Wall clock time and date at job start Mon Mar 30 2020 02:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.45994 * 2 1 4 4 C 1.53031 * 109.45397 * 240.02688 * 2 1 3 5 5 C 1.53119 * 109.27809 * 180.81327 * 4 2 1 6 6 C 1.53114 * 109.16591 * 57.65039 * 5 4 2 7 7 C 1.53036 * 109.27703 * 302.34896 * 6 5 4 8 8 H 1.08999 * 109.45804 * 299.16475 * 7 6 5 9 9 C 1.50703 * 109.46210 * 179.18851 * 7 6 5 10 10 O 1.20820 * 120.00490 * 266.39727 * 9 7 6 11 11 O 1.34233 * 119.99688 * 86.12190 * 9 7 6 12 12 N 1.46844 * 109.46134 * 119.97582 * 2 1 3 13 13 C 1.46901 * 111.00349 * 305.84869 * 12 2 1 14 14 C 1.50701 * 109.46869 * 301.70316 * 13 12 2 15 15 O 1.21295 * 119.99969 * 357.23299 * 14 13 12 16 16 N 1.34771 * 120.00014 * 177.24294 * 14 13 12 17 17 C 1.37100 * 120.00115 * 180.02562 * 16 14 13 18 18 H 1.08000 * 119.99813 * 359.97438 * 17 16 14 19 19 C 1.38947 * 120.00029 * 179.97438 * 17 16 14 20 20 N 1.31414 * 120.00107 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00010 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46936 * 59.99692 * 21 19 17 23 23 H 1.48496 * 109.47360 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47052 * 300.00180 * 21 19 17 25 25 H 1.09001 * 109.47064 * 307.07957 * 1 2 3 26 26 H 1.08997 * 109.47374 * 67.07882 * 1 2 3 27 27 H 1.09004 * 109.47316 * 187.08143 * 1 2 3 28 28 H 1.08998 * 109.50356 * 300.74782 * 4 2 1 29 29 H 1.09004 * 109.50572 * 60.83060 * 4 2 1 30 30 H 1.09002 * 109.52547 * 177.56334 * 5 4 2 31 31 H 1.09002 * 109.52025 * 297.68128 * 5 4 2 32 32 H 1.08997 * 109.50823 * 182.40392 * 6 5 4 33 33 H 1.09008 * 109.49918 * 62.28606 * 6 5 4 34 34 H 0.96701 * 117.00357 * 180.28176 * 11 9 7 35 35 H 1.08995 * 109.47460 * 61.70323 * 13 12 2 36 36 H 1.08998 * 109.47448 * 181.70515 * 13 12 2 37 37 H 0.97001 * 120.00046 * 359.97438 * 16 14 13 38 38 H 0.96998 * 119.99861 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0397 -0.7209 -1.2500 5 6 3.5707 -0.7363 -1.2357 6 6 4.0546 -1.4191 0.0465 7 6 3.4865 -0.6779 1.2589 8 1 3.8405 0.3530 1.2529 9 6 3.9440 -1.3586 2.5232 10 8 3.2483 -2.1985 3.0430 11 8 5.1272 -1.0356 3.0689 12 7 2.0192 -0.6918 1.1993 13 6 1.4374 -0.1106 2.4166 14 6 1.7823 1.3547 2.4880 15 8 2.4891 1.8535 1.6378 16 7 1.3056 2.1108 3.4966 17 6 1.6189 3.4439 3.5613 18 1 2.2481 3.8881 2.8042 19 6 1.1270 4.2236 4.6010 20 7 0.3610 3.6832 5.5220 21 14 1.5545 6.0399 4.6895 22 1 1.0651 6.7238 3.4655 23 1 0.9099 6.6425 5.8839 24 1 3.0278 6.1974 4.7890 25 1 -0.3633 0.6196 0.8199 26 1 -0.3634 0.4002 -0.9465 27 1 -0.3634 -1.0198 0.1267 28 1 1.6656 -1.7446 -1.2576 29 1 1.6887 -0.1985 -2.1400 30 1 3.9376 -1.2866 -2.1022 31 1 3.9456 0.2867 -1.2685 32 1 5.1437 -1.3952 0.0829 33 1 3.7121 -2.4539 0.0593 34 1 5.3797 -1.5019 3.8775 35 1 0.3540 -0.2281 2.3934 36 1 1.8396 -0.6215 3.2913 37 1 0.7402 1.7119 4.1765 38 1 0.0173 4.2276 6.2475 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604999275.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:26 Heat of formation + Delta-G solvation = -148.354361 kcal Electronic energy + Delta-G solvation = -22238.611738 eV Core-core repulsion = 18886.904446 eV Total energy + Delta-G solvation = -3351.707292 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.05274 -40.52226 -38.92684 -37.12033 -36.04863 -34.50457 -33.57740 -33.32296 -29.40314 -28.04100 -26.53686 -25.64896 -22.86860 -22.20068 -21.25058 -20.68627 -19.76241 -19.10095 -17.92286 -17.53545 -17.14788 -16.54302 -16.44729 -16.26494 -15.89558 -15.67008 -15.09225 -14.61000 -14.40829 -14.10925 -13.70857 -13.53978 -13.32250 -13.04228 -12.96861 -12.87401 -12.80272 -12.48603 -12.39801 -12.16510 -12.08459 -11.89240 -11.60805 -11.35505 -11.24052 -11.10689 -11.00063 -10.04752 -9.07609 -8.49708 -6.00560 1.10600 1.35362 1.38576 1.49667 1.93216 1.95270 2.25748 2.87559 3.15296 3.15636 3.79953 3.91574 4.00179 4.08323 4.26514 4.33963 4.36803 4.49409 4.53461 4.56449 4.69866 4.74078 4.94392 4.96177 5.02359 5.12689 5.19908 5.21639 5.30791 5.36222 5.52816 5.56470 5.81105 5.95164 6.05009 6.51542 6.97407 7.05487 7.47200 8.00267 8.65658 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.021219 B = 0.006028 C = 0.005440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.240282 B = 4644.119943 C = 5145.484529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.057 3.943 3 H 0.054 0.946 4 C -0.105 4.105 5 C -0.114 4.114 6 C -0.097 4.097 7 C 0.077 3.923 8 H 0.078 0.922 9 C 0.486 3.514 10 O -0.526 6.526 11 O -0.514 6.514 12 N -0.481 5.481 13 C 0.039 3.961 14 C 0.409 3.591 15 O -0.614 6.614 16 N -0.566 5.566 17 C -0.335 4.335 18 H 0.083 0.917 19 C -0.012 4.012 20 N -0.919 5.919 21 Si 0.994 3.006 22 H -0.270 1.270 23 H -0.271 1.271 24 H -0.271 1.271 25 H 0.031 0.969 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.053 0.947 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.426 0.574 35 H 0.111 0.889 36 H 0.090 0.910 37 H 0.393 0.607 38 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.429 -9.918 -9.340 14.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.050 4.050 3 H 0.072 0.928 4 C -0.142 4.142 5 C -0.152 4.152 6 C -0.134 4.134 7 C -0.033 4.033 8 H 0.095 0.905 9 C 0.328 3.672 10 O -0.415 6.415 11 O -0.327 6.327 12 N -0.206 5.206 13 C -0.093 4.093 14 C 0.196 3.804 15 O -0.502 6.502 16 N -0.202 5.202 17 C -0.464 4.464 18 H 0.101 0.899 19 C -0.212 4.212 20 N -0.560 5.560 21 Si 0.817 3.183 22 H -0.195 1.195 23 H -0.195 1.195 24 H -0.196 1.196 25 H 0.051 0.949 26 H 0.095 0.905 27 H 0.092 0.908 28 H 0.097 0.903 29 H 0.101 0.899 30 H 0.116 0.884 31 H 0.072 0.928 32 H 0.106 0.894 33 H 0.099 0.901 34 H 0.288 0.712 35 H 0.129 0.871 36 H 0.108 0.892 37 H 0.227 0.773 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.355 -10.039 -9.964 14.799 hybrid contribution 0.130 1.389 1.686 2.188 sum 4.486 -8.650 -8.278 12.786 Atomic orbital electron populations 1.21821 0.93722 1.02294 1.01805 1.22056 0.95942 0.97619 0.89384 0.92768 1.21636 0.95548 1.01377 0.95664 1.21558 0.95845 1.00698 0.97067 1.21556 1.00730 0.99614 0.91541 1.21488 0.90303 1.00292 0.91232 0.90462 1.23539 0.78422 0.79596 0.85620 1.90655 1.55332 1.32609 1.62861 1.84533 1.37103 1.65725 1.45373 1.62416 1.04220 1.52254 1.01733 1.22233 1.02905 0.88932 0.95255 1.21863 0.84629 0.90480 0.83427 1.90382 1.43061 1.75329 1.41444 1.42116 1.44934 1.09148 1.24026 1.19665 1.30634 0.85496 1.10651 0.89950 1.26093 0.95830 1.04651 0.94633 1.69679 1.33713 1.38875 1.13684 0.84982 0.78572 0.76674 0.78078 1.19531 1.19505 1.19648 0.94949 0.90490 0.90823 0.90327 0.89879 0.88377 0.92847 0.89410 0.90140 0.71243 0.87057 0.89217 0.77332 0.91192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.99 8.51 71.98 0.61 -3.37 16 2 C 0.06 1.82 1.96 44.94 0.09 1.91 16 3 H 0.05 2.18 5.47 -2.38 -0.01 2.17 16 4 C -0.10 -2.46 5.37 30.64 0.16 -2.30 16 5 C -0.11 -2.53 6.00 30.67 0.18 -2.35 16 6 C -0.10 -2.39 5.36 30.64 0.16 -2.23 16 7 C 0.08 2.56 1.97 44.19 0.09 2.65 16 8 H 0.08 3.12 5.89 -2.39 -0.01 3.11 16 9 C 0.49 16.14 6.45 71.24 0.46 16.60 16 10 O -0.53 -19.23 15.80 21.98 0.35 -18.88 16 11 O -0.51 -14.37 13.42 -51.45 -0.69 -15.06 16 12 N -0.48 -16.50 4.29 -854.91 -3.67 -20.16 16 13 C 0.04 1.49 4.91 85.56 0.42 1.91 16 14 C 0.41 19.44 7.02 87.66 0.62 20.05 16 15 O -0.61 -31.77 11.20 -3.08 -0.03 -31.80 16 16 N -0.57 -29.48 5.29 -306.99 -1.62 -31.11 16 17 C -0.33 -18.93 9.68 84.04 0.81 -18.12 16 18 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16 19 C -0.01 -0.63 5.50 84.93 0.47 -0.17 16 20 N -0.92 -50.06 13.05 21.66 0.28 -49.77 16 21 Si 0.99 42.77 29.55 68.60 2.03 44.80 16 22 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 23 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 24 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 25 H 0.03 1.06 6.65 -2.39 -0.02 1.05 16 26 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 28 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.09 1.88 8.14 -2.39 -0.02 1.87 16 33 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 34 H 0.43 7.64 9.10 -74.06 -0.67 6.97 16 35 H 0.11 3.97 6.48 -2.39 -0.02 3.96 16 36 H 0.09 3.57 5.73 -2.39 -0.01 3.55 16 37 H 0.39 20.01 7.90 -92.71 -0.73 19.27 16 38 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -67.56 304.47 0.42 -67.14 By element: Atomic # 1 Polarization: 40.56 SS G_CDS: -0.30 Total: 40.26 kcal Atomic # 6 Polarization: 10.51 SS G_CDS: 4.08 Total: 14.59 kcal Atomic # 7 Polarization: -96.04 SS G_CDS: -5.01 Total: -101.04 kcal Atomic # 8 Polarization: -65.37 SS G_CDS: -0.38 Total: -65.74 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -67.56 0.42 -67.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604999275.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.210 kcal (2) G-P(sol) polarization free energy of solvation -67.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds