Wall clock time and date at job start Mon Mar 30 2020 01:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47108 * 2 1 4 4 H 1.08999 * 109.47447 * 55.00323 * 3 2 1 5 5 C 1.50701 * 109.47062 * 174.99902 * 3 2 1 6 6 O 1.20827 * 120.00391 * 120.00129 * 5 3 2 7 7 O 1.34231 * 119.99978 * 299.99961 * 5 3 2 8 8 N 1.46897 * 109.47175 * 294.99646 * 3 2 1 9 9 C 1.46905 * 110.99826 * 174.99915 * 8 3 2 10 10 C 1.53243 * 109.33672 * 187.25448 * 9 8 3 11 11 N 1.47076 * 108.52280 * 306.17389 * 10 9 8 12 12 C 1.34777 * 120.88062 * 231.18540 * 11 10 9 13 13 O 1.21687 * 120.00006 * 5.22924 * 12 11 10 14 14 C 1.46376 * 120.00313 * 185.22734 * 12 11 10 15 15 H 1.07997 * 119.99552 * 354.99977 * 14 12 11 16 16 C 1.40044 * 120.00321 * 175.00114 * 14 12 11 17 17 N 1.30673 * 119.99689 * 359.97438 * 16 14 12 18 18 Si 1.86795 * 120.00192 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47234 * 269.99511 * 18 16 14 20 20 H 1.48504 * 109.46981 * 29.99629 * 18 16 14 21 21 H 1.48500 * 109.47228 * 149.99275 * 18 16 14 22 22 C 1.47077 * 118.23996 * 51.45605 * 11 10 9 23 23 C 1.46898 * 111.00153 * 299.30213 * 8 3 2 24 24 H 1.09004 * 109.47332 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47108 * 299.99886 * 1 2 3 26 26 H 1.09001 * 109.46944 * 60.00230 * 1 2 3 27 27 H 1.08998 * 109.47608 * 239.99952 * 2 1 3 28 28 H 1.09001 * 109.46944 * 119.99770 * 2 1 3 29 29 H 0.96703 * 117.00252 * 180.02562 * 7 5 3 30 30 H 1.08994 * 109.49159 * 67.30254 * 9 8 3 31 31 H 1.08999 * 109.51460 * 307.22708 * 9 8 3 32 32 H 1.08999 * 109.62657 * 186.46027 * 10 9 8 33 33 H 1.09008 * 109.62520 * 65.87988 * 10 9 8 34 34 H 0.97000 * 120.00181 * 180.02562 * 17 16 14 35 35 H 1.09007 * 109.62715 * 68.25082 * 22 11 10 36 36 H 1.09000 * 109.63081 * 188.83321 * 22 11 10 37 37 H 1.09001 * 109.49368 * 292.70476 * 23 8 3 38 38 H 1.08999 * 109.49029 * 52.75792 * 23 8 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1239 6 8 4.2191 1.9416 -0.7444 7 8 4.1273 0.8933 1.1988 8 7 1.6514 2.0992 -1.2552 9 6 2.0208 3.5210 -1.2418 10 6 1.4411 4.2077 -2.4830 11 7 1.8758 3.4634 -3.6747 12 6 2.4539 4.0978 -4.7138 13 8 2.7090 5.2851 -4.6361 14 6 2.7749 3.3587 -5.9358 15 1 2.6235 2.2902 -5.9760 16 6 3.2785 4.0372 -7.0527 17 7 3.4613 5.3301 -7.0040 18 14 3.6875 3.0941 -8.6123 19 1 5.1008 2.6412 -8.5607 20 1 2.7933 1.9139 -8.7260 21 1 3.4934 3.9773 -9.7902 22 6 1.6574 2.0092 -3.7050 23 6 2.2340 1.4082 -2.4132 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 5.0934 0.9188 1.2340 30 1 3.1067 3.6147 -1.2482 31 1 1.6202 3.9928 -0.3445 32 1 1.8063 5.2332 -2.5383 33 1 0.3524 4.2062 -2.4273 34 1 3.8097 5.8002 -7.7777 35 1 0.5892 1.8005 -3.7645 36 1 2.1658 1.5805 -4.5686 37 1 3.3170 1.5313 -2.4033 38 1 1.9881 0.3474 -2.3653 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603503743.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:27 Heat of formation + Delta-G solvation = -137.855144 kcal Electronic energy + Delta-G solvation = -21946.689911 eV Core-core repulsion = 18595.437900 eV Total energy + Delta-G solvation = -3351.252011 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.98378 -40.09259 -38.49375 -37.03217 -35.98726 -34.65814 -33.38323 -31.95114 -29.56387 -28.29344 -26.40139 -24.77531 -23.32361 -22.83447 -21.38596 -20.60925 -19.09969 -18.66776 -17.87357 -17.45350 -17.00835 -16.59420 -16.10719 -16.00184 -15.88118 -15.50561 -14.98393 -14.57177 -14.40415 -14.18413 -13.56420 -13.35774 -13.30299 -12.95586 -12.82856 -12.76905 -12.65762 -12.64231 -12.32047 -12.04040 -11.95652 -11.90148 -11.76587 -11.62227 -11.45562 -10.94413 -9.80053 -9.54622 -8.99715 -8.29895 -6.84710 1.12561 1.38077 1.40231 1.55349 2.10342 2.22852 2.44742 2.61819 2.93226 3.59330 3.74593 3.92762 4.05244 4.14822 4.20974 4.41620 4.43305 4.51504 4.56672 4.63703 4.69831 4.80730 4.84671 4.97719 5.04821 5.21329 5.24695 5.32393 5.36842 5.63423 5.65769 5.71820 5.86987 5.88314 6.13014 6.41102 6.86697 6.95102 7.42361 8.45983 8.66812 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.026219 B = 0.005087 C = 0.005043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.656659 B = 5502.406947 C = 5550.884285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.105 4.105 3 C 0.092 3.908 4 H 0.143 0.857 5 C 0.446 3.554 6 O -0.548 6.548 7 O -0.510 6.510 8 N -0.490 5.490 9 C 0.042 3.958 10 C 0.126 3.874 11 N -0.646 5.646 12 C 0.540 3.460 13 O -0.635 6.635 14 C -0.569 4.569 15 H 0.093 0.907 16 C 0.027 3.973 17 N -0.824 5.824 18 Si 0.997 3.003 19 H -0.264 1.264 20 H -0.244 1.244 21 H -0.272 1.272 22 C 0.128 3.872 23 C 0.027 3.973 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.055 0.945 27 H 0.065 0.935 28 H 0.095 0.905 29 H 0.420 0.580 30 H 0.027 0.973 31 H 0.105 0.895 32 H 0.051 0.949 33 H 0.068 0.932 34 H 0.274 0.726 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.040 0.960 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.489 -14.826 15.451 21.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.143 4.143 3 C -0.019 4.019 4 H 0.161 0.839 5 C 0.288 3.712 6 O -0.438 6.438 7 O -0.321 6.321 8 N -0.214 5.214 9 C -0.087 4.087 10 C 0.002 3.998 11 N -0.383 5.383 12 C 0.346 3.654 13 O -0.523 6.523 14 C -0.605 4.605 15 H 0.111 0.889 16 C -0.188 4.188 17 N -0.454 5.454 18 Si 0.816 3.184 19 H -0.189 1.189 20 H -0.167 1.167 21 H -0.196 1.196 22 C 0.005 3.995 23 C -0.101 4.101 24 H 0.085 0.915 25 H 0.083 0.917 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.113 0.887 29 H 0.281 0.719 30 H 0.045 0.955 31 H 0.123 0.877 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.058 0.942 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.063 -13.933 15.143 21.191 hybrid contribution 2.095 0.456 -0.695 2.254 sum -2.968 -13.477 14.447 19.979 Atomic orbital electron populations 1.21625 0.92978 1.02214 1.02773 1.21599 0.98450 0.90637 1.03607 1.22124 0.83887 1.00655 0.95238 0.83944 1.25753 0.94377 0.72822 0.78216 1.90778 1.67118 1.44192 1.41740 1.84531 1.30047 1.73553 1.44015 1.62491 1.55821 1.01863 1.01186 1.22552 0.98561 0.88801 0.98776 1.21270 0.98453 0.95412 0.84680 1.48090 1.64525 1.08147 1.17544 1.18696 0.76710 0.86355 0.83650 1.90523 1.59849 1.18716 1.83223 1.21497 1.46223 0.95995 0.96829 0.88914 1.27033 0.92303 0.95547 1.03882 1.70203 1.33616 1.10628 1.30954 0.85034 0.79502 0.78736 0.75125 1.18908 1.16714 1.19649 1.21715 1.00345 0.80122 0.97314 1.22914 0.98069 0.99093 0.90067 0.91548 0.91748 0.92598 0.91663 0.88672 0.71915 0.95488 0.87655 0.93030 0.91366 0.91656 0.91304 0.90082 0.94204 0.87373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.80 71.98 0.71 -1.16 16 2 C -0.11 -1.59 5.19 30.59 0.16 -1.43 16 3 C 0.09 1.86 2.27 44.17 0.10 1.96 16 4 H 0.14 2.25 8.07 -2.39 -0.02 2.23 16 5 C 0.45 10.85 7.05 71.24 0.50 11.35 16 6 O -0.55 -19.09 12.41 21.96 0.27 -18.82 16 7 O -0.51 -8.67 13.23 -51.43 -0.68 -9.36 16 8 N -0.49 -13.52 4.07 -873.48 -3.55 -17.07 16 9 C 0.04 1.40 5.21 86.38 0.45 1.85 16 10 C 0.13 5.29 6.61 86.35 0.57 5.86 16 11 N -0.65 -31.62 3.00 -822.12 -2.47 -34.08 16 12 C 0.54 33.26 7.63 86.36 0.66 33.92 16 13 O -0.64 -44.98 14.49 -4.31 -0.06 -45.04 16 14 C -0.57 -33.50 8.86 24.83 0.22 -33.28 16 15 H 0.09 4.87 5.74 -2.91 -0.02 4.85 16 16 C 0.03 1.56 5.50 85.30 0.47 2.03 16 17 N -0.82 -52.32 11.84 21.83 0.26 -52.07 16 18 Si 1.00 42.13 29.56 68.60 2.03 44.15 16 19 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 20 H -0.24 -9.42 7.11 99.48 0.71 -8.72 16 21 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 22 C 0.13 4.95 6.50 86.50 0.56 5.51 16 23 C 0.03 0.85 4.93 86.54 0.43 1.28 16 24 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.05 0.97 7.75 -2.39 -0.02 0.95 16 27 H 0.06 1.08 6.02 -2.39 -0.01 1.07 16 28 H 0.09 1.13 7.99 -2.39 -0.02 1.11 16 29 H 0.42 4.43 9.10 -74.06 -0.67 3.76 16 30 H 0.03 1.11 5.96 -2.39 -0.01 1.09 16 31 H 0.11 2.77 8.05 -2.39 -0.02 2.75 16 32 H 0.05 2.51 7.04 -2.39 -0.02 2.49 16 33 H 0.07 2.57 8.14 -2.38 -0.02 2.55 16 34 H 0.27 15.70 8.29 -92.71 -0.77 14.94 16 35 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 36 H 0.08 3.29 5.46 -2.39 -0.01 3.28 16 37 H 0.04 1.56 5.51 -2.39 -0.01 1.55 16 38 H 0.11 2.69 5.87 -2.39 -0.01 2.68 16 Total: -1.00 -85.44 302.90 1.04 -84.40 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: 0.42 Total: 19.99 kcal Atomic # 6 Polarization: 23.07 SS G_CDS: 4.82 Total: 27.90 kcal Atomic # 7 Polarization: -97.46 SS G_CDS: -5.76 Total: -103.22 kcal Atomic # 8 Polarization: -72.75 SS G_CDS: -0.47 Total: -73.22 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.15 kcal Total: -85.44 1.04 -84.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603503743.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.457 kcal (2) G-P(sol) polarization free energy of solvation -85.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds