Wall clock time and date at job start Mon Mar 30 2020 02:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.87140 * 2 1 4 4 C 1.54324 * 110.00620 * 121.09237 * 2 1 3 5 5 H 1.08999 * 110.71913 * 23.14601 * 4 2 1 6 6 C 1.50700 * 110.72366 * 260.04464 * 4 2 1 7 7 O 1.20819 * 119.99640 * 0.02562 * 6 4 2 8 8 O 1.34227 * 120.00237 * 180.02562 * 6 4 2 9 9 C 1.55165 * 102.93785 * 141.68438 * 4 2 1 10 10 C 1.55123 * 101.48793 * 324.33550 * 9 4 2 11 11 N 1.47015 * 109.88664 * 238.98057 * 2 1 3 12 12 C 1.34783 * 125.64895 * 61.45030 * 11 2 1 13 13 O 1.21582 * 119.99742 * 0.02562 * 12 11 2 14 14 N 1.34775 * 119.99947 * 179.97438 * 12 11 2 15 15 C 1.46496 * 119.99642 * 180.02562 * 14 12 11 16 16 C 1.53006 * 109.46995 * 180.02562 * 15 14 12 17 17 C 1.50698 * 109.47184 * 180.02562 * 16 15 14 18 18 H 1.08005 * 119.99819 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00046 * 180.02562 * 17 16 15 20 20 N 1.31511 * 120.00192 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99979 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47454 * 59.99696 * 21 19 17 23 23 H 1.48506 * 109.47297 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47261 * 299.99689 * 21 19 17 25 25 H 1.08998 * 109.47007 * 179.55941 * 1 2 3 26 26 H 1.08999 * 109.47730 * 299.57007 * 1 2 3 27 27 H 1.09004 * 109.46800 * 59.56711 * 1 2 3 28 28 H 0.96694 * 117.00254 * 180.02562 * 8 6 4 29 29 H 1.09000 * 110.99885 * 82.57517 * 9 4 2 30 30 H 1.09002 * 110.99993 * 206.41894 * 9 4 2 31 31 H 1.09003 * 110.49286 * 278.45372 * 10 9 4 32 32 H 1.08992 * 110.34587 * 156.06358 * 10 9 4 33 33 H 0.96998 * 120.00166 * 0.02562 * 14 12 11 34 34 H 1.09001 * 109.47464 * 60.00642 * 15 14 12 35 35 H 1.09001 * 109.47459 * 300.00357 * 15 14 12 36 36 H 1.09001 * 109.47002 * 299.99701 * 16 15 14 37 37 H 1.08993 * 109.46955 * 60.00138 * 16 15 14 38 38 H 0.96996 * 120.00505 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0580 -0.7489 1.2418 5 1 1.3090 -1.4448 1.6198 6 6 2.4694 0.2242 2.3164 7 8 2.3592 1.4128 2.1294 8 8 2.9582 -0.2294 3.4813 9 6 3.2917 -1.5107 0.6895 10 6 2.8131 -1.8794 -0.7392 11 7 2.0301 -0.7124 -1.1848 12 6 1.8051 -0.3604 -2.4662 13 8 1.1371 0.6239 -2.7179 14 7 2.3213 -1.0988 -3.4685 15 6 2.0772 -0.7157 -4.8613 16 6 2.7685 -1.7131 -5.7932 17 6 2.5179 -1.3188 -7.2259 18 1 1.9245 -0.4445 -7.4495 19 6 3.0453 -2.0747 -8.2513 20 7 3.7674 -3.1395 -7.9791 21 14 2.7340 -1.5862 -10.0272 22 1 3.2770 -0.2253 -10.2689 23 1 3.4051 -2.5542 -10.9318 24 1 1.2730 -1.5906 -10.2931 25 1 -0.3633 -1.0276 -0.0079 26 1 -0.3634 0.5071 0.8938 27 1 -0.3633 0.5206 -0.8861 28 1 3.2082 0.4327 4.1401 29 1 4.1681 -0.8633 0.6567 30 1 3.4920 -2.4073 1.2762 31 1 2.1853 -2.7700 -0.7134 32 1 3.6682 -2.0360 -1.3967 33 1 2.8545 -1.8838 -3.2677 34 1 2.4751 0.2835 -5.0385 35 1 1.0048 -0.7197 -5.0566 36 1 3.8409 -1.7095 -5.5980 37 1 2.3703 -2.7121 -5.6160 38 1 4.1381 -3.6716 -8.7005 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604634469.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:32 Heat of formation + Delta-G solvation = -154.160941 kcal Electronic energy + Delta-G solvation = -20719.963756 eV Core-core repulsion = 17368.004672 eV Total energy + Delta-G solvation = -3351.959084 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.95257 -40.90920 -38.72716 -37.10582 -36.56992 -34.88425 -33.23779 -32.35925 -31.08606 -27.85874 -26.69609 -24.47373 -23.73576 -22.85046 -21.62506 -20.57042 -19.45081 -18.81854 -18.48905 -18.00626 -16.94942 -16.74993 -16.61283 -16.45687 -15.75716 -15.31003 -15.02410 -14.77303 -14.53379 -14.25986 -14.16081 -13.73921 -13.38873 -13.22877 -12.93471 -12.87949 -12.68338 -12.57323 -12.51589 -12.23123 -12.07718 -11.85993 -11.65621 -11.53303 -11.48422 -11.16220 -10.59284 -10.18491 -9.52608 -8.23308 -6.33487 1.13825 1.40742 1.44835 1.45127 1.53415 2.08581 2.16833 2.41749 3.01467 3.11450 3.25843 3.40446 3.92904 4.13437 4.17368 4.31607 4.41113 4.47231 4.51091 4.53909 4.66766 4.68443 4.85862 4.96030 4.99856 5.07753 5.20109 5.27760 5.38999 5.51878 5.59649 5.59755 5.79760 6.01593 6.18005 6.79014 6.96432 6.99167 7.35613 7.55165 8.88444 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.044632 B = 0.003251 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.195022 B = 8610.395627 C = 8962.740490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.157 3.843 3 H 0.059 0.941 4 C -0.085 4.085 5 H 0.158 0.842 6 C 0.499 3.501 7 O -0.551 6.551 8 O -0.501 6.501 9 C -0.104 4.104 10 C 0.087 3.913 11 N -0.636 5.636 12 C 0.714 3.286 13 O -0.635 6.635 14 N -0.730 5.730 15 C 0.161 3.839 16 C 0.027 3.973 17 C -0.549 4.549 18 H 0.058 0.942 19 C 0.009 3.991 20 N -0.925 5.925 21 Si 0.964 3.036 22 H -0.270 1.270 23 H -0.279 1.279 24 H -0.269 1.269 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.040 0.960 28 H 0.430 0.570 29 H 0.076 0.924 30 H 0.138 0.862 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.406 0.594 34 H 0.041 0.959 35 H 0.043 0.957 36 H 0.009 0.991 37 H 0.011 0.989 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.490 -1.410 24.600 24.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.053 3.947 3 H 0.078 0.922 4 C -0.104 4.104 5 H 0.176 0.824 6 C 0.342 3.658 7 O -0.441 6.441 8 O -0.314 6.314 9 C -0.141 4.141 10 C -0.034 4.034 11 N -0.374 5.374 12 C 0.416 3.584 13 O -0.517 6.517 14 N -0.385 5.385 15 C 0.036 3.964 16 C -0.011 4.011 17 C -0.587 4.587 18 H 0.076 0.924 19 C -0.190 4.190 20 N -0.565 5.565 21 Si 0.789 3.211 22 H -0.195 1.195 23 H -0.205 1.205 24 H -0.194 1.194 25 H 0.094 0.906 26 H 0.096 0.904 27 H 0.059 0.941 28 H 0.292 0.708 29 H 0.095 0.905 30 H 0.156 0.844 31 H 0.116 0.884 32 H 0.104 0.896 33 H 0.242 0.758 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.027 0.973 37 H 0.029 0.971 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.013 -0.793 23.907 23.941 hybrid contribution 0.294 0.588 -0.705 0.964 sum -0.719 -0.205 23.201 23.213 Atomic orbital electron populations 1.22090 0.94009 1.03015 1.02315 1.21225 0.95107 0.95684 0.82669 0.92245 1.22061 1.01998 0.96376 0.90003 0.82433 1.23055 0.72410 0.87788 0.82576 1.90769 1.52629 1.20117 1.80609 1.84462 1.74889 1.46047 1.26002 1.22839 0.94837 1.02169 0.94302 1.22738 0.95961 0.88521 0.96208 1.47599 1.56326 1.30854 1.02623 1.15634 0.80018 0.82459 0.80268 1.90854 1.46718 1.30539 1.83548 1.45213 1.56595 1.31402 1.05271 1.21091 0.99037 0.98109 0.78115 1.19103 0.95093 0.93831 0.93063 1.21434 1.33234 1.11903 0.92133 0.92412 1.25840 0.94530 0.94757 1.03860 1.70038 1.35120 1.17229 1.34083 0.85515 0.78715 0.78232 0.78686 1.19479 1.20454 1.19362 0.90628 0.90404 0.94054 0.70774 0.90532 0.84423 0.88392 0.89633 0.75819 0.94106 0.93809 0.97298 0.97101 0.92488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.71 9.11 71.98 0.66 -3.05 16 2 C 0.16 3.80 2.88 45.34 0.13 3.93 16 3 H 0.06 1.86 6.81 -2.38 -0.02 1.84 16 4 C -0.09 -1.17 2.98 -10.35 -0.03 -1.21 16 5 H 0.16 1.22 7.85 -2.39 -0.02 1.20 16 6 C 0.50 7.93 7.63 71.24 0.54 8.47 16 7 O -0.55 -13.75 16.18 21.98 0.36 -13.39 16 8 O -0.50 -4.39 13.42 -51.39 -0.69 -5.08 16 9 C -0.10 -1.11 6.53 32.06 0.21 -0.90 16 10 C 0.09 1.40 6.59 86.93 0.57 1.97 16 11 N -0.64 -17.03 3.06 -805.47 -2.47 -19.50 16 12 C 0.71 26.62 8.28 179.05 1.48 28.11 16 13 O -0.63 -29.33 15.37 -3.97 -0.06 -29.39 16 14 N -0.73 -26.85 5.52 -478.53 -2.64 -29.49 16 15 C 0.16 7.20 5.61 86.38 0.48 7.69 16 16 C 0.03 1.36 5.09 29.85 0.15 1.51 16 17 C -0.55 -30.97 9.11 25.60 0.23 -30.73 16 18 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 19 C 0.01 0.51 5.46 84.65 0.46 0.97 16 20 N -0.93 -54.09 13.29 21.45 0.28 -53.80 16 21 Si 0.96 43.81 29.54 68.60 2.03 45.83 16 22 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 23 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 24 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 25 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.04 1.31 6.87 -2.39 -0.02 1.29 16 28 H 0.43 0.59 9.10 -74.06 -0.67 -0.08 16 29 H 0.08 0.96 8.04 -2.39 -0.02 0.94 16 30 H 0.14 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.09 1.35 7.29 -2.39 -0.02 1.33 16 33 H 0.41 12.59 6.95 -92.71 -0.64 11.94 16 34 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 37 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 Total: -1.00 -78.40 321.05 1.47 -76.93 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -0.23 Total: 11.15 kcal Atomic # 6 Polarization: 11.86 SS G_CDS: 4.90 Total: 16.76 kcal Atomic # 7 Polarization: -97.97 SS G_CDS: -4.82 Total: -102.80 kcal Atomic # 8 Polarization: -47.47 SS G_CDS: -0.40 Total: -47.87 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Total: -78.40 1.47 -76.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604634469.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.236 kcal (2) G-P(sol) polarization free energy of solvation -78.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds