Wall clock time and date at job start Mon Mar 30 2020 01:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47131 * 2 1 4 4 H 1.08996 * 109.47269 * 306.28885 * 3 2 1 5 5 C 1.50703 * 109.47234 * 186.28893 * 3 2 1 6 6 H 1.07999 * 120.00153 * 245.12703 * 5 3 2 7 7 C 1.37877 * 119.99523 * 65.12209 * 5 3 2 8 8 N 1.31506 * 120.00553 * 7.72397 * 7 5 3 9 9 Si 1.86808 * 119.99609 * 187.72297 * 7 5 3 10 10 H 1.48500 * 109.47171 * 89.99996 * 9 7 5 11 11 H 1.48501 * 109.46961 * 330.00111 * 9 7 5 12 12 H 1.48495 * 109.47113 * 210.00284 * 9 7 5 13 13 N 1.46899 * 109.46915 * 66.29368 * 3 2 1 14 14 C 1.46909 * 110.99588 * 205.12373 * 13 3 2 15 15 H 1.08998 * 110.43364 * 322.84558 * 14 13 3 16 16 C 1.54632 * 110.48478 * 200.16096 * 14 13 3 17 17 C 1.54476 * 101.76508 * 266.12093 * 16 14 13 18 18 N 1.46769 * 105.47313 * 334.57981 * 17 16 14 19 19 C 1.46498 * 124.35241 * 197.03656 * 18 17 16 20 20 C 1.50697 * 109.47335 * 270.00866 * 19 18 17 21 21 O 1.20827 * 119.99911 * 359.97438 * 20 19 18 22 22 O 1.34226 * 120.00081 * 179.97438 * 20 19 18 23 23 C 1.34417 * 111.29690 * 17.02380 * 18 17 16 24 24 O 1.21287 * 124.93737 * 179.55546 * 23 18 17 25 25 H 1.09001 * 109.46885 * 301.28248 * 1 2 3 26 26 H 1.09000 * 109.47046 * 61.28531 * 1 2 3 27 27 H 1.08994 * 109.47240 * 181.28757 * 1 2 3 28 28 H 1.08998 * 109.46909 * 240.00202 * 2 1 3 29 29 H 1.08996 * 109.47242 * 120.00582 * 2 1 3 30 30 H 0.97002 * 119.99796 * 5.51856 * 8 7 5 31 31 H 1.00898 * 110.99925 * 329.06999 * 13 3 2 32 32 H 1.09006 * 110.96532 * 24.23770 * 16 14 13 33 33 H 1.09002 * 110.96787 * 147.99530 * 16 14 13 34 34 H 1.08999 * 110.24643 * 215.58300 * 17 16 14 35 35 H 1.08996 * 110.25165 * 93.58101 * 17 16 14 36 36 H 1.09009 * 109.46783 * 30.00462 * 19 18 17 37 37 H 1.08998 * 109.47302 * 150.00260 * 19 18 17 38 38 H 0.96697 * 117.00057 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5877 1.9878 -0.8283 5 6 3.5390 1.4453 -0.1556 6 1 4.1645 1.8085 0.6464 7 6 4.1118 0.9842 -1.3220 8 7 3.3532 0.6850 -2.3536 9 14 5.9656 0.7844 -1.4366 10 1 6.3438 -0.5843 -1.0023 11 1 6.6263 1.7828 -0.5580 12 1 6.4004 0.9961 -2.8406 13 7 1.6782 2.0897 1.2681 14 6 1.5931 3.5477 1.1094 15 1 2.3652 3.9019 0.4265 16 6 1.7168 4.2495 2.4817 17 6 0.2351 4.4146 2.8859 18 7 -0.5151 4.4335 1.6245 19 6 -1.8899 4.9205 1.4876 20 6 -2.8510 3.7818 1.7124 21 8 -2.4306 2.6766 1.9610 22 8 -4.1740 3.9952 1.6365 23 6 0.2216 3.9468 0.6110 24 8 -0.1582 3.8423 -0.5361 25 1 -0.3633 0.5336 0.8783 26 1 -0.3633 0.4937 -0.9013 27 1 -0.3633 -1.0273 0.0231 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 2.4002 0.8637 -2.3230 31 1 0.8152 1.7146 1.6322 32 1 2.2480 3.6197 3.1954 33 1 2.2043 5.2193 2.3813 34 1 0.0929 5.3521 3.4234 35 1 -0.0839 3.5738 3.5018 36 1 -2.0737 5.7020 2.2250 37 1 -2.0340 5.3252 0.4858 38 1 -4.7509 3.2340 1.7878 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603515934.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:27 Heat of formation + Delta-G solvation = -150.273821 kcal Electronic energy + Delta-G solvation = -21956.191881 eV Core-core repulsion = 18604.401355 eV Total energy + Delta-G solvation = -3351.790526 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.01320 -40.91041 -38.20316 -37.61671 -37.09106 -34.88510 -33.60256 -31.72888 -28.90850 -28.42360 -26.88264 -24.85306 -23.44186 -22.39311 -21.82238 -20.59801 -19.27612 -18.84419 -18.19789 -17.69147 -17.35755 -17.05984 -16.70970 -15.83998 -15.65498 -15.50973 -15.01449 -14.72321 -14.45105 -14.34359 -14.18206 -13.78888 -13.52061 -13.31508 -13.19976 -12.63107 -12.60271 -12.50146 -12.44621 -12.18562 -11.90393 -11.88370 -11.85641 -11.63445 -11.44486 -10.65105 -10.47716 -9.99096 -9.21796 -8.52563 -6.25747 1.08941 1.21467 1.55233 1.64365 1.65791 1.81894 2.29341 2.61176 3.21012 3.24502 3.46112 3.64062 4.04864 4.09543 4.15632 4.16624 4.22859 4.23998 4.30964 4.39881 4.60415 4.70832 4.80796 4.93569 5.00478 5.11194 5.14243 5.28402 5.37256 5.42891 5.53540 5.82370 5.93526 6.09080 6.38720 6.50939 6.75116 6.85524 6.98836 7.53886 8.80003 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.026932 B = 0.005573 C = 0.005103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.398011 B = 5022.736292 C = 5485.649076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.118 4.118 3 C 0.207 3.793 4 H -0.036 1.036 5 C -0.584 4.584 6 H 0.054 0.946 7 C -0.035 4.035 8 N -0.939 5.939 9 Si 1.119 2.881 10 H -0.274 1.274 11 H -0.268 1.268 12 H -0.290 1.290 13 N -0.639 5.639 14 C 0.057 3.943 15 H 0.081 0.919 16 C -0.110 4.110 17 C 0.105 3.895 18 N -0.601 5.601 19 C 0.129 3.871 20 C 0.458 3.542 21 O -0.547 6.547 22 O -0.507 6.507 23 C 0.485 3.515 24 O -0.575 6.575 25 H 0.048 0.952 26 H 0.022 0.978 27 H 0.067 0.933 28 H 0.043 0.957 29 H 0.058 0.942 30 H 0.253 0.747 31 H 0.326 0.674 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.132 0.868 35 H 0.072 0.928 36 H 0.179 0.821 37 H 0.120 0.880 38 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.134 11.237 14.770 21.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.157 4.157 3 C 0.098 3.902 4 H -0.018 1.018 5 C -0.622 4.622 6 H 0.073 0.927 7 C -0.232 4.232 8 N -0.577 5.577 9 Si 0.941 3.059 10 H -0.200 1.200 11 H -0.192 1.192 12 H -0.216 1.216 13 N -0.270 5.270 14 C -0.057 4.057 15 H 0.099 0.901 16 C -0.148 4.148 17 C -0.016 4.016 18 N -0.336 5.336 19 C 0.006 3.994 20 C 0.300 3.700 21 O -0.437 6.437 22 O -0.320 6.320 23 C 0.272 3.728 24 O -0.453 6.453 25 H 0.067 0.933 26 H 0.041 0.959 27 H 0.086 0.914 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.063 0.937 31 H 0.144 0.856 32 H 0.126 0.874 33 H 0.128 0.872 34 H 0.150 0.850 35 H 0.091 0.909 36 H 0.196 0.804 37 H 0.138 0.862 38 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -9.195 10.731 13.442 19.504 hybrid contribution -2.781 -0.371 -0.147 2.810 sum -11.976 10.360 13.295 20.677 Atomic orbital electron populations 1.21681 0.96464 1.01303 0.99668 1.21642 0.93995 0.99233 1.00837 1.19180 0.95359 0.90182 0.85493 1.01816 1.22239 0.91844 1.45488 1.02657 0.92728 1.27263 1.10644 0.93470 0.91860 1.70856 1.07121 1.47187 1.32491 0.82921 0.69567 0.77592 0.75808 1.20020 1.19225 1.21610 1.60964 1.36095 1.00966 1.29010 1.22440 0.92245 0.90828 1.00195 0.90095 1.22704 0.96296 1.01902 0.93898 1.22479 0.90154 1.04985 0.84007 1.48132 1.12297 1.62201 1.10930 1.21111 0.77287 0.92775 1.08220 1.24588 0.83020 0.90614 0.71758 1.90758 1.79512 1.27613 1.45840 1.84464 1.17656 1.46670 1.83260 1.22560 0.90334 0.75263 0.84643 1.90677 1.78046 1.55299 1.21296 0.93324 0.95893 0.91401 0.93836 0.92326 0.93750 0.85559 0.87425 0.87250 0.85040 0.90942 0.80388 0.86176 0.71160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.95 9.78 71.98 0.70 -5.24 16 2 C -0.12 -6.02 5.22 30.59 0.16 -5.86 16 3 C 0.21 11.14 1.50 44.17 0.07 11.20 16 4 H -0.04 -2.25 6.47 -2.39 -0.02 -2.27 16 5 C -0.58 -33.82 8.46 25.60 0.22 -33.60 16 6 H 0.05 3.12 7.83 -2.91 -0.02 3.10 16 7 C -0.04 -2.07 5.18 84.66 0.44 -1.63 16 8 N -0.94 -60.10 12.79 21.45 0.27 -59.83 16 9 Si 1.12 51.87 29.91 68.60 2.05 53.93 16 10 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 11 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 12 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 13 N -0.64 -28.06 6.08 -473.34 -2.88 -30.94 16 14 C 0.06 2.17 3.03 44.91 0.14 2.31 16 15 H 0.08 3.64 7.73 -2.39 -0.02 3.62 16 16 C -0.11 -2.58 6.89 31.65 0.22 -2.36 16 17 C 0.10 1.92 7.35 86.83 0.64 2.56 16 18 N -0.60 -15.52 2.42 -822.32 -1.99 -17.51 16 19 C 0.13 2.43 6.52 85.63 0.56 2.99 16 20 C 0.46 10.51 8.40 71.24 0.60 11.11 16 21 O -0.55 -17.67 17.19 21.96 0.38 -17.29 16 22 O -0.51 -8.04 13.42 -51.38 -0.69 -8.73 16 23 C 0.49 18.65 7.24 87.90 0.64 19.29 16 24 O -0.58 -28.13 17.01 -3.05 -0.05 -28.18 16 25 H 0.05 2.07 6.45 -2.39 -0.02 2.06 16 26 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 28 H 0.04 2.46 6.38 -2.39 -0.02 2.44 16 29 H 0.06 2.85 8.14 -2.39 -0.02 2.83 16 30 H 0.25 16.83 6.32 -92.71 -0.59 16.25 16 31 H 0.33 13.82 6.31 -89.70 -0.57 13.25 16 32 H 0.11 2.47 8.08 -2.38 -0.02 2.45 16 33 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.18 1.29 8.14 -2.38 -0.02 1.27 16 37 H 0.12 2.41 7.93 -2.39 -0.02 2.39 16 38 H 0.43 3.76 9.10 -74.06 -0.67 3.08 16 Total: -1.00 -85.43 319.30 1.50 -83.94 By element: Atomic # 1 Polarization: 23.82 SS G_CDS: 0.03 Total: 23.86 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: 4.37 Total: 0.76 kcal Atomic # 7 Polarization: -103.68 SS G_CDS: -4.60 Total: -108.28 kcal Atomic # 8 Polarization: -53.84 SS G_CDS: -0.36 Total: -54.20 kcal Atomic # 14 Polarization: 51.87 SS G_CDS: 2.05 Total: 53.93 kcal Total: -85.43 1.50 -83.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603515934.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.336 kcal (2) G-P(sol) polarization free energy of solvation -85.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds