Wall clock time and date at job start Mon Mar 30 2020 01:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47010 * 2 1 4 4 H 1.09000 * 109.47036 * 56.62223 * 3 2 1 5 5 C 1.50696 * 109.46902 * 176.61485 * 3 2 1 6 6 H 1.08007 * 120.00084 * 120.00552 * 5 3 2 7 7 C 1.37881 * 120.00601 * 300.00176 * 5 3 2 8 8 N 1.31515 * 120.00291 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 119.99664 * 0.02562 * 7 5 3 10 10 H 1.48502 * 109.47236 * 89.99557 * 9 7 5 11 11 H 1.48497 * 109.46951 * 209.99679 * 9 7 5 12 12 H 1.48499 * 109.47036 * 329.99902 * 9 7 5 13 13 N 1.46895 * 109.47482 * 296.61692 * 3 2 1 14 14 C 1.46904 * 110.99890 * 150.57964 * 13 3 2 15 15 H 1.08997 * 110.54027 * 329.01663 * 14 13 3 16 16 C 1.54624 * 110.48506 * 206.39789 * 14 13 3 17 17 C 1.54480 * 101.76925 * 266.12343 * 16 14 13 18 18 N 1.46762 * 105.47031 * 334.58837 * 17 16 14 19 19 C 1.46504 * 124.34649 * 197.01799 * 18 17 16 20 20 C 1.50703 * 109.47183 * 89.99799 * 19 18 17 21 21 O 1.20824 * 120.00102 * 359.97438 * 20 19 18 22 22 O 1.34224 * 119.99884 * 179.97438 * 20 19 18 23 23 C 1.34418 * 111.30275 * 17.27669 * 18 17 16 24 24 O 1.21286 * 124.93941 * 179.30129 * 23 18 17 25 25 H 1.09001 * 109.46548 * 295.30401 * 1 2 3 26 26 H 1.09000 * 109.47364 * 55.30164 * 1 2 3 27 27 H 1.08996 * 109.47073 * 175.30457 * 1 2 3 28 28 H 1.09001 * 109.47122 * 240.00641 * 2 1 3 29 29 H 1.08999 * 109.47699 * 120.00532 * 2 1 3 30 30 H 0.97004 * 120.00007 * 180.02562 * 8 7 5 31 31 H 1.00890 * 111.00118 * 274.53952 * 13 3 2 32 32 H 1.09006 * 110.96860 * 148.00065 * 16 14 13 33 33 H 1.09009 * 110.96922 * 24.24433 * 16 14 13 34 34 H 1.08998 * 110.24623 * 215.58583 * 17 16 14 35 35 H 1.08999 * 110.31971 * 93.62226 * 17 16 14 36 36 H 1.08998 * 109.46892 * 329.99485 * 19 18 17 37 37 H 1.08993 * 109.47174 * 209.99623 * 19 18 17 38 38 H 0.96698 * 117.00324 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6280 1.9735 0.8582 5 6 3.5446 1.4434 0.0839 6 1 4.1292 1.8954 -0.7038 7 6 4.1751 0.8671 1.1663 8 7 5.4883 0.8674 1.2392 9 14 3.1642 0.0848 2.5284 10 1 2.9351 -1.3484 2.2141 11 1 3.8960 0.1985 3.8155 12 1 1.8579 0.7824 2.6384 13 7 1.6182 2.1111 -1.2381 14 6 1.4428 3.5538 -1.0240 15 1 1.1230 3.7525 -0.0011 16 6 0.4219 4.1304 -2.0320 17 6 1.3449 4.6212 -3.1694 18 7 2.6413 4.8865 -2.5346 19 6 3.7063 5.6931 -3.1357 20 6 3.5341 7.1345 -2.7310 21 8 2.6156 7.4552 -2.0144 22 8 4.4009 8.0621 -3.1665 23 6 2.7280 4.2896 -1.3333 24 8 3.6950 4.3362 -0.6027 25 1 -0.3632 0.4393 0.9291 26 1 -0.3634 0.5850 -0.8449 27 1 -0.3633 -1.0242 -0.0841 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 5.9319 0.4617 2.0005 31 1 2.2719 1.9333 -1.9858 32 1 -0.1327 4.9603 -1.5940 33 1 -0.2562 3.3544 -2.3874 34 1 0.9468 5.5351 -3.6104 35 1 1.4492 3.8494 -3.9319 36 1 3.6548 5.6119 -4.2214 37 1 4.6748 5.3320 -2.7899 38 1 4.2493 8.9734 -2.8808 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603515931.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:21 Heat of formation + Delta-G solvation = -138.420766 kcal Electronic energy + Delta-G solvation = -21801.026307 eV Core-core repulsion = 18449.749768 eV Total energy + Delta-G solvation = -3351.276539 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.87298 -40.83509 -37.96130 -37.45361 -37.01042 -34.66237 -33.80018 -31.75279 -29.08193 -28.67292 -26.93027 -24.24111 -23.36382 -22.24733 -21.74944 -20.54777 -19.24942 -19.03048 -18.04381 -17.62528 -17.26502 -17.08111 -16.70413 -15.99639 -15.39813 -15.30264 -14.91671 -14.68560 -14.41282 -14.25158 -14.00712 -13.69270 -13.50157 -13.43093 -13.14280 -12.93078 -12.58664 -12.47036 -12.29634 -12.13661 -11.95772 -11.78851 -11.57706 -11.46352 -11.14864 -10.88450 -10.63027 -9.83824 -9.19394 -8.25701 -6.27686 1.10976 1.27357 1.33741 1.41116 1.43150 1.82709 2.32274 2.37808 3.09402 3.33905 3.54373 3.73909 4.10720 4.16035 4.24033 4.32515 4.35245 4.43521 4.50874 4.65846 4.73305 4.76500 4.94639 5.18152 5.20763 5.23606 5.35540 5.47774 5.49079 5.53088 5.58046 5.69418 6.02908 6.05035 6.32656 6.51957 6.80325 6.91009 7.23066 7.36808 8.91889 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.023205 B = 0.006059 C = 0.005132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.342480 B = 4619.981759 C = 5454.641741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.114 4.114 3 C 0.185 3.815 4 H 0.019 0.981 5 C -0.518 4.518 6 H 0.032 0.968 7 C 0.006 3.994 8 N -0.952 5.952 9 Si 0.949 3.051 10 H -0.260 1.260 11 H -0.308 1.308 12 H -0.249 1.249 13 N -0.625 5.625 14 C 0.061 3.939 15 H 0.083 0.917 16 C -0.107 4.107 17 C 0.105 3.895 18 N -0.611 5.611 19 C 0.130 3.870 20 C 0.465 3.535 21 O -0.545 6.545 22 O -0.508 6.508 23 C 0.480 3.520 24 O -0.557 6.557 25 H 0.038 0.962 26 H 0.080 0.920 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.029 0.971 30 H 0.260 0.740 31 H 0.337 0.663 32 H 0.090 0.910 33 H 0.125 0.875 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.171 0.829 37 H 0.107 0.893 38 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.924 9.087 -13.473 20.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.152 4.152 3 C 0.075 3.925 4 H 0.037 0.963 5 C -0.558 4.558 6 H 0.050 0.950 7 C -0.190 4.190 8 N -0.594 5.594 9 Si 0.777 3.223 10 H -0.186 1.186 11 H -0.236 1.236 12 H -0.173 1.173 13 N -0.254 5.254 14 C -0.053 4.053 15 H 0.101 0.899 16 C -0.145 4.145 17 C -0.015 4.015 18 N -0.347 5.347 19 C 0.006 3.994 20 C 0.307 3.693 21 O -0.436 6.436 22 O -0.321 6.321 23 C 0.266 3.734 24 O -0.433 6.433 25 H 0.057 0.943 26 H 0.099 0.901 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.047 0.953 30 H 0.069 0.931 31 H 0.154 0.846 32 H 0.108 0.892 33 H 0.143 0.857 34 H 0.116 0.884 35 H 0.118 0.882 36 H 0.188 0.812 37 H 0.125 0.875 38 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -12.089 8.655 -12.867 19.662 hybrid contribution 1.629 0.751 1.506 2.342 sum -10.460 9.406 -11.361 18.082 Atomic orbital electron populations 1.21661 0.93956 1.01505 1.02064 1.21723 0.96936 0.96791 0.99777 1.19602 0.91360 0.92539 0.88993 0.96297 1.21933 0.92372 1.35082 1.06375 0.95008 1.25870 0.95645 0.96854 1.00670 1.70099 1.10125 1.47390 1.31747 0.85853 0.79163 0.79767 0.77504 1.18623 1.23606 1.17295 1.61073 1.51363 1.05051 1.07960 1.22453 0.92308 0.89002 1.01538 0.89880 1.22677 0.96252 1.01702 0.93906 1.22420 0.80314 1.02717 0.96095 1.48125 1.17980 1.49087 1.19484 1.20928 0.92833 0.82790 1.02881 1.24431 0.78449 0.90199 0.76214 1.90710 1.34093 1.82628 1.36123 1.84482 1.53643 1.23300 1.70709 1.22563 0.90854 0.78777 0.81168 1.90805 1.37935 1.61360 1.53152 0.94259 0.90148 0.92412 0.92252 0.95296 0.93131 0.84610 0.89192 0.85722 0.88415 0.88169 0.81164 0.87528 0.71104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.21 9.85 71.98 0.71 -3.51 16 2 C -0.11 -4.66 5.12 30.60 0.16 -4.50 16 3 C 0.18 8.52 1.60 44.17 0.07 8.59 16 4 H 0.02 0.94 6.40 -2.39 -0.02 0.93 16 5 C -0.52 -30.33 7.98 25.60 0.20 -30.13 16 6 H 0.03 2.10 7.09 -2.91 -0.02 2.08 16 7 C 0.01 0.38 5.45 84.66 0.46 0.84 16 8 N -0.95 -63.40 13.96 21.45 0.30 -63.10 16 9 Si 0.95 47.56 24.40 68.60 1.67 49.24 16 10 H -0.26 -12.14 6.84 99.48 0.68 -11.46 16 11 H -0.31 -15.67 7.11 99.48 0.71 -14.96 16 12 H -0.25 -11.61 6.53 99.48 0.65 -10.96 16 13 N -0.63 -22.95 5.40 -473.35 -2.56 -25.50 16 14 C 0.06 2.11 3.27 44.91 0.15 2.25 16 15 H 0.08 3.19 7.37 -2.39 -0.02 3.18 16 16 C -0.11 -2.29 6.89 31.65 0.22 -2.07 16 17 C 0.11 1.98 7.35 86.83 0.64 2.61 16 18 N -0.61 -17.40 2.42 -822.32 -1.99 -19.39 16 19 C 0.13 3.03 6.53 85.63 0.56 3.59 16 20 C 0.47 11.65 8.40 71.24 0.60 12.24 16 21 O -0.55 -17.75 17.19 21.97 0.38 -17.37 16 22 O -0.51 -9.18 13.42 -51.36 -0.69 -9.87 16 23 C 0.48 19.37 6.92 87.90 0.61 19.98 16 24 O -0.56 -30.08 15.98 -3.05 -0.05 -30.13 16 25 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.08 2.26 7.57 -2.39 -0.02 2.25 16 27 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.03 1.28 3.22 -2.39 -0.01 1.27 16 30 H 0.26 16.31 8.31 -92.71 -0.77 15.54 16 31 H 0.34 12.82 7.98 -89.70 -0.72 12.10 16 32 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 33 H 0.12 2.10 8.08 -2.38 -0.02 2.08 16 34 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.17 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.11 2.95 7.92 -2.39 -0.02 2.93 16 38 H 0.43 4.22 9.10 -74.06 -0.67 3.55 16 Total: -1.00 -87.01 312.64 1.06 -85.96 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: -0.38 Total: 20.27 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: 4.37 Total: 9.90 kcal Atomic # 7 Polarization: -103.74 SS G_CDS: -4.25 Total: -107.99 kcal Atomic # 8 Polarization: -57.01 SS G_CDS: -0.36 Total: -57.37 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 1.67 Total: 49.24 kcal Total: -87.01 1.06 -85.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603515931.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.465 kcal (2) G-P(sol) polarization free energy of solvation -87.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds