Wall clock time and date at job start Mon Mar 30 2020 01:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47506 * 2 1 4 4 H 1.09006 * 109.47075 * 55.73166 * 3 2 1 5 5 C 1.50697 * 109.47229 * 175.73079 * 3 2 1 6 6 H 1.07995 * 120.00290 * 120.00794 * 5 3 2 7 7 C 1.37882 * 119.99993 * 300.00202 * 5 3 2 8 8 N 1.31511 * 119.99945 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00034 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46792 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47008 * 119.99883 * 9 7 5 12 12 H 1.48494 * 109.47508 * 240.00141 * 9 7 5 13 13 N 1.46899 * 109.47354 * 295.73375 * 3 2 1 14 14 C 1.46899 * 110.99861 * 154.18376 * 13 3 2 15 15 H 1.08997 * 110.43950 * 35.30952 * 14 13 3 16 16 C 1.54629 * 110.48303 * 157.85346 * 14 13 3 17 17 C 1.54696 * 101.67036 * 143.39531 * 16 14 13 18 18 N 1.46766 * 105.52800 * 334.73796 * 17 16 14 19 19 C 1.46507 * 124.34538 * 196.90757 * 18 17 16 20 20 C 1.50700 * 109.46526 * 269.99705 * 19 18 17 21 21 O 1.20823 * 120.00226 * 0.02562 * 20 19 18 22 22 O 1.34229 * 119.99686 * 179.97438 * 20 19 18 23 23 C 1.34409 * 111.30444 * 16.92434 * 18 17 16 24 24 O 1.21287 * 124.94597 * 179.62642 * 23 18 17 25 25 H 1.09006 * 109.47215 * 65.04856 * 1 2 3 26 26 H 1.08992 * 109.47586 * 185.05222 * 1 2 3 27 27 H 1.09003 * 109.47127 * 305.05192 * 1 2 3 28 28 H 1.09004 * 109.47126 * 239.99829 * 2 1 3 29 29 H 1.09002 * 109.47062 * 120.00812 * 2 1 3 30 30 H 0.97001 * 120.00036 * 179.97438 * 8 7 5 31 31 H 1.00903 * 110.99743 * 278.13323 * 13 3 2 32 32 H 1.09007 * 110.96881 * 261.59081 * 16 14 13 33 33 H 1.08994 * 110.97168 * 25.35100 * 16 14 13 34 34 H 1.09000 * 110.29265 * 215.68160 * 17 16 14 35 35 H 1.08998 * 110.21416 * 93.75286 * 17 16 14 36 36 H 1.08999 * 109.47158 * 29.99612 * 19 18 17 37 37 H 1.08996 * 109.47188 * 149.99981 * 19 18 17 38 38 H 0.96700 * 116.99869 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6156 1.9779 0.8493 5 6 3.5433 1.4436 0.1058 6 1 4.1393 1.8916 -0.6756 7 6 4.1579 0.8730 1.2002 8 7 3.4322 0.3272 2.1515 9 14 6.0213 0.8739 1.3310 10 1 6.6008 1.5442 0.1393 11 1 6.4311 1.6043 2.5573 12 1 6.5134 -0.5254 1.4006 13 7 1.6364 2.1046 -1.2476 14 6 1.5411 3.5590 -1.0646 15 1 2.3081 3.9067 -0.3727 16 6 1.6691 4.2849 -2.4239 17 6 0.6775 5.4589 -2.2463 18 7 -0.2962 5.0031 -1.2472 19 6 -1.6029 5.6262 -1.0221 20 6 -1.4703 6.7092 0.0174 21 8 -0.3948 6.9375 0.5184 22 8 -2.5470 7.4210 0.3860 23 6 0.1650 3.9408 -0.5651 24 8 -0.4348 3.3706 0.3216 25 1 -0.3634 0.4335 -0.9318 26 1 -0.3634 -1.0236 0.0905 27 1 -0.3633 0.5902 0.8413 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5140 0.8899 30 1 3.8646 -0.0746 2.9213 31 1 2.2690 1.8755 -1.9996 32 1 2.6849 4.6495 -2.5772 33 1 1.3616 3.6356 -3.2434 34 1 0.1763 5.6763 -3.1896 35 1 1.2019 6.3437 -1.8856 36 1 -1.9641 6.0599 -1.9546 37 1 -2.3095 4.8730 -0.6739 38 1 -2.4126 8.1053 1.0559 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603515932.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:24 Heat of formation + Delta-G solvation = -147.334086 kcal Electronic energy + Delta-G solvation = -21608.836271 eV Core-core repulsion = 18257.173222 eV Total energy + Delta-G solvation = -3351.663049 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.79632 -40.76832 -37.80101 -37.43536 -37.00927 -34.75146 -33.44200 -31.72686 -28.88544 -28.52153 -26.72118 -24.53683 -23.41479 -22.43227 -21.36630 -20.21365 -19.22317 -18.65223 -18.06953 -17.58290 -17.25314 -16.93407 -16.66821 -16.15196 -15.37316 -15.10503 -14.81232 -14.55156 -14.43724 -14.25354 -13.88088 -13.45269 -13.29281 -13.17211 -13.10933 -12.97393 -12.60601 -12.57780 -12.49222 -12.10928 -12.03562 -11.79865 -11.53751 -11.31380 -11.01887 -10.82853 -10.43183 -9.85143 -9.11852 -8.04986 -6.28522 1.14273 1.38415 1.39602 1.47447 1.50659 1.76883 2.40306 2.40609 3.15536 3.47424 3.61637 3.74156 4.11256 4.22267 4.30219 4.34004 4.37916 4.62070 4.64580 4.72303 4.75524 4.93768 5.04783 5.17883 5.22260 5.41276 5.48418 5.52702 5.58612 5.62027 5.80562 5.98913 6.10871 6.15807 6.32354 6.80834 6.92478 7.02888 7.23418 7.43649 8.93254 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.022353 B = 0.005194 C = 0.005003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.335157 B = 5389.218648 C = 5594.979643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.099 4.099 3 C 0.226 3.774 4 H -0.010 1.010 5 C -0.559 4.559 6 H 0.062 0.938 7 C 0.013 3.987 8 N -0.917 5.917 9 Si 0.957 3.043 10 H -0.261 1.261 11 H -0.288 1.288 12 H -0.279 1.279 13 N -0.660 5.660 14 C 0.054 3.946 15 H 0.049 0.951 16 C -0.117 4.117 17 C 0.109 3.891 18 N -0.610 5.610 19 C 0.134 3.866 20 C 0.460 3.540 21 O -0.554 6.554 22 O -0.507 6.507 23 C 0.524 3.476 24 O -0.562 6.562 25 H 0.052 0.948 26 H 0.042 0.958 27 H 0.016 0.984 28 H 0.037 0.963 29 H 0.057 0.943 30 H 0.260 0.740 31 H 0.344 0.656 32 H 0.106 0.894 33 H 0.109 0.891 34 H 0.128 0.872 35 H 0.072 0.928 36 H 0.177 0.823 37 H 0.121 0.879 38 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.952 13.632 -12.897 20.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.138 4.138 3 C 0.117 3.883 4 H 0.008 0.992 5 C -0.598 4.598 6 H 0.080 0.920 7 C -0.187 4.187 8 N -0.556 5.556 9 Si 0.783 3.217 10 H -0.185 1.185 11 H -0.214 1.214 12 H -0.205 1.205 13 N -0.291 5.291 14 C -0.060 4.060 15 H 0.067 0.933 16 C -0.155 4.155 17 C -0.012 4.012 18 N -0.345 5.345 19 C 0.010 3.990 20 C 0.302 3.698 21 O -0.444 6.444 22 O -0.320 6.320 23 C 0.312 3.688 24 O -0.439 6.439 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.035 0.965 28 H 0.055 0.945 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.164 0.836 32 H 0.124 0.876 33 H 0.127 0.873 34 H 0.146 0.854 35 H 0.090 0.910 36 H 0.194 0.806 37 H 0.139 0.861 38 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -9.772 12.934 -12.313 20.357 hybrid contribution 2.078 0.535 1.693 2.734 sum -7.693 13.470 -10.620 18.799 Atomic orbital electron populations 1.21447 0.96921 0.98716 1.00089 1.21323 0.93867 0.98467 1.00129 1.18900 0.91541 0.91357 0.86494 0.99208 1.22253 0.93615 1.37814 1.06089 0.92018 1.25800 1.02672 0.94800 0.95378 1.70079 1.36683 1.38748 1.10059 0.85526 0.80399 0.77795 0.77998 1.18477 1.21398 1.20462 1.60607 1.55250 1.04486 1.08803 1.22043 0.92957 0.91589 0.99427 0.93285 1.22861 1.01578 0.96454 0.94633 1.22389 0.89627 0.96815 0.92404 1.48010 1.17934 1.30131 1.38441 1.21053 0.85553 0.93108 0.99256 1.24694 0.81244 0.81758 0.82075 1.90751 1.30882 1.67675 1.55099 1.84473 1.38672 1.49644 1.59220 1.21345 0.88254 0.79148 0.80027 1.90654 1.64197 1.57306 1.31695 0.92859 0.93846 0.96488 0.94469 0.92441 0.93050 0.83640 0.87558 0.87307 0.85409 0.90979 0.80575 0.86131 0.71222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.32 9.73 71.98 0.70 -4.62 16 2 C -0.10 -5.14 5.45 30.59 0.17 -4.97 16 3 C 0.23 12.00 1.74 44.17 0.08 12.08 16 4 H -0.01 -0.65 7.12 -2.38 -0.02 -0.66 16 5 C -0.56 -30.88 8.33 25.60 0.21 -30.66 16 6 H 0.06 3.23 7.73 -2.91 -0.02 3.21 16 7 C 0.01 0.74 5.29 84.66 0.45 1.19 16 8 N -0.92 -55.61 11.29 21.45 0.24 -55.37 16 9 Si 0.96 44.28 29.54 68.60 2.03 46.31 16 10 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 11 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 12 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 13 N -0.66 -27.72 5.56 -473.36 -2.63 -30.36 16 14 C 0.05 2.02 3.02 44.91 0.14 2.16 16 15 H 0.05 2.20 7.74 -2.39 -0.02 2.18 16 16 C -0.12 -2.61 6.63 31.73 0.21 -2.40 16 17 C 0.11 2.00 7.35 86.91 0.64 2.64 16 18 N -0.61 -16.30 2.42 -821.88 -1.99 -18.29 16 19 C 0.13 2.63 6.52 85.63 0.56 3.19 16 20 C 0.46 10.90 8.40 71.24 0.60 11.49 16 21 O -0.55 -18.59 17.19 21.97 0.38 -18.21 16 22 O -0.51 -8.27 13.42 -51.40 -0.69 -8.96 16 23 C 0.52 20.63 7.62 87.90 0.67 21.30 16 24 O -0.56 -27.82 16.77 -3.05 -0.05 -27.87 16 25 H 0.05 2.33 7.88 -2.38 -0.02 2.31 16 26 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 29 H 0.06 3.35 5.97 -2.39 -0.01 3.34 16 30 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 31 H 0.34 13.08 8.11 -89.69 -0.73 12.35 16 32 H 0.11 2.00 8.14 -2.38 -0.02 1.98 16 33 H 0.11 2.05 8.07 -2.39 -0.02 2.03 16 34 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.18 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.12 2.54 7.93 -2.39 -0.02 2.52 16 38 H 0.43 3.87 9.10 -74.06 -0.67 3.20 16 Total: -1.00 -83.07 322.54 1.38 -81.68 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: -0.32 Total: 19.67 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: 4.42 Total: 11.39 kcal Atomic # 7 Polarization: -99.63 SS G_CDS: -4.38 Total: -104.01 kcal Atomic # 8 Polarization: -54.68 SS G_CDS: -0.36 Total: -55.05 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -83.07 1.38 -81.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603515932.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.649 kcal (2) G-P(sol) polarization free energy of solvation -83.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds