Wall clock time and date at job start Mon Mar 30 2020 02:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 110.00265 * 2 1 4 4 C 1.54337 * 109.78131 * 121.16074 * 2 1 3 5 5 H 1.09002 * 110.67137 * 215.88023 * 4 2 1 6 6 C 1.50699 * 110.84913 * 339.03101 * 4 2 1 7 7 O 1.20834 * 119.99697 * 90.14543 * 6 4 2 8 8 O 1.34223 * 120.00154 * 270.14690 * 6 4 2 9 9 C 1.55163 * 103.01989 * 97.49668 * 4 2 1 10 10 C 1.54910 * 101.57932 * 35.30828 * 9 4 2 11 11 N 1.47023 * 109.88331 * 238.89981 * 2 1 3 12 12 C 1.34782 * 125.64393 * 59.56192 * 11 2 1 13 13 O 1.21582 * 120.00262 * 359.71749 * 12 11 2 14 14 N 1.34772 * 119.99445 * 179.71255 * 12 11 2 15 15 C 1.46508 * 119.99614 * 179.97438 * 14 12 11 16 16 C 1.53002 * 109.47053 * 180.02562 * 15 14 12 17 17 C 1.50694 * 109.46923 * 180.02562 * 16 15 14 18 18 H 1.08002 * 120.00667 * 359.97438 * 17 16 15 19 19 C 1.37887 * 120.00138 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00185 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 119.99619 * 359.97438 * 19 17 16 22 22 H 1.48509 * 109.47281 * 270.00137 * 21 19 17 23 23 H 1.48502 * 109.47090 * 150.00212 * 21 19 17 24 24 H 1.48501 * 109.47170 * 29.99955 * 21 19 17 25 25 H 1.09006 * 109.47188 * 182.85023 * 1 2 3 26 26 H 1.08998 * 109.47160 * 302.84806 * 1 2 3 27 27 H 1.09000 * 109.47160 * 62.85068 * 1 2 3 28 28 H 0.96707 * 117.00270 * 179.97438 * 8 6 4 29 29 H 1.09000 * 111.00501 * 277.23937 * 9 4 2 30 30 H 1.08996 * 111.03610 * 153.39507 * 9 4 2 31 31 H 1.09005 * 110.36567 * 204.15169 * 10 9 4 32 32 H 1.09005 * 110.45899 * 81.87650 * 10 9 4 33 33 H 0.96995 * 120.00706 * 0.02562 * 14 12 11 34 34 H 1.09000 * 109.46843 * 60.00921 * 15 14 12 35 35 H 1.08997 * 109.47328 * 300.00376 * 15 14 12 36 36 H 1.08994 * 109.46935 * 60.00266 * 16 15 14 37 37 H 1.08997 * 109.47156 * 300.00230 * 16 15 14 38 38 H 0.96998 * 119.99717 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0523 -0.7515 1.2428 5 1 2.9601 -0.2826 1.6226 6 6 0.9964 -0.8117 2.3163 7 8 0.2223 -1.7389 2.3510 8 8 0.9156 0.1647 3.2338 9 6 2.3562 -2.1697 0.6916 10 6 2.8613 -1.8465 -0.7368 11 7 2.0300 -0.7142 -1.1839 12 6 1.7753 -0.3845 -2.4657 13 8 1.0729 0.5751 -2.7186 14 7 2.2994 -1.1187 -3.4670 15 6 2.0221 -0.7608 -4.8604 16 6 2.7304 -1.7473 -5.7910 17 6 2.4457 -1.3788 -7.2242 18 1 1.8216 -0.5265 -7.4489 19 6 2.9811 -2.1304 -8.2488 20 7 2.7330 -1.8085 -9.4995 21 14 4.0598 -3.6051 -7.8601 22 1 5.4774 -3.1715 -7.7705 23 1 3.9193 -4.6185 -8.9364 24 1 3.6405 -4.1974 -6.5645 25 1 -0.3634 -1.0264 0.0511 26 1 -0.3633 0.5574 0.8633 27 1 -0.3633 0.4689 -0.9144 28 1 0.2218 0.0827 3.9024 29 1 1.4522 -2.7778 0.6580 30 1 3.1326 -2.6597 1.2790 31 1 2.7178 -2.7049 -1.3931 32 1 3.9126 -1.5594 -0.7132 33 1 2.8595 -1.8845 -3.2653 34 1 2.3856 0.2481 -5.0555 35 1 0.9476 -0.8008 -5.0389 36 1 2.3666 -2.7561 -5.5957 37 1 3.8049 -1.7077 -5.6126 38 1 3.1093 -2.3375 -10.2202 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604634470.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:36 Heat of formation + Delta-G solvation = -122.891215 kcal Electronic energy + Delta-G solvation = -20883.481902 eV Core-core repulsion = 17532.878775 eV Total energy + Delta-G solvation = -3350.603127 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.26137 -39.86082 -37.71700 -36.40699 -34.97570 -33.01108 -32.09505 -31.43390 -29.82504 -26.95688 -25.08838 -23.59711 -23.07595 -20.87019 -20.35079 -19.62238 -18.45367 -17.93184 -17.11326 -16.87832 -16.26891 -15.72865 -15.64556 -14.70778 -14.30041 -14.14844 -13.85598 -13.58887 -13.47780 -13.10909 -12.86245 -12.60693 -12.52424 -12.39686 -11.92159 -11.80277 -11.46891 -11.29260 -11.21950 -11.17468 -10.80710 -10.38838 -10.24755 -9.97455 -9.74769 -9.32255 -8.86085 -8.62049 -8.35732 -6.10636 -4.10653 1.76732 2.42695 2.86350 3.25168 3.32757 3.34085 3.44283 3.90933 4.02149 4.34250 4.37906 4.56699 4.72421 4.88769 4.92466 5.12978 5.22264 5.25035 5.32282 5.38658 5.49937 5.73415 5.81808 5.98242 6.09485 6.17718 6.24538 6.31309 6.58007 6.79933 7.05283 7.24227 7.26728 7.50454 7.67606 8.20089 8.45408 8.85205 8.94330 9.49407 11.02466 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.040858 B = 0.003543 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.133498 B = 7901.389366 C = 8336.981164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.174 3.826 3 H 0.087 0.913 4 C -0.097 4.097 5 H 0.119 0.881 6 C 0.497 3.503 7 O -0.508 6.508 8 O -0.515 6.515 9 C -0.118 4.118 10 C 0.099 3.901 11 N -0.639 5.639 12 C 0.721 3.279 13 O -0.586 6.586 14 N -0.739 5.739 15 C 0.148 3.852 16 C -0.021 4.021 17 C -0.522 4.522 18 H 0.076 0.924 19 C 0.069 3.931 20 N -0.899 5.899 21 Si 0.882 3.118 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.266 1.266 25 H 0.064 0.936 26 H 0.058 0.942 27 H 0.085 0.915 28 H 0.411 0.589 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.391 0.609 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.021 0.979 37 H 0.017 0.983 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.189 -0.304 26.453 26.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.070 3.930 3 H 0.105 0.895 4 C -0.117 4.117 5 H 0.137 0.863 6 C 0.338 3.662 7 O -0.395 6.395 8 O -0.327 6.327 9 C -0.156 4.156 10 C -0.024 4.024 11 N -0.379 5.379 12 C 0.423 3.577 13 O -0.464 6.464 14 N -0.393 5.393 15 C 0.025 3.975 16 C -0.059 4.059 17 C -0.560 4.560 18 H 0.094 0.906 19 C -0.133 4.133 20 N -0.537 5.537 21 Si 0.710 3.290 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.191 1.191 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.104 0.896 28 H 0.270 0.730 29 H 0.114 0.886 30 H 0.110 0.890 31 H 0.100 0.900 32 H 0.091 0.909 33 H 0.225 0.775 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.040 0.960 37 H 0.035 0.965 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.768 0.171 25.625 25.638 hybrid contribution 0.453 -1.250 0.638 1.475 sum 1.222 -1.079 26.263 26.314 Atomic orbital electron populations 1.22367 0.94456 1.02991 1.03665 1.21041 0.94932 0.95466 0.81606 0.89475 1.22139 0.97327 1.00176 0.92046 0.86330 1.22862 0.83778 0.78851 0.80673 1.90740 1.41371 1.34528 1.72844 1.84547 1.57564 1.49352 1.41232 1.22842 1.03528 0.94100 0.95125 1.22299 0.95198 0.89906 0.95025 1.47606 1.54383 1.32085 1.03842 1.15472 0.80537 0.82828 0.78885 1.90899 1.43044 1.30125 1.82342 1.45553 1.54410 1.32677 1.06611 1.21407 1.00476 0.99629 0.75938 1.19791 0.95569 0.94880 0.95656 1.20917 1.32220 1.15015 0.87891 0.90565 1.25003 0.96015 0.97401 0.94883 1.69904 1.45031 1.39988 0.98772 0.86747 0.81089 0.82878 0.78314 1.20232 1.21284 1.19104 0.91680 0.92319 0.89564 0.72982 0.88577 0.88953 0.90049 0.90867 0.77536 0.92048 0.92075 0.96047 0.96468 0.92550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.16 8.11 37.16 0.30 -1.86 16 2 C 0.17 1.91 3.44 -66.95 -0.23 1.68 16 3 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 4 C -0.10 -0.76 3.37 -89.93 -0.30 -1.07 16 5 H 0.12 0.66 8.14 -51.93 -0.42 0.24 16 6 C 0.50 4.28 5.46 36.01 0.20 4.48 16 7 O -0.51 -5.81 15.76 -18.76 -0.30 -6.10 16 8 O -0.51 -3.24 13.42 -39.24 -0.53 -3.77 16 9 C -0.12 -0.88 6.39 -24.58 -0.16 -1.03 16 10 C 0.10 0.87 6.57 -2.53 -0.02 0.85 16 11 N -0.64 -8.12 3.08 -168.68 -0.52 -8.64 16 12 C 0.72 12.36 8.27 -86.92 -0.72 11.64 16 13 O -0.59 -12.25 15.18 5.29 0.08 -12.17 16 14 N -0.74 -12.51 5.52 -65.22 -0.36 -12.87 16 15 C 0.15 3.06 5.61 -4.04 -0.02 3.04 16 16 C -0.02 -0.48 4.16 -27.88 -0.12 -0.60 16 17 C -0.52 -14.63 9.66 -34.44 -0.33 -14.96 16 18 H 0.08 2.32 7.99 -52.49 -0.42 1.90 16 19 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 20 N -0.90 -27.37 13.96 55.43 0.77 -26.60 16 21 Si 0.88 20.97 27.47 -169.99 -4.67 16.30 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 24 H -0.27 -5.96 6.54 56.52 0.37 -5.59 16 25 H 0.06 0.85 7.45 -51.93 -0.39 0.46 16 26 H 0.06 0.61 7.25 -51.93 -0.38 0.24 16 27 H 0.09 1.30 6.64 -51.93 -0.34 0.95 16 28 H 0.41 0.94 9.10 45.56 0.41 1.36 16 29 H 0.10 0.88 7.22 -51.93 -0.37 0.51 16 30 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.68 7.30 -51.93 -0.38 0.31 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.39 5.55 6.95 -40.82 -0.28 5.27 16 34 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 35 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 37 H 0.02 0.38 7.57 -51.93 -0.39 -0.02 16 38 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 313.49 15.07 4.72 4.72 Total: -1.00 -35.22 313.49 -6.91 -42.13 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -4.62 Total: 2.97 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: -1.50 Total: 4.04 kcal Atomic # 7 Polarization: -48.01 SS G_CDS: -0.11 Total: -48.11 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -0.74 Total: -22.05 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.67 Total: 16.30 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -35.22 -6.91 -42.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604634470.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.757 kcal (2) G-P(sol) polarization free energy of solvation -35.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds