Wall clock time and date at job start Mon Mar 30 2020 02:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.45994 * 2 1 4 4 C 1.53031 * 109.45397 * 240.02688 * 2 1 3 5 5 C 1.53119 * 109.27809 * 180.81327 * 4 2 1 6 6 C 1.53114 * 109.16591 * 57.65039 * 5 4 2 7 7 C 1.53036 * 109.27703 * 302.34896 * 6 5 4 8 8 H 1.08999 * 109.45804 * 299.16475 * 7 6 5 9 9 C 1.50703 * 109.46210 * 179.18851 * 7 6 5 10 10 O 1.20820 * 120.00490 * 266.39727 * 9 7 6 11 11 O 1.34233 * 119.99688 * 86.12190 * 9 7 6 12 12 N 1.46844 * 109.46134 * 119.97582 * 2 1 3 13 13 C 1.46901 * 111.00349 * 305.84869 * 12 2 1 14 14 C 1.50701 * 109.46869 * 301.70316 * 13 12 2 15 15 O 1.21295 * 119.99969 * 357.23299 * 14 13 12 16 16 N 1.34771 * 120.00014 * 177.24294 * 14 13 12 17 17 C 1.37100 * 120.00115 * 180.02562 * 16 14 13 18 18 H 1.08000 * 119.99813 * 359.97438 * 17 16 14 19 19 C 1.38947 * 120.00029 * 179.97438 * 17 16 14 20 20 N 1.31414 * 120.00107 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00010 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46936 * 59.99692 * 21 19 17 23 23 H 1.48496 * 109.47360 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47052 * 300.00180 * 21 19 17 25 25 H 1.09001 * 109.47064 * 307.07957 * 1 2 3 26 26 H 1.08997 * 109.47374 * 67.07882 * 1 2 3 27 27 H 1.09004 * 109.47316 * 187.08143 * 1 2 3 28 28 H 1.08998 * 109.50356 * 300.74782 * 4 2 1 29 29 H 1.09004 * 109.50572 * 60.83060 * 4 2 1 30 30 H 1.09002 * 109.52547 * 177.56334 * 5 4 2 31 31 H 1.09002 * 109.52025 * 297.68128 * 5 4 2 32 32 H 1.08997 * 109.50823 * 182.40392 * 6 5 4 33 33 H 1.09008 * 109.49918 * 62.28606 * 6 5 4 34 34 H 0.96701 * 117.00357 * 180.28176 * 11 9 7 35 35 H 1.08995 * 109.47460 * 61.70323 * 13 12 2 36 36 H 1.08998 * 109.47448 * 181.70515 * 13 12 2 37 37 H 0.97001 * 120.00046 * 359.97438 * 16 14 13 38 38 H 0.96998 * 119.99861 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0397 -0.7209 -1.2500 5 6 3.5707 -0.7363 -1.2357 6 6 4.0546 -1.4191 0.0465 7 6 3.4865 -0.6779 1.2589 8 1 3.8405 0.3530 1.2529 9 6 3.9440 -1.3586 2.5232 10 8 3.2483 -2.1985 3.0430 11 8 5.1272 -1.0356 3.0689 12 7 2.0192 -0.6918 1.1993 13 6 1.4374 -0.1106 2.4166 14 6 1.7823 1.3547 2.4880 15 8 2.4891 1.8535 1.6378 16 7 1.3056 2.1108 3.4966 17 6 1.6189 3.4439 3.5613 18 1 2.2481 3.8881 2.8042 19 6 1.1270 4.2236 4.6010 20 7 0.3610 3.6832 5.5220 21 14 1.5545 6.0399 4.6895 22 1 1.0651 6.7238 3.4655 23 1 0.9099 6.6425 5.8839 24 1 3.0278 6.1974 4.7890 25 1 -0.3633 0.6196 0.8199 26 1 -0.3634 0.4002 -0.9465 27 1 -0.3634 -1.0198 0.1267 28 1 1.6656 -1.7446 -1.2576 29 1 1.6887 -0.1985 -2.1400 30 1 3.9376 -1.2866 -2.1022 31 1 3.9456 0.2867 -1.2685 32 1 5.1437 -1.3952 0.0829 33 1 3.7121 -2.4539 0.0593 34 1 5.3797 -1.5019 3.8775 35 1 0.3540 -0.2281 2.3934 36 1 1.8396 -0.6215 3.2913 37 1 0.7402 1.7119 4.1765 38 1 0.0173 4.2276 6.2475 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604999275.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:27 Heat of formation + Delta-G solvation = -124.931092 kcal Electronic energy + Delta-G solvation = -22237.596029 eV Core-core repulsion = 18886.904446 eV Total energy + Delta-G solvation = -3350.691582 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.66006 -39.00453 -37.35354 -35.83554 -34.14495 -33.15139 -32.30867 -31.32897 -27.96775 -26.62401 -24.95449 -24.13087 -21.58995 -20.93108 -19.73561 -19.05204 -17.84395 -17.79943 -16.39760 -15.91735 -15.77772 -15.11293 -14.99305 -14.64843 -14.32215 -13.92965 -13.71014 -13.23942 -12.96471 -12.79150 -12.37065 -12.02120 -11.82699 -11.66304 -11.55936 -11.49786 -11.16019 -11.07224 -10.90571 -10.57956 -10.49879 -10.39076 -10.27962 -10.04700 -9.87255 -9.48313 -9.27351 -8.04087 -7.45479 -6.48507 -3.90255 2.44340 3.13943 3.16231 3.21294 3.25213 3.77688 4.11349 4.23626 4.85271 5.03497 5.04024 5.09854 5.17784 5.31084 5.54224 5.63821 5.72125 5.76995 5.85284 5.88541 5.97872 6.04780 6.11047 6.13130 6.16772 6.26256 6.34169 6.39877 6.46024 6.71022 6.80093 7.22878 7.39344 7.47736 7.96554 8.18096 8.51107 9.08572 9.44779 9.94526 10.67779 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.021219 B = 0.006028 C = 0.005440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.240282 B = 4644.119943 C = 5145.484529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.062 3.938 3 H 0.093 0.907 4 C -0.110 4.110 5 C -0.116 4.116 6 C -0.102 4.102 7 C 0.082 3.918 8 H 0.110 0.890 9 C 0.485 3.515 10 O -0.505 6.505 11 O -0.516 6.516 12 N -0.489 5.489 13 C 0.028 3.972 14 C 0.404 3.596 15 O -0.596 6.596 16 N -0.552 5.552 17 C -0.304 4.304 18 H 0.103 0.897 19 C 0.025 3.975 20 N -0.897 5.897 21 Si 0.931 3.069 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.273 1.273 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.405 0.595 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.393 0.607 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.144 -9.135 -8.274 13.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.046 4.046 3 H 0.111 0.889 4 C -0.148 4.148 5 C -0.154 4.154 6 C -0.140 4.140 7 C -0.027 4.027 8 H 0.128 0.872 9 C 0.326 3.674 10 O -0.392 6.392 11 O -0.327 6.327 12 N -0.214 5.214 13 C -0.104 4.104 14 C 0.189 3.811 15 O -0.484 6.484 16 N -0.187 5.187 17 C -0.434 4.434 18 H 0.121 0.879 19 C -0.177 4.177 20 N -0.537 5.537 21 Si 0.758 3.242 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.198 1.198 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.263 0.737 35 H 0.115 0.885 36 H 0.111 0.889 37 H 0.227 0.773 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.051 -9.237 -8.897 13.449 hybrid contribution 0.158 1.194 1.388 1.838 sum 4.208 -8.043 -7.509 11.780 Atomic orbital electron populations 1.21842 0.94718 1.01804 1.01695 1.21992 0.95031 0.99276 0.88268 0.88910 1.21641 0.95063 1.01023 0.97075 1.21533 0.96345 1.01087 0.96426 1.21504 0.99838 0.99787 0.92842 1.21386 0.90640 1.01464 0.89238 0.87245 1.23534 0.78107 0.80001 0.85736 1.90666 1.54603 1.31572 1.62335 1.84580 1.38237 1.65633 1.44214 1.62275 1.03770 1.53200 1.02187 1.22281 1.01891 0.92089 0.94115 1.21073 0.86166 0.89072 0.84755 1.90372 1.42682 1.74318 1.41039 1.42037 1.43981 1.09449 1.23189 1.19680 1.29480 0.84103 1.10128 0.87904 1.25305 0.96319 1.00703 0.95408 1.69608 1.33321 1.37411 1.13364 0.85916 0.78817 0.81768 0.77717 1.19840 1.20869 1.19846 0.92490 0.92420 0.92312 0.91626 0.91647 0.91691 0.91431 0.91021 0.90958 0.73682 0.88484 0.88912 0.77349 0.91638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 8.51 37.16 0.32 -1.82 16 2 C 0.06 1.00 1.96 -67.73 -0.13 0.87 16 3 H 0.09 1.83 5.47 -51.93 -0.28 1.55 16 4 C -0.11 -1.43 5.37 -26.65 -0.14 -1.58 16 5 C -0.12 -1.43 6.00 -26.61 -0.16 -1.59 16 6 C -0.10 -1.36 5.36 -26.65 -0.14 -1.51 16 7 C 0.08 1.39 1.97 -68.87 -0.14 1.26 16 8 H 0.11 2.16 5.89 -51.93 -0.31 1.86 16 9 C 0.48 8.21 6.45 36.01 0.23 8.44 16 10 O -0.50 -9.44 15.80 -18.75 -0.30 -9.73 16 11 O -0.52 -7.43 13.42 -39.27 -0.53 -7.96 16 12 N -0.49 -8.51 4.29 -221.57 -0.95 -9.46 16 13 C 0.03 0.53 4.91 -4.97 -0.02 0.51 16 14 C 0.40 9.30 7.02 -10.99 -0.08 9.23 16 15 O -0.60 -14.87 11.20 5.54 0.06 -14.81 16 16 N -0.55 -13.91 5.29 -10.96 -0.06 -13.96 16 17 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 18 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 19 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 20 N -0.90 -24.26 13.05 55.50 0.72 -23.53 16 21 Si 0.93 20.82 29.55 -169.99 -5.02 15.80 16 22 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 25 H 0.06 0.94 6.65 -51.93 -0.35 0.60 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.96 8.14 -51.92 -0.42 0.53 16 34 H 0.41 3.89 9.10 45.56 0.41 4.31 16 35 H 0.10 1.73 6.48 -51.93 -0.34 1.39 16 36 H 0.09 1.83 5.73 -51.93 -0.30 1.53 16 37 H 0.39 9.68 7.90 -40.82 -0.32 9.36 16 38 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 304.47 15.07 4.59 4.59 Total: -1.00 -31.01 304.47 -6.36 -37.37 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: -4.37 Total: 15.83 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: -0.51 Total: 5.89 kcal Atomic # 7 Polarization: -46.67 SS G_CDS: -0.28 Total: -46.96 kcal Atomic # 8 Polarization: -31.75 SS G_CDS: -0.76 Total: -32.51 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.01 -6.36 -37.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604999275.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.564 kcal (2) G-P(sol) polarization free energy of solvation -31.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds