Wall clock time and date at job start Mon Mar 30 2020 02:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.52998 * 109.46838 * 240.00016 * 2 1 3 5 5 C 1.50704 * 109.47251 * 174.31703 * 4 2 1 6 6 O 1.20826 * 119.99467 * 4.52735 * 5 4 2 7 7 O 1.34220 * 120.00002 * 184.52624 * 5 4 2 8 8 N 1.46903 * 109.47219 * 120.00398 * 2 1 3 9 9 C 1.46898 * 111.00294 * 60.40137 * 8 2 1 10 10 C 1.53236 * 109.34274 * 172.74694 * 9 8 2 11 11 N 1.47088 * 108.51922 * 53.82605 * 10 9 8 12 12 C 1.34775 * 120.87525 * 128.83877 * 11 10 9 13 13 O 1.21686 * 120.00454 * 5.08587 * 12 11 10 14 14 C 1.46375 * 119.99613 * 185.08762 * 12 11 10 15 15 H 1.08001 * 120.00423 * 5.97830 * 14 12 11 16 16 C 1.40051 * 120.00049 * 185.97435 * 14 12 11 17 17 N 1.30672 * 119.99888 * 354.75954 * 16 14 12 18 18 Si 1.86803 * 120.00093 * 174.75847 * 16 14 12 19 19 H 1.48498 * 109.46833 * 94.99961 * 18 16 14 20 20 H 1.48504 * 109.46836 * 214.99940 * 18 16 14 21 21 H 1.48495 * 109.46914 * 334.99550 * 18 16 14 22 22 C 1.47070 * 118.23826 * 308.81758 * 11 10 9 23 23 C 1.46903 * 110.99771 * 296.09696 * 8 2 1 24 24 H 1.08995 * 109.47316 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47037 * 299.99515 * 1 2 3 26 26 H 1.08993 * 109.47412 * 59.99830 * 1 2 3 27 27 H 1.09003 * 109.47124 * 294.31731 * 4 2 1 28 28 H 1.09004 * 109.47390 * 54.31675 * 4 2 1 29 29 H 0.96703 * 117.00152 * 179.97438 * 7 5 4 30 30 H 1.09001 * 109.49408 * 52.78429 * 9 8 2 31 31 H 1.09002 * 109.51169 * 292.72198 * 9 8 2 32 32 H 1.08995 * 109.63091 * 173.53900 * 10 9 8 33 33 H 1.09002 * 109.62818 * 294.12561 * 10 9 8 34 34 H 0.97000 * 120.00100 * 179.97438 * 17 16 14 35 35 H 1.08999 * 109.63171 * 291.47241 * 22 11 10 36 36 H 1.09004 * 109.62788 * 170.89206 * 22 11 10 37 37 H 1.08998 * 109.49492 * 307.21412 * 23 8 2 38 38 H 1.09007 * 109.49098 * 67.29582 * 23 8 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 3.5404 -0.6006 -1.3217 6 8 4.1480 -0.0710 -0.4216 7 8 4.2017 -1.0815 -2.3861 8 7 2.0197 -0.6926 1.1994 9 6 1.5566 -2.0863 1.2285 10 6 2.2320 -2.8214 2.3911 11 7 1.9927 -2.0605 3.6270 12 6 1.5010 -2.6646 4.7269 13 8 1.3359 -3.8701 4.7366 14 6 1.1655 -1.8704 5.9098 15 1 1.2200 -0.7925 5.8698 16 6 0.7738 -2.5082 7.0935 17 7 0.6087 -3.8043 7.1134 18 14 0.4874 -1.5062 8.6438 19 1 -0.9560 -1.1775 8.7610 20 1 0.9136 -2.2942 9.8282 21 1 1.2771 -0.2505 8.5744 22 6 2.3047 -0.6233 3.6307 23 6 1.6264 0.0253 2.4192 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 1.7620 -1.7741 -1.1998 28 1 1.5959 -0.2695 -2.1363 29 1 5.1635 -0.9806 -2.3878 30 1 1.8156 -2.5754 0.2894 31 1 0.4752 -2.1079 1.3636 32 1 1.8078 -3.8207 2.4884 33 1 3.3039 -2.8919 2.2064 34 1 0.3377 -4.2462 7.9333 35 1 3.3836 -0.4826 3.5651 36 1 1.9284 -0.1693 4.5475 37 1 1.9361 1.0676 2.3438 38 1 0.5440 -0.0253 2.5380 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609734639.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:34 Heat of formation + Delta-G solvation = -111.087671 kcal Electronic energy + Delta-G solvation = -21667.584340 eV Core-core repulsion = 18317.493054 eV Total energy + Delta-G solvation = -3350.091287 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.35963 -38.99587 -37.04075 -35.94835 -34.27850 -32.52564 -31.15913 -30.68147 -28.39493 -26.67839 -25.48002 -23.08373 -22.65965 -21.01805 -19.83804 -18.41247 -17.96026 -16.85735 -16.53777 -16.15387 -15.63047 -15.01929 -14.78703 -14.41400 -14.19194 -14.04406 -13.58915 -13.52069 -12.89553 -12.58878 -12.35762 -12.12329 -11.88247 -11.63462 -11.38839 -11.38084 -11.34418 -11.13994 -10.88638 -10.67936 -10.56582 -10.40766 -10.29005 -10.18332 -9.90883 -8.84060 -8.02477 -7.55654 -7.13465 -6.18881 -4.62848 2.33653 3.03798 3.13696 3.21322 3.25032 4.00338 4.11899 4.55628 4.57442 4.65730 4.88843 5.11587 5.21952 5.30837 5.36388 5.56510 5.58616 5.64604 5.69623 5.74493 5.85987 5.90016 5.98378 6.12346 6.19424 6.33601 6.51144 6.54570 6.58809 6.78765 7.32047 7.35966 7.47227 7.65632 7.98725 8.15944 8.39704 9.03443 9.47722 10.59048 10.77911 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.033826 B = 0.004540 C = 0.004407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.574997 B = 6165.676449 C = 6351.460449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.091 3.909 3 H 0.089 0.911 4 C -0.109 4.109 5 C 0.473 3.527 6 O -0.484 6.484 7 O -0.529 6.529 8 N -0.518 5.518 9 C 0.036 3.964 10 C 0.127 3.873 11 N -0.643 5.643 12 C 0.560 3.440 13 O -0.580 6.580 14 C -0.545 4.545 15 H 0.073 0.927 16 C 0.088 3.912 17 N -0.768 5.768 18 Si 0.905 3.095 19 H -0.273 1.273 20 H -0.279 1.279 21 H -0.264 1.264 22 C 0.128 3.872 23 C 0.045 3.955 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.060 0.940 27 H 0.108 0.892 28 H 0.104 0.896 29 H 0.406 0.594 30 H 0.069 0.931 31 H 0.038 0.962 32 H 0.083 0.917 33 H 0.046 0.954 34 H 0.268 0.732 35 H 0.049 0.951 36 H 0.094 0.906 37 H 0.073 0.927 38 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.698 8.748 -16.128 18.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.019 4.019 3 H 0.107 0.893 4 C -0.147 4.147 5 C 0.313 3.687 6 O -0.368 6.368 7 O -0.342 6.342 8 N -0.243 5.243 9 C -0.092 4.092 10 C 0.003 3.997 11 N -0.382 5.382 12 C 0.366 3.634 13 O -0.463 6.463 14 C -0.581 4.581 15 H 0.091 0.909 16 C -0.132 4.132 17 N -0.397 5.397 18 Si 0.730 3.270 19 H -0.199 1.199 20 H -0.204 1.204 21 H -0.188 1.188 22 C 0.003 3.997 23 C -0.084 4.084 24 H 0.081 0.919 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.126 0.874 28 H 0.122 0.878 29 H 0.264 0.736 30 H 0.088 0.912 31 H 0.057 0.943 32 H 0.102 0.898 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.112 0.888 37 H 0.092 0.908 38 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 1.813 7.994 -15.731 17.739 hybrid contribution -0.364 0.637 0.667 0.992 sum 1.449 8.631 -15.064 17.422 Atomic orbital electron populations 1.22475 0.96747 1.02819 1.02612 1.21536 0.92529 0.98561 0.89225 0.89302 1.21549 0.88134 1.04758 1.00255 1.23302 0.91564 0.75032 0.78762 1.90778 1.69423 1.39447 1.37172 1.84527 1.27159 1.76651 1.45853 1.62176 1.59039 1.01812 1.01229 1.22636 0.98058 0.89291 0.99244 1.21162 0.98422 0.96062 0.84066 1.48215 1.70053 1.07773 1.12122 1.18245 0.76440 0.87330 0.81417 1.90585 1.58390 1.15160 1.82140 1.20965 1.48367 0.93545 0.95263 0.90948 1.25725 0.92956 0.94711 0.99767 1.70028 1.33195 1.09178 1.27258 0.86397 0.78984 0.80448 0.81200 1.19871 1.20394 1.18770 1.21494 0.98405 0.82866 0.96917 1.22534 0.98258 0.97410 0.90187 0.91949 0.91551 0.92131 0.87410 0.87793 0.73560 0.91234 0.94334 0.89829 0.93535 0.92148 0.93225 0.88765 0.90846 0.94410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.93 8.51 37.16 0.32 -1.62 16 2 C 0.09 1.05 1.92 -67.71 -0.13 0.92 16 3 H 0.09 1.05 7.94 -51.93 -0.41 0.63 16 4 C -0.11 -1.05 5.09 -27.88 -0.14 -1.19 16 5 C 0.47 5.48 8.22 36.01 0.30 5.77 16 6 O -0.48 -7.41 16.07 -18.75 -0.30 -7.71 16 7 O -0.53 -4.82 13.42 -39.23 -0.53 -5.35 16 8 N -0.52 -7.85 3.71 -226.34 -0.84 -8.69 16 9 C 0.04 0.58 4.78 -3.70 -0.02 0.57 16 10 C 0.13 2.62 6.58 -3.60 -0.02 2.59 16 11 N -0.64 -15.14 3.01 -174.12 -0.52 -15.67 16 12 C 0.56 16.20 7.63 -12.99 -0.10 16.10 16 13 O -0.58 -19.02 14.52 5.20 0.08 -18.94 16 14 C -0.54 -15.38 8.86 -35.63 -0.32 -15.70 16 15 H 0.07 1.86 5.71 -52.49 -0.30 1.56 16 16 C 0.09 2.46 5.50 -17.37 -0.10 2.37 16 17 N -0.77 -23.13 11.85 55.55 0.66 -22.48 16 18 Si 0.91 20.12 29.56 -169.99 -5.03 15.10 16 19 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 20 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 21 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 22 C 0.13 2.52 6.52 -3.61 -0.02 2.49 16 23 C 0.04 0.72 5.11 -3.70 -0.02 0.70 16 24 H 0.06 0.68 6.58 -51.93 -0.34 0.34 16 25 H 0.07 0.75 6.66 -51.93 -0.35 0.41 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.11 1.00 5.96 -51.93 -0.31 0.69 16 28 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.41 2.20 9.10 45.56 0.41 2.62 16 30 H 0.07 0.94 5.82 -51.93 -0.30 0.64 16 31 H 0.04 0.65 6.73 -51.93 -0.35 0.30 16 32 H 0.08 1.87 7.10 -51.93 -0.37 1.50 16 33 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.27 7.31 8.29 -40.82 -0.34 6.97 16 35 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.09 1.90 5.37 -51.93 -0.28 1.62 16 37 H 0.07 1.04 8.07 -51.93 -0.42 0.62 16 38 H 0.04 0.63 6.79 -51.93 -0.35 0.28 16 LS Contribution 304.87 15.07 4.59 4.59 Total: -1.00 -36.66 304.87 -6.33 -42.99 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -4.19 Total: 3.15 kcal Atomic # 6 Polarization: 13.26 SS G_CDS: -0.25 Total: 13.01 kcal Atomic # 7 Polarization: -46.13 SS G_CDS: -0.70 Total: -46.84 kcal Atomic # 8 Polarization: -31.25 SS G_CDS: -0.75 Total: -32.00 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.03 Total: 15.10 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -36.66 -6.33 -42.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609734639.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.100 kcal (2) G-P(sol) polarization free energy of solvation -36.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds