Wall clock time and date at job start Mon Mar 30 2020 02:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.87140 * 2 1 4 4 C 1.54324 * 110.00620 * 121.09237 * 2 1 3 5 5 H 1.08999 * 110.71913 * 23.14601 * 4 2 1 6 6 C 1.50700 * 110.72366 * 260.04464 * 4 2 1 7 7 O 1.20819 * 119.99640 * 0.02562 * 6 4 2 8 8 O 1.34227 * 120.00237 * 180.02562 * 6 4 2 9 9 C 1.55165 * 102.93785 * 141.68438 * 4 2 1 10 10 C 1.55123 * 101.48793 * 324.33550 * 9 4 2 11 11 N 1.47015 * 109.88664 * 238.98057 * 2 1 3 12 12 C 1.34783 * 125.64895 * 61.45030 * 11 2 1 13 13 O 1.21582 * 119.99742 * 0.02562 * 12 11 2 14 14 N 1.34775 * 119.99947 * 179.97438 * 12 11 2 15 15 C 1.46496 * 119.99642 * 180.02562 * 14 12 11 16 16 C 1.53006 * 109.46995 * 180.02562 * 15 14 12 17 17 C 1.50698 * 109.47184 * 180.02562 * 16 15 14 18 18 H 1.08005 * 119.99819 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00046 * 180.02562 * 17 16 15 20 20 N 1.31511 * 120.00192 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99979 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47454 * 59.99696 * 21 19 17 23 23 H 1.48506 * 109.47297 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47261 * 299.99689 * 21 19 17 25 25 H 1.08998 * 109.47007 * 179.55941 * 1 2 3 26 26 H 1.08999 * 109.47730 * 299.57007 * 1 2 3 27 27 H 1.09004 * 109.46800 * 59.56711 * 1 2 3 28 28 H 0.96694 * 117.00254 * 180.02562 * 8 6 4 29 29 H 1.09000 * 110.99885 * 82.57517 * 9 4 2 30 30 H 1.09002 * 110.99993 * 206.41894 * 9 4 2 31 31 H 1.09003 * 110.49286 * 278.45372 * 10 9 4 32 32 H 1.08992 * 110.34587 * 156.06358 * 10 9 4 33 33 H 0.96998 * 120.00166 * 0.02562 * 14 12 11 34 34 H 1.09001 * 109.47464 * 60.00642 * 15 14 12 35 35 H 1.09001 * 109.47459 * 300.00357 * 15 14 12 36 36 H 1.09001 * 109.47002 * 299.99701 * 16 15 14 37 37 H 1.08993 * 109.46955 * 60.00138 * 16 15 14 38 38 H 0.96996 * 120.00505 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0580 -0.7489 1.2418 5 1 1.3090 -1.4448 1.6198 6 6 2.4694 0.2242 2.3164 7 8 2.3592 1.4128 2.1294 8 8 2.9582 -0.2294 3.4813 9 6 3.2917 -1.5107 0.6895 10 6 2.8131 -1.8794 -0.7392 11 7 2.0301 -0.7124 -1.1848 12 6 1.8051 -0.3604 -2.4662 13 8 1.1371 0.6239 -2.7179 14 7 2.3213 -1.0988 -3.4685 15 6 2.0772 -0.7157 -4.8613 16 6 2.7685 -1.7131 -5.7932 17 6 2.5179 -1.3188 -7.2259 18 1 1.9245 -0.4445 -7.4495 19 6 3.0453 -2.0747 -8.2513 20 7 3.7674 -3.1395 -7.9791 21 14 2.7340 -1.5862 -10.0272 22 1 3.2770 -0.2253 -10.2689 23 1 3.4051 -2.5542 -10.9318 24 1 1.2730 -1.5906 -10.2931 25 1 -0.3633 -1.0276 -0.0079 26 1 -0.3634 0.5071 0.8938 27 1 -0.3633 0.5206 -0.8861 28 1 3.2082 0.4327 4.1401 29 1 4.1681 -0.8633 0.6567 30 1 3.4920 -2.4073 1.2762 31 1 2.1853 -2.7700 -0.7134 32 1 3.6682 -2.0360 -1.3967 33 1 2.8545 -1.8838 -3.2677 34 1 2.4751 0.2835 -5.0385 35 1 1.0048 -0.7197 -5.0566 36 1 3.8409 -1.7095 -5.5980 37 1 2.3703 -2.7121 -5.6160 38 1 4.1381 -3.6716 -8.7005 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604634469.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:33 Heat of formation + Delta-G solvation = -128.184471 kcal Electronic energy + Delta-G solvation = -20718.837331 eV Core-core repulsion = 17368.004672 eV Total energy + Delta-G solvation = -3350.832659 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.09371 -39.79520 -37.62187 -36.43284 -34.82083 -32.98864 -32.00151 -31.46308 -29.31068 -26.93406 -24.85563 -23.42587 -22.83168 -21.16814 -20.58290 -19.37764 -18.54389 -17.89537 -17.20363 -16.35402 -15.90874 -15.76088 -15.23714 -14.60780 -14.47148 -14.10607 -13.81340 -13.67875 -13.45297 -13.04773 -12.79534 -12.44077 -12.27307 -12.09726 -11.91374 -11.78214 -11.32923 -11.16569 -11.08337 -10.99306 -10.76696 -10.63594 -10.29700 -9.87695 -9.54027 -9.26371 -8.74255 -8.45174 -8.19382 -6.08256 -4.10841 1.81805 2.41645 2.98654 3.32517 3.36044 3.39892 3.56347 3.91653 4.08933 4.35236 4.48821 4.58297 4.85494 4.92745 4.99583 5.26848 5.28863 5.31309 5.41009 5.46766 5.60502 5.70413 5.96216 6.07622 6.19211 6.29443 6.41225 6.45376 6.78296 7.01122 7.25990 7.51087 7.56833 7.64124 7.90813 8.25930 8.38658 8.93268 8.99733 9.53836 11.03430 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.044632 B = 0.003251 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.195022 B = 8610.395627 C = 8962.740490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.165 3.835 3 H 0.093 0.907 4 C -0.095 4.095 5 H 0.125 0.875 6 C 0.490 3.510 7 O -0.506 6.506 8 O -0.514 6.514 9 C -0.116 4.116 10 C 0.098 3.902 11 N -0.640 5.640 12 C 0.719 3.281 13 O -0.589 6.589 14 N -0.736 5.736 15 C 0.140 3.860 16 C 0.014 3.986 17 C -0.521 4.521 18 H 0.059 0.941 19 C 0.059 3.941 20 N -0.895 5.895 21 Si 0.897 3.103 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.276 1.276 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.080 0.920 28 H 0.412 0.588 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.392 0.608 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.022 0.978 37 H 0.022 0.978 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.788 0.031 23.153 23.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.061 3.939 3 H 0.111 0.889 4 C -0.115 4.115 5 H 0.143 0.857 6 C 0.332 3.668 7 O -0.393 6.393 8 O -0.326 6.326 9 C -0.154 4.154 10 C -0.025 4.025 11 N -0.381 5.381 12 C 0.421 3.579 13 O -0.467 6.467 14 N -0.390 5.390 15 C 0.017 3.983 16 C -0.024 4.024 17 C -0.560 4.560 18 H 0.078 0.922 19 C -0.143 4.143 20 N -0.534 5.534 21 Si 0.725 3.275 22 H -0.201 1.201 23 H -0.213 1.213 24 H -0.201 1.201 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.099 0.901 28 H 0.271 0.729 29 H 0.101 0.899 30 H 0.116 0.884 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.226 0.774 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.040 0.960 37 H 0.040 0.960 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.346 0.693 22.375 22.426 hybrid contribution 0.355 0.154 -0.374 0.538 sum -0.991 0.847 22.001 22.039 Atomic orbital electron populations 1.22168 0.94142 1.02295 1.03455 1.21154 0.94866 0.96598 0.81324 0.88868 1.22105 1.00701 0.96696 0.91980 0.85706 1.23020 0.73304 0.88573 0.81943 1.90763 1.50583 1.18220 1.79687 1.84514 1.75801 1.45643 1.26646 1.22804 0.95977 1.00961 0.95701 1.22335 0.95877 0.89512 0.94802 1.47623 1.56751 1.29712 1.03967 1.15512 0.80387 0.83060 0.78924 1.90889 1.44802 1.28608 1.82397 1.45557 1.56122 1.30754 1.06525 1.21616 1.00364 0.99762 0.76544 1.19314 0.95874 0.93852 0.93319 1.21019 1.32904 1.11645 0.90416 0.92249 1.24987 0.94948 0.94885 0.99438 1.69941 1.34481 1.16371 1.32612 0.86568 0.78541 0.78339 0.84056 1.20104 1.21265 1.20100 0.92449 0.92010 0.90128 0.72944 0.89878 0.88352 0.90816 0.89943 0.77404 0.92733 0.92713 0.96008 0.95983 0.92811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.95 9.11 37.16 0.34 -1.62 16 2 C 0.16 2.03 2.88 -66.96 -0.19 1.84 16 3 H 0.09 1.39 6.81 -51.93 -0.35 1.04 16 4 C -0.10 -0.80 2.98 -89.93 -0.27 -1.06 16 5 H 0.13 0.78 7.85 -51.93 -0.41 0.37 16 6 C 0.49 4.43 7.63 36.01 0.27 4.71 16 7 O -0.51 -6.42 16.18 -18.74 -0.30 -6.72 16 8 O -0.51 -3.12 13.42 -39.25 -0.53 -3.65 16 9 C -0.12 -0.83 6.53 -24.46 -0.16 -0.99 16 10 C 0.10 0.92 6.59 -2.41 -0.02 0.90 16 11 N -0.64 -8.78 3.06 -168.56 -0.52 -9.30 16 12 C 0.72 13.16 8.28 -86.91 -0.72 12.44 16 13 O -0.59 -13.02 15.37 5.29 0.08 -12.94 16 14 N -0.74 -13.39 5.52 -65.22 -0.36 -13.75 16 15 C 0.14 3.05 5.61 -4.04 -0.02 3.02 16 16 C 0.01 0.35 5.09 -27.88 -0.14 0.21 16 17 C -0.52 -14.53 9.11 -34.44 -0.31 -14.85 16 18 H 0.06 1.62 7.74 -52.48 -0.41 1.22 16 19 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 20 N -0.90 -26.13 13.29 55.43 0.74 -25.39 16 21 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.08 1.23 6.87 -51.93 -0.36 0.87 16 28 H 0.41 0.89 9.10 45.56 0.41 1.31 16 29 H 0.08 0.64 8.04 -51.93 -0.42 0.22 16 30 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.74 7.29 -51.93 -0.38 0.37 16 33 H 0.39 6.17 6.95 -40.82 -0.28 5.88 16 34 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 321.05 15.07 4.84 4.84 Total: -1.00 -35.05 321.05 -7.10 -42.14 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -4.71 Total: 2.16 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: -1.32 Total: 6.17 kcal Atomic # 7 Polarization: -48.30 SS G_CDS: -0.14 Total: -48.44 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -0.75 Total: -23.30 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -35.05 -7.10 -42.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604634469.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.041 kcal (2) G-P(sol) polarization free energy of solvation -35.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds