Wall clock time and date at job start Mon Mar 30 2020 01:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47182 * 2 1 4 4 C 1.50699 * 109.46698 * 300.00102 * 3 2 1 5 5 O 1.20825 * 120.00718 * 359.97438 * 4 3 2 6 6 O 1.34231 * 120.00128 * 179.97438 * 4 3 2 7 7 N 1.46895 * 109.47248 * 119.99538 * 2 1 3 8 8 C 1.46903 * 111.00330 * 183.82115 * 7 2 1 9 9 C 1.50696 * 109.47366 * 185.38529 * 8 7 2 10 10 O 1.21297 * 120.00008 * 0.02562 * 9 8 7 11 11 N 1.34771 * 120.00229 * 179.97438 * 9 8 7 12 12 C 1.37099 * 120.00486 * 180.02562 * 11 9 8 13 13 H 1.07998 * 119.99600 * 0.02562 * 12 11 9 14 14 C 1.38947 * 120.00099 * 180.02562 * 12 11 9 15 15 N 1.31412 * 120.00150 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99794 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46988 * 89.99912 * 16 14 12 18 18 H 1.48497 * 109.46964 * 209.99658 * 16 14 12 19 19 H 1.48501 * 109.47375 * 330.00236 * 16 14 12 20 20 C 1.52999 * 109.47289 * 239.99839 * 2 1 3 21 21 C 1.53001 * 117.49384 * 9.64249 * 20 2 1 22 22 C 1.52996 * 117.49816 * 300.98631 * 20 2 1 23 23 H 1.08997 * 109.47449 * 60.00176 * 1 2 3 24 24 H 1.09004 * 109.47391 * 300.00126 * 1 2 3 25 25 H 1.09003 * 109.47269 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47061 * 59.99672 * 3 2 1 27 27 H 1.08993 * 109.47252 * 179.97438 * 3 2 1 28 28 H 0.96692 * 117.00543 * 179.97438 * 6 4 3 29 29 H 1.00901 * 110.99828 * 59.87046 * 7 2 1 30 30 H 1.09003 * 109.47075 * 305.38768 * 8 7 2 31 31 H 1.08994 * 109.46796 * 65.38749 * 8 7 2 32 32 H 0.97005 * 119.99813 * 0.02562 * 11 9 8 33 33 H 0.96999 * 119.99569 * 179.97438 * 15 14 12 34 34 H 1.09000 * 115.54872 * 155.30632 * 20 2 1 35 35 H 1.08998 * 117.50274 * 0.02562 * 21 20 2 36 36 H 1.09001 * 117.49603 * 145.02445 * 21 20 2 37 37 H 1.09000 * 117.49756 * 214.97866 * 22 20 2 38 38 H 1.09003 * 117.49864 * 359.97438 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5376 2.1528 -1.2305 5 8 0.8433 1.5656 -2.0261 6 8 1.8614 3.4381 -1.4427 7 7 2.0197 -0.6924 1.1994 8 6 3.4853 -0.6333 1.2800 9 6 3.9582 -1.4629 2.4458 10 8 3.1534 -2.0463 3.1410 11 7 5.2752 -1.5573 2.7155 12 6 5.7055 -2.3124 3.7758 13 1 4.9890 -2.8319 4.3948 14 6 7.0634 -2.4093 4.0541 15 7 7.9353 -1.7776 3.3006 16 14 7.6496 -3.4376 5.4993 17 1 7.8959 -4.8307 5.0480 18 1 8.9080 -2.8621 6.0381 19 1 6.6108 -3.4375 6.5606 20 6 2.0400 -0.7213 -1.2492 21 6 1.0140 -1.0804 -2.3259 22 6 1.6168 -2.1783 -1.4459 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.6766 1.9564 0.8900 27 1 3.1299 1.4425 0.0005 28 1 1.5160 3.8510 -2.2460 29 1 1.6944 -1.6472 1.2239 30 1 3.9159 -1.0238 0.3579 31 1 3.8001 0.4009 1.4186 32 1 5.9188 -1.0910 2.1593 33 1 8.8832 -1.8450 3.4952 34 1 3.0391 -0.4382 -1.5805 35 1 -0.0242 -0.8025 -2.1444 36 1 1.3383 -1.0341 -3.3655 37 1 2.3374 -2.8538 -1.9070 38 1 0.9753 -2.6232 -0.6852 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604088784.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:47 Heat of formation + Delta-G solvation = -119.945050 kcal Electronic energy + Delta-G solvation = -21280.194625 eV Core-core repulsion = 17929.719253 eV Total energy + Delta-G solvation = -3350.475371 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.72226 -40.27183 -39.39686 -36.87455 -36.12075 -35.55816 -33.27859 -32.38493 -29.64105 -27.91106 -25.79746 -24.62398 -23.13664 -22.59216 -21.10495 -19.92314 -19.54359 -18.98874 -18.07933 -17.46088 -16.91207 -16.66278 -16.51537 -16.25064 -15.99904 -15.48014 -15.11462 -15.02639 -13.99414 -13.73612 -13.59664 -13.49688 -13.40362 -13.23629 -13.10853 -12.89140 -12.45198 -12.40200 -12.26704 -12.11548 -11.96735 -11.74847 -11.49662 -11.35104 -11.05872 -10.86154 -10.33112 -10.00145 -9.33418 -8.45425 -5.93899 1.34550 1.39000 1.43037 1.55648 2.06682 2.15725 2.31010 2.84266 3.11949 3.22161 3.55048 3.57011 3.79775 4.04220 4.13615 4.20038 4.33164 4.36854 4.53744 4.60221 4.62864 4.68650 4.78825 4.82834 4.95723 5.02865 5.11198 5.21415 5.30623 5.41966 5.42800 5.79383 5.91008 6.11770 6.36594 6.61375 7.14044 7.15004 7.57716 8.12842 8.71971 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.028890 B = 0.004125 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.955344 B = 6786.722894 C = 7143.619209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.160 3.840 3 C -0.109 4.109 4 C 0.487 3.513 5 O -0.518 6.518 6 O -0.518 6.518 7 N -0.660 5.660 8 C 0.060 3.940 9 C 0.439 3.561 10 O -0.624 6.624 11 N -0.572 5.572 12 C -0.333 4.333 13 H 0.079 0.921 14 C -0.012 4.012 15 N -0.920 5.920 16 Si 0.992 3.008 17 H -0.272 1.272 18 H -0.271 1.271 19 H -0.273 1.273 20 C -0.186 4.186 21 C -0.133 4.133 22 C -0.192 4.192 23 H 0.091 0.909 24 H 0.059 0.941 25 H 0.054 0.946 26 H 0.121 0.879 27 H 0.113 0.887 28 H 0.426 0.574 29 H 0.348 0.652 30 H 0.064 0.936 31 H 0.109 0.891 32 H 0.396 0.604 33 H 0.277 0.723 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.053 8.662 -12.478 18.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.069 3.931 3 C -0.147 4.147 4 C 0.330 3.670 5 O -0.407 6.407 6 O -0.332 6.332 7 N -0.292 5.292 8 C -0.072 4.072 9 C 0.226 3.774 10 O -0.511 6.511 11 N -0.209 5.209 12 C -0.463 4.463 13 H 0.097 0.903 14 C -0.211 4.211 15 N -0.561 5.561 16 Si 0.815 3.185 17 H -0.197 1.197 18 H -0.196 1.196 19 H -0.198 1.198 20 C -0.206 4.206 21 C -0.170 4.170 22 C -0.229 4.229 23 H 0.109 0.891 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.139 0.861 27 H 0.131 0.869 28 H 0.288 0.712 29 H 0.168 0.832 30 H 0.082 0.918 31 H 0.127 0.873 32 H 0.230 0.770 33 H 0.087 0.913 34 H 0.113 0.887 35 H 0.121 0.879 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.506 8.493 -11.436 17.700 hybrid contribution 0.977 -0.755 -0.732 1.435 sum -9.530 7.738 -12.169 17.285 Atomic orbital electron populations 1.22140 0.92634 1.02585 1.03204 1.20199 0.95817 0.91211 0.85881 1.21435 1.03822 0.94178 0.95275 1.23160 0.76782 0.79948 0.87123 1.90672 1.36351 1.66738 1.46938 1.84509 1.72376 1.26522 1.49764 1.60459 1.07809 1.22576 1.38325 1.21614 0.89973 1.00612 0.94982 1.20857 0.82360 0.85577 0.88581 1.90493 1.54571 1.51855 1.54142 1.41917 1.06126 1.44687 1.28211 1.19663 0.92137 1.26785 1.07708 0.90338 1.26009 0.95210 0.98686 1.01227 1.69669 1.02934 1.43309 1.40196 0.84948 0.77720 0.78100 0.77700 1.19718 1.19558 1.19772 1.22976 0.99921 0.98096 0.99619 1.22845 0.98876 1.00154 0.95136 1.23024 1.04391 0.91458 1.04018 0.89103 0.92201 0.92722 0.86095 0.86901 0.71206 0.83205 0.91771 0.87311 0.76974 0.91322 0.88696 0.87871 0.89386 0.89064 0.89277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.35 7.10 71.98 0.51 -2.84 16 2 C 0.16 3.80 0.55 3.53 0.00 3.80 16 3 C -0.11 -2.21 4.51 29.85 0.13 -2.08 16 4 C 0.49 9.15 7.76 71.24 0.55 9.70 16 5 O -0.52 -11.35 11.75 21.97 0.26 -11.10 16 6 O -0.52 -7.38 13.42 -51.43 -0.69 -8.07 16 7 N -0.66 -20.28 5.80 -474.16 -2.75 -23.03 16 8 C 0.06 2.01 5.36 85.56 0.46 2.47 16 9 C 0.44 20.61 7.81 87.66 0.68 21.30 16 10 O -0.62 -34.29 15.66 -3.08 -0.05 -34.34 16 11 N -0.57 -29.12 5.29 -306.99 -1.62 -30.74 16 12 C -0.33 -18.86 9.68 84.04 0.81 -18.05 16 13 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 14 C -0.01 -0.61 5.50 84.93 0.47 -0.15 16 15 N -0.92 -49.37 13.05 21.66 0.28 -49.09 16 16 Si 0.99 42.80 29.55 68.60 2.03 44.83 16 17 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 18 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 19 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 20 C -0.19 -4.38 3.04 -10.79 -0.03 -4.42 16 21 C -0.13 -2.91 7.86 30.62 0.24 -2.67 16 22 C -0.19 -4.55 9.46 30.62 0.29 -4.27 16 23 H 0.09 2.00 4.48 -2.39 -0.01 1.99 16 24 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 25 H 0.05 1.24 7.06 -2.39 -0.02 1.23 16 26 H 0.12 2.33 8.14 -2.38 -0.02 2.31 16 27 H 0.11 2.16 6.47 -2.39 -0.02 2.14 16 28 H 0.43 2.38 9.10 -74.06 -0.67 1.71 16 29 H 0.35 11.84 7.41 -89.69 -0.67 11.18 16 30 H 0.06 1.97 6.86 -2.39 -0.02 1.95 16 31 H 0.11 3.16 6.56 -2.39 -0.02 3.14 16 32 H 0.40 19.10 7.90 -92.70 -0.73 18.37 16 33 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 34 H 0.09 2.26 7.84 -2.39 -0.02 2.24 16 35 H 0.10 2.26 5.75 -2.39 -0.01 2.25 16 36 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.09 2.19 7.16 -2.39 -0.02 2.18 16 Total: -1.00 -67.71 309.07 0.63 -67.08 By element: Atomic # 1 Polarization: 42.60 SS G_CDS: -0.94 Total: 41.66 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: 4.12 Total: 2.80 kcal Atomic # 7 Polarization: -98.77 SS G_CDS: -4.09 Total: -102.86 kcal Atomic # 8 Polarization: -53.03 SS G_CDS: -0.48 Total: -53.51 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -67.71 0.63 -67.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604088784.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.868 kcal (2) G-P(sol) polarization free energy of solvation -67.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds