889 1.41863 0.85201 0.77091 0.79152 0.78092 1.19937 1.22338 1.19815 1.21512 0.97182 0.92789 0.88270 1.22590 0.93936 0.93557 0.91924 0.89130 0.87035 0.90701 0.93382 0.87269 0.90143 0.70579 0.90604 0.90594 0.90687 1.00063 0.93999 0.96480 0.90954 0.89952 0.88517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 8.11 71.98 0.58 -1.91 16 2 C -0.07 -1.74 0.70 -53.67 -0.04 -1.78 16 3 C -0.12 -2.43 7.71 71.98 0.56 -1.87 16 4 C 0.49 12.30 5.25 71.24 0.37 12.68 16 5 O -0.53 -18.64 13.26 21.96 0.29 -18.35 16 6 O -0.49 -7.47 13.12 -51.40 -0.67 -8.14 16 7 C 0.52 18.65 5.93 87.66 0.52 19.17 16 8 O -0.58 -24.41 15.38 -3.02 -0.05 -24.45 16 9 N -0.59 -22.26 2.82 -817.16 -2.30 -24.57 16 10 C 0.10 4.29 6.60 86.42 0.57 4.86 16 11 C 0.17 9.06 5.46 86.42 0.47 9.54 16 12 N -0.61 -31.65 2.96 -697.34 -2.06 -33.71 16 13 C -0.27 -14.59 9.58 84.03 0.81 -13.78 16 14 H 0.08 3.92 7.85 -2.91 -0.02 3.89 16 15 C -0.05 -2.92 5.04 84.86 0.43 -2.49 16 16 N -0.94 -57.22 11.01 21.65 0.24 -56.98 16 17 Si 0.98 44.72 29.57 68.60 2.03 46.74 16 18 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 19 H -0.30 -13.81 7.11 99.48 0.71 -13.11 16 20 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 21 C 0.13 5.54 6.50 86.57 0.56 6.11 16 22 C 0.10 3.47 3.83 86.57 0.33 3.80 16 23 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.11 1.20 7.94 -2.39 -0.02 1.18 16 25 H 0.07 1.35 4.75 -2.39 -0.01 1.34 16 26 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.08 1.62 8.02 -2.38 -0.02 1.60 16 29 H 0.43 3.31 9.10 -74.06 -0.67 2.64 16 30 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 31 H 0.08 3.30 6.99 -2.38 -0.02 3.28 16 32 H 0.07 4.31 5.99 -2.39 -0.01 4.29 16 33 H -0.02 -1.12 8.14 -2.39 -0.02 -1.14 16 34 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 35 H 0.02 0.83 6.50 -2.38 -0.02 0.81 16 36 H 0.07 2.88 7.93 -2.39 -0.02 2.86 16 37 H 0.08 2.50 8.02 -2.39 -0.02 2.48 16 38 H 0.10 2.65 3.24 -2.39 -0.01 2.65 16 Total: -1.00 -77.11 299.47 3.05 -74.06 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: 0.41 Total: 11.10 kcal Atomic # 6 Polarization: 29.15 SS G_CDS: 5.16 Total: 34.32 kcal Atomic # 7 Polarization: -111.14 SS G_CDS: -4.13 Total: -115.26 kcal Atomic # 8 Polarization: -50.52 SS G_CDS: -0.43 Total: -50.95 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -77.11 3.05 -74.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602832043.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.558 kcal (2) G-P(sol) polarization free energy of solvation -77.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds