Wall clock time and date at job start Mon Mar 30 2020 01:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47108 * 2 1 4 4 H 1.08999 * 109.47447 * 55.00323 * 3 2 1 5 5 C 1.50701 * 109.47062 * 174.99902 * 3 2 1 6 6 O 1.20827 * 120.00391 * 120.00129 * 5 3 2 7 7 O 1.34231 * 119.99978 * 299.99961 * 5 3 2 8 8 N 1.46897 * 109.47175 * 294.99646 * 3 2 1 9 9 C 1.46905 * 110.99826 * 174.99915 * 8 3 2 10 10 C 1.53243 * 109.33672 * 187.25448 * 9 8 3 11 11 N 1.47076 * 108.52280 * 306.17389 * 10 9 8 12 12 C 1.34777 * 120.88062 * 231.18540 * 11 10 9 13 13 O 1.21687 * 120.00006 * 5.22924 * 12 11 10 14 14 C 1.46376 * 120.00313 * 185.22734 * 12 11 10 15 15 H 1.07997 * 119.99552 * 354.99977 * 14 12 11 16 16 C 1.40044 * 120.00321 * 175.00114 * 14 12 11 17 17 N 1.30673 * 119.99689 * 359.97438 * 16 14 12 18 18 Si 1.86795 * 120.00192 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47234 * 269.99511 * 18 16 14 20 20 H 1.48504 * 109.46981 * 29.99629 * 18 16 14 21 21 H 1.48500 * 109.47228 * 149.99275 * 18 16 14 22 22 C 1.47077 * 118.23996 * 51.45605 * 11 10 9 23 23 C 1.46898 * 111.00153 * 299.30213 * 8 3 2 24 24 H 1.09004 * 109.47332 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47108 * 299.99886 * 1 2 3 26 26 H 1.09001 * 109.46944 * 60.00230 * 1 2 3 27 27 H 1.08998 * 109.47608 * 239.99952 * 2 1 3 28 28 H 1.09001 * 109.46944 * 119.99770 * 2 1 3 29 29 H 0.96703 * 117.00252 * 180.02562 * 7 5 3 30 30 H 1.08994 * 109.49159 * 67.30254 * 9 8 3 31 31 H 1.08999 * 109.51460 * 307.22708 * 9 8 3 32 32 H 1.08999 * 109.62657 * 186.46027 * 10 9 8 33 33 H 1.09008 * 109.62520 * 65.87988 * 10 9 8 34 34 H 0.97000 * 120.00181 * 180.02562 * 17 16 14 35 35 H 1.09007 * 109.62715 * 68.25082 * 22 11 10 36 36 H 1.09000 * 109.63081 * 188.83321 * 22 11 10 37 37 H 1.09001 * 109.49368 * 292.70476 * 23 8 3 38 38 H 1.08999 * 109.49029 * 52.75792 * 23 8 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1239 6 8 4.2191 1.9416 -0.7444 7 8 4.1273 0.8933 1.1988 8 7 1.6514 2.0992 -1.2552 9 6 2.0208 3.5210 -1.2418 10 6 1.4411 4.2077 -2.4830 11 7 1.8758 3.4634 -3.6747 12 6 2.4539 4.0978 -4.7138 13 8 2.7090 5.2851 -4.6361 14 6 2.7749 3.3587 -5.9358 15 1 2.6235 2.2902 -5.9760 16 6 3.2785 4.0372 -7.0527 17 7 3.4613 5.3301 -7.0040 18 14 3.6875 3.0941 -8.6123 19 1 5.1008 2.6412 -8.5607 20 1 2.7933 1.9139 -8.7260 21 1 3.4934 3.9773 -9.7902 22 6 1.6574 2.0092 -3.7050 23 6 2.2340 1.4082 -2.4132 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 5.0934 0.9188 1.2340 30 1 3.1067 3.6147 -1.2482 31 1 1.6202 3.9928 -0.3445 32 1 1.8063 5.2332 -2.5383 33 1 0.3524 4.2062 -2.4273 34 1 3.8097 5.8002 -7.7777 35 1 0.5892 1.8005 -3.7645 36 1 2.1658 1.5805 -4.5686 37 1 3.3170 1.5313 -2.4033 38 1 1.9881 0.3474 -2.3653 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603503743.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:27 Heat of formation + Delta-G solvation = -108.524215 kcal Electronic energy + Delta-G solvation = -21945.418027 eV Core-core repulsion = 18595.437900 eV Total energy + Delta-G solvation = -3349.980127 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.87888 -38.53822 -36.87625 -35.96156 -34.45535 -32.50278 -32.02577 -30.44914 -28.27166 -26.42757 -24.88897 -23.37342 -22.37522 -21.24015 -20.19319 -18.88749 -18.10424 -17.03917 -16.25534 -15.98442 -15.63811 -15.30835 -14.74268 -14.23562 -14.21479 -13.89526 -13.71898 -13.54564 -13.08469 -12.52272 -12.44705 -11.87214 -11.79603 -11.68945 -11.43326 -11.29565 -11.11388 -11.06815 -10.88444 -10.81512 -10.66111 -10.45010 -10.34204 -10.17145 -9.91183 -8.82606 -8.21636 -7.53681 -7.12036 -6.16017 -4.60392 2.13271 2.99413 3.15980 3.22495 3.25584 3.85863 4.12570 4.58576 4.61792 4.66628 4.86192 5.04933 5.25431 5.35911 5.49046 5.57495 5.64040 5.74956 5.78128 5.85971 5.93683 5.99256 6.04025 6.14455 6.26995 6.37062 6.46755 6.52576 6.60009 6.84098 7.03426 7.19038 7.48760 7.66588 7.85855 8.17925 8.41107 9.05810 9.49540 10.61922 10.80723 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.026219 B = 0.005087 C = 0.005043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.656659 B = 5502.406947 C = 5550.884285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.112 4.112 3 C 0.094 3.906 4 H 0.117 0.883 5 C 0.440 3.560 6 O -0.498 6.498 7 O -0.523 6.523 8 N -0.498 5.498 9 C 0.028 3.972 10 C 0.129 3.871 11 N -0.642 5.642 12 C 0.561 3.439 13 O -0.579 6.579 14 C -0.543 4.543 15 H 0.072 0.928 16 C 0.088 3.912 17 N -0.769 5.769 18 Si 0.906 3.094 19 H -0.272 1.272 20 H -0.264 1.264 21 H -0.279 1.279 22 C 0.133 3.867 23 C 0.014 3.986 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.403 0.597 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.048 0.952 34 H 0.268 0.732 35 H 0.048 0.952 36 H 0.094 0.906 37 H 0.070 0.930 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.521 -11.758 14.386 18.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.150 4.150 3 C -0.018 4.018 4 H 0.135 0.865 5 C 0.280 3.720 6 O -0.384 6.384 7 O -0.334 6.334 8 N -0.222 5.222 9 C -0.101 4.101 10 C 0.005 3.995 11 N -0.380 5.380 12 C 0.367 3.633 13 O -0.462 6.462 14 C -0.580 4.580 15 H 0.090 0.910 16 C -0.132 4.132 17 N -0.398 5.398 18 Si 0.731 3.269 19 H -0.198 1.198 20 H -0.189 1.189 21 H -0.205 1.205 22 C 0.008 3.992 23 C -0.114 4.114 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.261 0.739 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.104 0.896 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.112 0.888 37 H 0.088 0.912 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.069 -10.792 13.994 18.134 hybrid contribution 1.807 -0.463 -0.538 1.942 sum -2.262 -11.255 13.456 17.688 Atomic orbital electron populations 1.21653 0.93848 1.01367 1.03087 1.21587 0.97889 0.92589 1.02942 1.21884 0.84513 0.99010 0.96367 0.86520 1.25611 0.93873 0.73921 0.78567 1.90756 1.65974 1.41892 1.39826 1.84595 1.28427 1.74677 1.45737 1.62540 1.56248 1.03219 1.00200 1.22783 1.00756 0.87076 0.99446 1.21151 0.97359 0.96913 0.84125 1.48196 1.65797 1.06163 1.17891 1.18235 0.76445 0.86685 0.81956 1.90582 1.57409 1.16440 1.81762 1.20961 1.45845 0.94796 0.96411 0.91008 1.25724 0.93324 0.94596 0.99546 1.70020 1.32434 1.08055 1.29245 0.86400 0.79334 0.80088 0.81109 1.19783 1.18856 1.20461 1.21525 0.99084 0.82766 0.95843 1.23112 1.00115 0.97363 0.90760 0.92907 0.92820 0.90909 0.91032 0.90660 0.73900 0.92212 0.91201 0.89566 0.93379 0.92152 0.93385 0.88825 0.91174 0.90822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.80 37.16 0.36 -0.88 16 2 C -0.11 -1.07 5.19 -26.73 -0.14 -1.21 16 3 C 0.09 1.10 2.27 -68.87 -0.16 0.94 16 4 H 0.12 1.18 8.07 -51.93 -0.42 0.76 16 5 C 0.44 5.78 7.05 36.01 0.25 6.04 16 6 O -0.50 -8.67 12.41 -18.75 -0.23 -8.91 16 7 O -0.52 -5.21 13.23 -39.26 -0.52 -5.73 16 8 N -0.50 -7.35 4.07 -227.44 -0.93 -8.28 16 9 C 0.03 0.47 5.21 -3.70 -0.02 0.45 16 10 C 0.13 2.65 6.61 -3.60 -0.02 2.62 16 11 N -0.64 -15.24 3.00 -173.84 -0.52 -15.76 16 12 C 0.56 16.49 7.63 -12.99 -0.10 16.39 16 13 O -0.58 -19.27 14.49 5.20 0.08 -19.19 16 14 C -0.54 -15.58 8.86 -35.63 -0.32 -15.90 16 15 H 0.07 1.87 5.74 -52.49 -0.30 1.57 16 16 C 0.09 2.49 5.50 -17.37 -0.10 2.39 16 17 N -0.77 -23.46 11.84 55.55 0.66 -22.80 16 18 Si 0.91 20.41 29.56 -169.99 -5.02 15.38 16 19 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 20 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16 21 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 22 C 0.13 2.58 6.50 -3.36 -0.02 2.56 16 23 C 0.01 0.24 4.93 -3.46 -0.02 0.22 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.76 7.75 -51.93 -0.40 0.36 16 27 H 0.07 0.73 6.02 -51.93 -0.31 0.41 16 28 H 0.07 0.62 7.99 -51.93 -0.42 0.21 16 29 H 0.40 2.61 9.10 45.56 0.41 3.02 16 30 H 0.06 1.19 5.96 -51.93 -0.31 0.88 16 31 H 0.07 0.99 8.05 -51.93 -0.42 0.57 16 32 H 0.09 1.97 7.04 -51.93 -0.37 1.60 16 33 H 0.05 0.91 8.14 -51.92 -0.42 0.49 16 34 H 0.27 7.41 8.29 -40.82 -0.34 7.07 16 35 H 0.05 0.86 8.14 -51.92 -0.42 0.44 16 36 H 0.09 1.90 5.46 -51.93 -0.28 1.62 16 37 H 0.07 1.37 5.51 -51.93 -0.29 1.08 16 38 H 0.07 1.01 5.87 -51.93 -0.30 0.71 16 LS Contribution 302.90 15.07 4.56 4.56 Total: -1.00 -36.59 302.90 -6.42 -43.01 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -4.23 Total: 4.08 kcal Atomic # 6 Polarization: 13.90 SS G_CDS: -0.27 Total: 13.63 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: -0.79 Total: -46.84 kcal Atomic # 8 Polarization: -33.15 SS G_CDS: -0.68 Total: -33.83 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -36.59 -6.42 -43.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603503743.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.510 kcal (2) G-P(sol) polarization free energy of solvation -36.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds