Wall clock time and date at job start Mon Mar 30 2020 01:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47506 * 2 1 4 4 H 1.09006 * 109.47075 * 55.73166 * 3 2 1 5 5 C 1.50697 * 109.47229 * 175.73079 * 3 2 1 6 6 H 1.07995 * 120.00290 * 120.00794 * 5 3 2 7 7 C 1.37882 * 119.99993 * 300.00202 * 5 3 2 8 8 N 1.31511 * 119.99945 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00034 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46792 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47008 * 119.99883 * 9 7 5 12 12 H 1.48494 * 109.47508 * 240.00141 * 9 7 5 13 13 N 1.46899 * 109.47354 * 295.73375 * 3 2 1 14 14 C 1.46899 * 110.99861 * 154.18376 * 13 3 2 15 15 H 1.08997 * 110.43950 * 35.30952 * 14 13 3 16 16 C 1.54629 * 110.48303 * 157.85346 * 14 13 3 17 17 C 1.54696 * 101.67036 * 143.39531 * 16 14 13 18 18 N 1.46766 * 105.52800 * 334.73796 * 17 16 14 19 19 C 1.46507 * 124.34538 * 196.90757 * 18 17 16 20 20 C 1.50700 * 109.46526 * 269.99705 * 19 18 17 21 21 O 1.20823 * 120.00226 * 0.02562 * 20 19 18 22 22 O 1.34229 * 119.99686 * 179.97438 * 20 19 18 23 23 C 1.34409 * 111.30444 * 16.92434 * 18 17 16 24 24 O 1.21287 * 124.94597 * 179.62642 * 23 18 17 25 25 H 1.09006 * 109.47215 * 65.04856 * 1 2 3 26 26 H 1.08992 * 109.47586 * 185.05222 * 1 2 3 27 27 H 1.09003 * 109.47127 * 305.05192 * 1 2 3 28 28 H 1.09004 * 109.47126 * 239.99829 * 2 1 3 29 29 H 1.09002 * 109.47062 * 120.00812 * 2 1 3 30 30 H 0.97001 * 120.00036 * 179.97438 * 8 7 5 31 31 H 1.00903 * 110.99743 * 278.13323 * 13 3 2 32 32 H 1.09007 * 110.96881 * 261.59081 * 16 14 13 33 33 H 1.08994 * 110.97168 * 25.35100 * 16 14 13 34 34 H 1.09000 * 110.29265 * 215.68160 * 17 16 14 35 35 H 1.08998 * 110.21416 * 93.75286 * 17 16 14 36 36 H 1.08999 * 109.47158 * 29.99612 * 19 18 17 37 37 H 1.08996 * 109.47188 * 149.99981 * 19 18 17 38 38 H 0.96700 * 116.99869 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6156 1.9779 0.8493 5 6 3.5433 1.4436 0.1058 6 1 4.1393 1.8916 -0.6756 7 6 4.1579 0.8730 1.2002 8 7 3.4322 0.3272 2.1515 9 14 6.0213 0.8739 1.3310 10 1 6.6008 1.5442 0.1393 11 1 6.4311 1.6043 2.5573 12 1 6.5134 -0.5254 1.4006 13 7 1.6364 2.1046 -1.2476 14 6 1.5411 3.5590 -1.0646 15 1 2.3081 3.9067 -0.3727 16 6 1.6691 4.2849 -2.4239 17 6 0.6775 5.4589 -2.2463 18 7 -0.2962 5.0031 -1.2472 19 6 -1.6029 5.6262 -1.0221 20 6 -1.4703 6.7092 0.0174 21 8 -0.3948 6.9375 0.5184 22 8 -2.5470 7.4210 0.3860 23 6 0.1650 3.9408 -0.5651 24 8 -0.4348 3.3706 0.3216 25 1 -0.3634 0.4335 -0.9318 26 1 -0.3634 -1.0236 0.0905 27 1 -0.3633 0.5902 0.8413 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5140 0.8899 30 1 3.8646 -0.0746 2.9213 31 1 2.2690 1.8755 -1.9996 32 1 2.6849 4.6495 -2.5772 33 1 1.3616 3.6356 -3.2434 34 1 0.1763 5.6763 -3.1896 35 1 1.2019 6.3437 -1.8856 36 1 -1.9641 6.0599 -1.9546 37 1 -2.3095 4.8730 -0.6739 38 1 -2.4126 8.1053 1.0559 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603515932.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:24 Heat of formation + Delta-G solvation = -119.639506 kcal Electronic energy + Delta-G solvation = -21607.635344 eV Core-core repulsion = 18257.173222 eV Total energy + Delta-G solvation = -3350.462122 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.65138 -39.60153 -36.30356 -36.04744 -35.73020 -33.14968 -31.57831 -30.20800 -27.70782 -26.84183 -25.09159 -22.66716 -22.33050 -21.23812 -19.43077 -18.88662 -18.25850 -17.07762 -16.51509 -16.39726 -16.14033 -15.68650 -14.93410 -14.60020 -13.70518 -13.56976 -13.44726 -13.22976 -12.98978 -12.66319 -12.48931 -12.40999 -12.08744 -11.60139 -11.52310 -11.21355 -11.09951 -10.83454 -10.78094 -10.73450 -10.61086 -10.18321 -9.56941 -9.39960 -9.23357 -8.99172 -8.70681 -8.30795 -7.33199 -5.94977 -4.08686 2.11570 2.56138 3.02533 3.28479 3.36804 3.38613 3.43808 4.42102 4.58371 4.71302 4.94368 5.00999 5.10747 5.18130 5.30035 5.39563 5.50463 5.72798 5.92463 6.05024 6.35213 6.37597 6.52771 6.57591 6.67761 6.87937 7.22440 7.26712 7.38901 7.49738 7.67747 7.78416 7.83927 8.08553 8.17606 8.35056 8.62078 8.66463 9.03680 9.58642 11.05608 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.022353 B = 0.005194 C = 0.005003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.335157 B = 5389.218648 C = 5594.979643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.102 4.102 3 C 0.214 3.786 4 H 0.044 0.956 5 C -0.550 4.550 6 H 0.054 0.946 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.888 3.112 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.284 1.284 13 N -0.668 5.668 14 C 0.066 3.934 15 H 0.087 0.913 16 C -0.133 4.133 17 C 0.110 3.890 18 N -0.619 5.619 19 C 0.141 3.859 20 C 0.455 3.545 21 O -0.502 6.502 22 O -0.521 6.521 23 C 0.537 3.463 24 O -0.504 6.504 25 H 0.042 0.958 26 H 0.020 0.980 27 H 0.043 0.957 28 H 0.028 0.972 29 H 0.089 0.911 30 H 0.261 0.739 31 H 0.335 0.665 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.119 0.881 37 H 0.124 0.876 38 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.788 12.212 -9.913 18.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.141 4.141 3 C 0.106 3.894 4 H 0.062 0.938 5 C -0.589 4.589 6 H 0.072 0.928 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.716 3.284 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.210 1.210 13 N -0.300 5.300 14 C -0.049 4.049 15 H 0.105 0.895 16 C -0.171 4.171 17 C -0.013 4.013 18 N -0.356 5.356 19 C 0.016 3.984 20 C 0.294 3.706 21 O -0.388 6.388 22 O -0.332 6.332 23 C 0.325 3.675 24 O -0.375 6.375 25 H 0.061 0.939 26 H 0.039 0.961 27 H 0.062 0.938 28 H 0.046 0.954 29 H 0.107 0.893 30 H 0.071 0.929 31 H 0.153 0.847 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.137 0.863 37 H 0.142 0.858 38 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -9.580 11.447 -9.267 17.569 hybrid contribution 2.130 0.864 0.757 2.420 sum -7.451 12.311 -8.509 16.718 Atomic orbital electron populations 1.21640 0.98701 0.97776 1.00782 1.21448 0.92336 0.98913 1.01394 1.19281 0.92456 0.91462 0.86166 0.93828 1.21901 0.92637 1.38402 1.05942 0.92784 1.24938 0.97897 0.95024 0.95641 1.69910 1.34753 1.37739 1.09459 0.86608 0.86138 0.77707 0.77903 1.19934 1.21094 1.20968 1.60788 1.55603 1.02828 1.10769 1.21953 0.93854 0.92726 0.96324 0.89500 1.22834 0.99643 0.96418 0.98202 1.22076 0.90200 0.97813 0.91191 1.48003 1.16582 1.31736 1.39299 1.20626 0.87289 0.93528 0.96981 1.24463 0.81629 0.81867 0.82633 1.90755 1.28886 1.65951 1.53195 1.84518 1.40329 1.49500 1.58890 1.21186 0.88076 0.77945 0.80339 1.90694 1.62734 1.54872 1.29222 0.93904 0.96136 0.93794 0.95359 0.89255 0.92919 0.84669 0.89406 0.89264 0.90595 0.91305 0.86290 0.85818 0.73273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.00 9.73 37.16 0.36 -2.64 16 2 C -0.10 -2.57 5.45 -26.73 -0.15 -2.72 16 3 C 0.21 5.45 1.74 -68.87 -0.12 5.34 16 4 H 0.04 1.30 7.12 -51.93 -0.37 0.93 16 5 C -0.55 -14.85 8.33 -34.44 -0.29 -15.14 16 6 H 0.05 1.41 7.73 -52.49 -0.41 1.01 16 7 C 0.07 1.89 5.29 -17.82 -0.09 1.79 16 8 N -0.88 -25.68 11.29 55.43 0.63 -25.05 16 9 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 10 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 N -0.67 -13.89 5.56 -100.97 -0.56 -14.45 16 14 C 0.07 1.21 3.02 -67.72 -0.20 1.01 16 15 H 0.09 1.84 7.74 -51.93 -0.40 1.44 16 16 C -0.13 -1.66 6.63 -24.98 -0.17 -1.83 16 17 C 0.11 1.22 7.35 -3.00 -0.02 1.20 16 18 N -0.62 -8.83 2.42 -173.64 -0.42 -9.25 16 19 C 0.14 1.57 6.52 -5.19 -0.03 1.53 16 20 C 0.45 5.72 8.40 36.01 0.30 6.03 16 21 O -0.50 -8.45 17.19 -18.75 -0.32 -8.77 16 22 O -0.52 -4.82 13.42 -39.25 -0.53 -5.34 16 23 C 0.54 10.38 7.62 -10.86 -0.08 10.30 16 24 O -0.50 -11.83 16.77 5.55 0.09 -11.73 16 25 H 0.04 0.93 7.88 -51.93 -0.41 0.53 16 26 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.09 2.50 5.97 -51.93 -0.31 2.19 16 30 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 31 H 0.34 6.49 8.11 -39.29 -0.32 6.17 16 32 H 0.09 0.97 8.14 -51.92 -0.42 0.55 16 33 H 0.09 1.03 8.07 -51.93 -0.42 0.61 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.12 1.40 7.93 -51.93 -0.41 0.99 16 38 H 0.41 2.24 9.10 45.56 0.41 2.66 16 LS Contribution 322.54 15.07 4.86 4.86 Total: -1.00 -35.25 322.54 -6.49 -41.74 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -4.72 Total: 6.88 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: -0.49 Total: 4.87 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: -0.36 Total: -48.75 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: -0.76 Total: -25.85 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -35.25 -6.49 -41.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603515932.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.899 kcal (2) G-P(sol) polarization free energy of solvation -35.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds