Wall clock time and date at job start Mon Mar 30 2020 01:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47182 * 2 1 4 4 C 1.50699 * 109.46698 * 300.00102 * 3 2 1 5 5 O 1.20825 * 120.00718 * 359.97438 * 4 3 2 6 6 O 1.34231 * 120.00128 * 179.97438 * 4 3 2 7 7 N 1.46895 * 109.47248 * 119.99538 * 2 1 3 8 8 C 1.46903 * 111.00330 * 183.82115 * 7 2 1 9 9 C 1.50696 * 109.47366 * 185.38529 * 8 7 2 10 10 O 1.21297 * 120.00008 * 0.02562 * 9 8 7 11 11 N 1.34771 * 120.00229 * 179.97438 * 9 8 7 12 12 C 1.37099 * 120.00486 * 180.02562 * 11 9 8 13 13 H 1.07998 * 119.99600 * 0.02562 * 12 11 9 14 14 C 1.38947 * 120.00099 * 180.02562 * 12 11 9 15 15 N 1.31412 * 120.00150 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99794 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46988 * 89.99912 * 16 14 12 18 18 H 1.48497 * 109.46964 * 209.99658 * 16 14 12 19 19 H 1.48501 * 109.47375 * 330.00236 * 16 14 12 20 20 C 1.52999 * 109.47289 * 239.99839 * 2 1 3 21 21 C 1.53001 * 117.49384 * 9.64249 * 20 2 1 22 22 C 1.52996 * 117.49816 * 300.98631 * 20 2 1 23 23 H 1.08997 * 109.47449 * 60.00176 * 1 2 3 24 24 H 1.09004 * 109.47391 * 300.00126 * 1 2 3 25 25 H 1.09003 * 109.47269 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47061 * 59.99672 * 3 2 1 27 27 H 1.08993 * 109.47252 * 179.97438 * 3 2 1 28 28 H 0.96692 * 117.00543 * 179.97438 * 6 4 3 29 29 H 1.00901 * 110.99828 * 59.87046 * 7 2 1 30 30 H 1.09003 * 109.47075 * 305.38768 * 8 7 2 31 31 H 1.08994 * 109.46796 * 65.38749 * 8 7 2 32 32 H 0.97005 * 119.99813 * 0.02562 * 11 9 8 33 33 H 0.96999 * 119.99569 * 179.97438 * 15 14 12 34 34 H 1.09000 * 115.54872 * 155.30632 * 20 2 1 35 35 H 1.08998 * 117.50274 * 0.02562 * 21 20 2 36 36 H 1.09001 * 117.49603 * 145.02445 * 21 20 2 37 37 H 1.09000 * 117.49756 * 214.97866 * 22 20 2 38 38 H 1.09003 * 117.49864 * 359.97438 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5376 2.1528 -1.2305 5 8 0.8433 1.5656 -2.0261 6 8 1.8614 3.4381 -1.4427 7 7 2.0197 -0.6924 1.1994 8 6 3.4853 -0.6333 1.2800 9 6 3.9582 -1.4629 2.4458 10 8 3.1534 -2.0463 3.1410 11 7 5.2752 -1.5573 2.7155 12 6 5.7055 -2.3124 3.7758 13 1 4.9890 -2.8319 4.3948 14 6 7.0634 -2.4093 4.0541 15 7 7.9353 -1.7776 3.3006 16 14 7.6496 -3.4376 5.4993 17 1 7.8959 -4.8307 5.0480 18 1 8.9080 -2.8621 6.0381 19 1 6.6108 -3.4375 6.5606 20 6 2.0400 -0.7213 -1.2492 21 6 1.0140 -1.0804 -2.3259 22 6 1.6168 -2.1783 -1.4459 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.6766 1.9564 0.8900 27 1 3.1299 1.4425 0.0005 28 1 1.5160 3.8510 -2.2460 29 1 1.6944 -1.6472 1.2239 30 1 3.9159 -1.0238 0.3579 31 1 3.8001 0.4009 1.4186 32 1 5.9188 -1.0910 2.1593 33 1 8.8832 -1.8450 3.4952 34 1 3.0391 -0.4382 -1.5805 35 1 -0.0242 -0.8025 -2.1444 36 1 1.3383 -1.0341 -3.3655 37 1 2.3374 -2.8538 -1.9070 38 1 0.9753 -2.6232 -0.6852 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604088784.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:48 Heat of formation + Delta-G solvation = -95.675783 kcal Electronic energy + Delta-G solvation = -21279.142230 eV Core-core repulsion = 17929.719253 eV Total energy + Delta-G solvation = -3349.422977 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.82496 -38.99616 -37.87515 -36.09737 -34.69246 -33.84494 -31.41632 -31.05626 -28.65140 -26.28290 -24.16781 -23.53522 -22.17031 -21.73570 -19.30208 -18.54519 -18.19974 -17.87990 -16.98479 -16.15572 -15.78877 -15.64368 -14.98668 -14.83803 -14.48809 -13.96279 -13.75839 -13.48743 -12.98878 -12.63640 -12.28328 -12.27778 -12.13468 -11.90755 -11.54880 -11.48841 -11.35121 -11.08383 -11.00716 -10.71964 -10.46346 -10.38968 -10.21755 -10.09843 -9.89595 -9.50643 -8.44081 -8.07235 -7.95482 -6.41409 -3.82181 2.14497 2.92058 3.18241 3.26991 3.33041 3.84990 3.93076 4.15446 4.43954 4.52815 4.70318 4.96784 5.08987 5.15945 5.18257 5.24079 5.29793 5.41800 5.55703 5.72579 5.76452 5.81497 5.91080 5.96369 6.04170 6.05452 6.18800 6.24190 6.27911 6.34789 6.52115 7.23192 7.55657 7.66378 7.83568 8.06763 8.61398 9.18219 9.54643 10.05890 10.76339 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.028890 B = 0.004125 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.955344 B = 6786.722894 C = 7143.619209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.157 3.843 3 C -0.105 4.105 4 C 0.479 3.521 5 O -0.500 6.500 6 O -0.521 6.521 7 N -0.652 5.652 8 C 0.044 3.956 9 C 0.441 3.559 10 O -0.585 6.585 11 N -0.563 5.563 12 C -0.299 4.299 13 H 0.103 0.897 14 C 0.023 3.977 15 N -0.902 5.902 16 Si 0.930 3.070 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.269 1.269 20 C -0.182 4.182 21 C -0.146 4.146 22 C -0.185 4.185 23 H 0.086 0.914 24 H 0.060 0.940 25 H 0.056 0.944 26 H 0.115 0.885 27 H 0.107 0.893 28 H 0.407 0.593 29 H 0.357 0.643 30 H 0.049 0.951 31 H 0.086 0.914 32 H 0.392 0.608 33 H 0.271 0.729 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.268 7.801 -11.782 17.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.066 3.934 3 C -0.143 4.143 4 C 0.321 3.679 5 O -0.388 6.388 6 O -0.332 6.332 7 N -0.285 5.285 8 C -0.089 4.089 9 C 0.227 3.773 10 O -0.469 6.469 11 N -0.200 5.200 12 C -0.429 4.429 13 H 0.121 0.879 14 C -0.179 4.179 15 N -0.543 5.543 16 Si 0.757 3.243 17 H -0.204 1.204 18 H -0.209 1.209 19 H -0.194 1.194 20 C -0.202 4.202 21 C -0.183 4.183 22 C -0.222 4.222 23 H 0.104 0.896 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.133 0.867 27 H 0.125 0.875 28 H 0.265 0.735 29 H 0.178 0.822 30 H 0.067 0.933 31 H 0.104 0.896 32 H 0.225 0.775 33 H 0.081 0.919 34 H 0.114 0.886 35 H 0.120 0.880 36 H 0.101 0.899 37 H 0.109 0.891 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.727 7.588 -10.702 16.946 hybrid contribution 1.093 -0.541 -0.900 1.516 sum -9.634 7.048 -11.603 16.646 Atomic orbital electron populations 1.22184 0.93182 1.02675 1.03053 1.20169 0.95484 0.90627 0.87163 1.21455 1.03449 0.95056 0.94376 1.23448 0.77241 0.79479 0.87710 1.90675 1.35508 1.66167 1.46431 1.84565 1.72596 1.27613 1.48464 1.60432 1.08937 1.22947 1.36161 1.21754 0.88930 1.00754 0.97453 1.19812 0.83338 0.86310 0.87883 1.90523 1.53733 1.50304 1.52356 1.41856 1.05238 1.44474 1.28401 1.19705 0.91767 1.25086 1.06305 0.87925 1.25253 0.95646 0.98010 0.98986 1.69614 1.02531 1.42934 1.39262 0.85864 0.78132 0.79401 0.80938 1.20449 1.20928 1.19390 1.22982 0.99677 0.98137 0.99366 1.22876 0.99089 1.01214 0.95154 1.23007 1.04157 0.91334 1.03733 0.89594 0.92115 0.92469 0.86657 0.87461 0.73517 0.82156 0.93343 0.89624 0.77479 0.91889 0.88643 0.87967 0.89906 0.89136 0.88826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 7.10 37.16 0.26 -1.57 16 2 C 0.16 1.98 0.55 -131.60 -0.07 1.91 16 3 C -0.11 -1.18 4.51 -27.88 -0.13 -1.30 16 4 C 0.48 5.05 7.76 36.01 0.28 5.33 16 5 O -0.50 -6.02 11.75 -18.75 -0.22 -6.24 16 6 O -0.52 -4.42 13.42 -39.26 -0.53 -4.94 16 7 N -0.65 -10.30 5.80 -101.22 -0.59 -10.88 16 8 C 0.04 0.75 5.36 -4.98 -0.03 0.72 16 9 C 0.44 10.30 7.81 -10.99 -0.09 10.21 16 10 O -0.58 -15.75 15.66 5.54 0.09 -15.66 16 11 N -0.56 -14.18 5.29 -10.97 -0.06 -14.24 16 12 C -0.30 -8.32 9.68 -14.93 -0.14 -8.47 16 13 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 14 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 15 N -0.90 -24.47 13.05 55.50 0.72 -23.74 16 16 Si 0.93 21.02 29.55 -169.99 -5.02 16.00 16 17 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 18 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 19 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 20 C -0.18 -2.27 3.04 -90.62 -0.28 -2.55 16 21 C -0.15 -1.71 7.86 -26.69 -0.21 -1.92 16 22 C -0.19 -2.28 9.46 -26.70 -0.25 -2.54 16 23 H 0.09 1.02 4.48 -51.93 -0.23 0.78 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.06 0.67 7.06 -51.93 -0.37 0.31 16 26 H 0.12 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.11 1.16 6.47 -51.93 -0.34 0.82 16 28 H 0.41 1.71 9.10 45.56 0.41 2.13 16 29 H 0.36 6.10 7.41 -39.29 -0.29 5.80 16 30 H 0.05 0.78 6.86 -51.93 -0.36 0.42 16 31 H 0.09 1.33 6.56 -51.93 -0.34 0.99 16 32 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 33 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 34 H 0.10 1.23 7.84 -51.93 -0.41 0.82 16 35 H 0.10 1.20 5.75 -51.93 -0.30 0.90 16 36 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.09 1.17 7.16 -51.93 -0.37 0.79 16 LS Contribution 309.07 15.07 4.66 4.66 Total: -1.00 -31.86 309.07 -5.80 -37.67 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: -4.11 Total: 17.04 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -0.75 Total: 0.34 kcal Atomic # 7 Polarization: -48.94 SS G_CDS: 0.08 Total: -48.86 kcal Atomic # 8 Polarization: -26.19 SS G_CDS: -0.66 Total: -26.85 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.86 -5.80 -37.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604088784.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.010 kcal (2) G-P(sol) polarization free energy of solvation -31.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds