Wall clock time and date at job start Mon Mar 30 2020 02:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 110.00265 * 2 1 4 4 C 1.54337 * 109.78131 * 121.16074 * 2 1 3 5 5 H 1.09002 * 110.67137 * 215.88023 * 4 2 1 6 6 C 1.50699 * 110.84913 * 339.03101 * 4 2 1 7 7 O 1.20834 * 119.99697 * 90.14543 * 6 4 2 8 8 O 1.34223 * 120.00154 * 270.14690 * 6 4 2 9 9 C 1.55163 * 103.01989 * 97.49668 * 4 2 1 10 10 C 1.54910 * 101.57932 * 35.30828 * 9 4 2 11 11 N 1.47023 * 109.88331 * 238.89981 * 2 1 3 12 12 C 1.34782 * 125.64393 * 59.56192 * 11 2 1 13 13 O 1.21582 * 120.00262 * 359.71749 * 12 11 2 14 14 N 1.34772 * 119.99445 * 179.71255 * 12 11 2 15 15 C 1.46508 * 119.99614 * 179.97438 * 14 12 11 16 16 C 1.53002 * 109.47053 * 180.02562 * 15 14 12 17 17 C 1.50694 * 109.46923 * 180.02562 * 16 15 14 18 18 H 1.08002 * 120.00667 * 359.97438 * 17 16 15 19 19 C 1.37887 * 120.00138 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00185 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 119.99619 * 359.97438 * 19 17 16 22 22 H 1.48509 * 109.47281 * 270.00137 * 21 19 17 23 23 H 1.48502 * 109.47090 * 150.00212 * 21 19 17 24 24 H 1.48501 * 109.47170 * 29.99955 * 21 19 17 25 25 H 1.09006 * 109.47188 * 182.85023 * 1 2 3 26 26 H 1.08998 * 109.47160 * 302.84806 * 1 2 3 27 27 H 1.09000 * 109.47160 * 62.85068 * 1 2 3 28 28 H 0.96707 * 117.00270 * 179.97438 * 8 6 4 29 29 H 1.09000 * 111.00501 * 277.23937 * 9 4 2 30 30 H 1.08996 * 111.03610 * 153.39507 * 9 4 2 31 31 H 1.09005 * 110.36567 * 204.15169 * 10 9 4 32 32 H 1.09005 * 110.45899 * 81.87650 * 10 9 4 33 33 H 0.96995 * 120.00706 * 0.02562 * 14 12 11 34 34 H 1.09000 * 109.46843 * 60.00921 * 15 14 12 35 35 H 1.08997 * 109.47328 * 300.00376 * 15 14 12 36 36 H 1.08994 * 109.46935 * 60.00266 * 16 15 14 37 37 H 1.08997 * 109.47156 * 300.00230 * 16 15 14 38 38 H 0.96998 * 119.99717 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0523 -0.7515 1.2428 5 1 2.9601 -0.2826 1.6226 6 6 0.9964 -0.8117 2.3163 7 8 0.2223 -1.7389 2.3510 8 8 0.9156 0.1647 3.2338 9 6 2.3562 -2.1697 0.6916 10 6 2.8613 -1.8465 -0.7368 11 7 2.0300 -0.7142 -1.1839 12 6 1.7753 -0.3845 -2.4657 13 8 1.0729 0.5751 -2.7186 14 7 2.2994 -1.1187 -3.4670 15 6 2.0221 -0.7608 -4.8604 16 6 2.7304 -1.7473 -5.7910 17 6 2.4457 -1.3788 -7.2242 18 1 1.8216 -0.5265 -7.4489 19 6 2.9811 -2.1304 -8.2488 20 7 2.7330 -1.8085 -9.4995 21 14 4.0598 -3.6051 -7.8601 22 1 5.4774 -3.1715 -7.7705 23 1 3.9193 -4.6185 -8.9364 24 1 3.6405 -4.1974 -6.5645 25 1 -0.3634 -1.0264 0.0511 26 1 -0.3633 0.5574 0.8633 27 1 -0.3633 0.4689 -0.9144 28 1 0.2218 0.0827 3.9024 29 1 1.4522 -2.7778 0.6580 30 1 3.1326 -2.6597 1.2790 31 1 2.7178 -2.7049 -1.3931 32 1 3.9126 -1.5594 -0.7132 33 1 2.8595 -1.8845 -3.2653 34 1 2.3856 0.2481 -5.0555 35 1 0.9476 -0.8008 -5.0389 36 1 2.3666 -2.7561 -5.5957 37 1 3.8049 -1.7077 -5.6126 38 1 3.1093 -2.3375 -10.2202 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604634470.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:35 Heat of formation + Delta-G solvation = -149.942161 kcal Electronic energy + Delta-G solvation = -20884.654919 eV Core-core repulsion = 17532.878775 eV Total energy + Delta-G solvation = -3351.776144 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.05584 -40.90452 -38.72448 -37.05635 -36.60730 -34.86265 -33.36898 -32.26675 -31.51402 -27.83474 -26.79778 -24.55785 -23.96783 -22.63607 -21.28297 -20.66424 -19.27533 -18.95586 -18.86686 -17.78344 -17.12928 -16.91373 -16.78388 -16.23250 -15.84115 -15.45594 -15.13783 -14.72954 -14.54357 -14.37957 -14.05036 -13.66438 -13.48797 -13.34431 -13.20380 -13.01526 -12.68749 -12.46410 -12.16638 -12.15847 -12.04221 -11.85535 -11.74799 -11.53361 -11.51739 -11.20572 -10.77671 -10.21111 -9.56137 -8.28900 -6.36356 1.08132 1.40252 1.43418 1.49803 1.54662 2.07376 2.18030 2.38343 3.00985 3.06190 3.32065 3.38804 3.86856 4.07767 4.20396 4.26705 4.30995 4.35157 4.45076 4.48149 4.63417 4.66748 4.76013 4.85708 4.92419 5.10489 5.12805 5.16838 5.34883 5.41953 5.44892 5.61843 5.67031 5.99664 6.24075 6.70922 6.97220 6.99495 7.28108 7.54497 8.88046 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.040858 B = 0.003543 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.133498 B = 7901.389366 C = 8336.981164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.167 3.833 3 H 0.088 0.912 4 C -0.088 4.088 5 H 0.152 0.848 6 C 0.501 3.499 7 O -0.540 6.540 8 O -0.509 6.509 9 C -0.110 4.110 10 C 0.091 3.909 11 N -0.634 5.634 12 C 0.716 3.284 13 O -0.633 6.633 14 N -0.729 5.729 15 C 0.165 3.835 16 C -0.010 4.010 17 C -0.539 4.539 18 H 0.028 0.972 19 C 0.003 3.997 20 N -0.952 5.952 21 Si 0.961 3.039 22 H -0.263 1.263 23 H -0.288 1.288 24 H -0.236 1.236 25 H 0.053 0.947 26 H 0.074 0.926 27 H 0.051 0.949 28 H 0.429 0.571 29 H 0.076 0.924 30 H 0.127 0.873 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.408 0.592 34 H 0.043 0.957 35 H 0.039 0.961 36 H 0.036 0.964 37 H 0.037 0.963 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.570 -2.181 29.526 29.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.063 3.937 3 H 0.106 0.894 4 C -0.107 4.107 5 H 0.170 0.830 6 C 0.344 3.656 7 O -0.430 6.430 8 O -0.323 6.323 9 C -0.148 4.148 10 C -0.030 4.030 11 N -0.373 5.373 12 C 0.418 3.582 13 O -0.514 6.514 14 N -0.385 5.385 15 C 0.041 3.959 16 C -0.048 4.048 17 C -0.578 4.578 18 H 0.046 0.954 19 C -0.194 4.194 20 N -0.592 5.592 21 Si 0.783 3.217 22 H -0.188 1.188 23 H -0.214 1.214 24 H -0.159 1.159 25 H 0.072 0.928 26 H 0.093 0.907 27 H 0.070 0.930 28 H 0.291 0.709 29 H 0.095 0.905 30 H 0.145 0.855 31 H 0.105 0.895 32 H 0.119 0.881 33 H 0.245 0.755 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.165 -1.718 28.792 29.017 hybrid contribution -0.385 -0.545 -0.269 0.719 sum 2.781 -2.263 28.523 28.747 Atomic orbital electron populations 1.22257 0.95850 1.02034 1.02556 1.21200 0.93898 0.96165 0.82469 0.89371 1.22155 0.98129 1.00209 0.90248 0.83007 1.22957 0.83250 0.78533 0.80870 1.90742 1.42556 1.35914 1.73780 1.84510 1.58264 1.48249 1.41294 1.22838 1.03727 0.93673 0.94560 1.22670 0.95924 0.88622 0.95830 1.47582 1.54070 1.33061 1.02579 1.15600 0.80144 0.82281 0.80201 1.90870 1.44957 1.32144 1.83465 1.45140 1.54898 1.33379 1.05051 1.20890 0.98773 0.98299 0.77962 1.19628 0.96833 0.95692 0.92629 1.21251 1.31546 1.13803 0.91190 0.95364 1.26103 0.97718 1.01239 0.94320 1.70080 1.46842 1.41967 1.00291 0.85517 0.78965 0.77948 0.79303 1.18809 1.21353 1.15899 0.92767 0.90734 0.93016 0.70914 0.90546 0.85483 0.89483 0.88109 0.75504 0.93888 0.94285 0.94569 0.94435 0.92322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.12 8.11 71.98 0.58 -3.54 16 2 C 0.17 3.39 3.44 45.34 0.16 3.55 16 3 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 4 C -0.09 -1.09 3.37 -10.34 -0.03 -1.12 16 5 H 0.15 0.94 8.14 -2.39 -0.02 0.92 16 6 C 0.50 7.34 5.46 71.24 0.39 7.73 16 7 O -0.54 -11.47 15.76 21.94 0.35 -11.12 16 8 O -0.51 -4.92 13.42 -51.35 -0.69 -5.61 16 9 C -0.11 -1.24 6.39 31.99 0.20 -1.03 16 10 C 0.09 1.27 6.57 86.86 0.57 1.84 16 11 N -0.63 -15.05 3.08 -805.86 -2.48 -17.54 16 12 C 0.72 24.29 8.27 179.05 1.48 25.78 16 13 O -0.63 -27.31 15.18 -3.97 -0.06 -27.37 16 14 N -0.73 -23.88 5.52 -478.52 -2.64 -26.52 16 15 C 0.17 6.91 5.61 86.38 0.48 7.40 16 16 C -0.01 -0.44 4.16 29.85 0.12 -0.32 16 17 C -0.54 -30.97 9.66 25.60 0.25 -30.72 16 18 H 0.03 1.82 7.99 -2.91 -0.02 1.80 16 19 C 0.00 0.18 5.47 84.66 0.46 0.64 16 20 N -0.95 -59.58 13.96 21.45 0.30 -59.28 16 21 Si 0.96 42.05 27.47 68.60 1.88 43.94 16 22 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 23 H -0.29 -12.56 7.11 99.48 0.71 -11.86 16 24 H -0.24 -9.13 6.54 99.48 0.65 -8.48 16 25 H 0.05 1.42 7.45 -2.38 -0.02 1.40 16 26 H 0.07 1.51 7.25 -2.39 -0.02 1.50 16 27 H 0.05 1.62 6.64 -2.39 -0.02 1.61 16 28 H 0.43 0.83 9.10 -74.05 -0.67 0.16 16 29 H 0.08 1.22 7.22 -2.39 -0.02 1.20 16 30 H 0.13 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.09 1.15 7.30 -2.38 -0.02 1.13 16 32 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 33 H 0.41 10.43 6.95 -92.71 -0.64 9.78 16 34 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.04 1.78 8.14 -2.39 -0.02 1.77 16 36 H 0.04 1.52 7.20 -2.39 -0.02 1.50 16 37 H 0.04 1.54 7.57 -2.39 -0.02 1.52 16 38 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -80.63 313.49 1.04 -79.58 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -0.29 Total: 13.70 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: 4.67 Total: 10.21 kcal Atomic # 7 Polarization: -98.52 SS G_CDS: -4.82 Total: -103.34 kcal Atomic # 8 Polarization: -43.69 SS G_CDS: -0.40 Total: -44.10 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 1.88 Total: 43.94 kcal Total: -80.63 1.04 -79.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604634470.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.358 kcal (2) G-P(sol) polarization free energy of solvation -80.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds