Wall clock time and date at job start Mon Mar 30 2020 02:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.52998 * 109.46838 * 240.00016 * 2 1 3 5 5 C 1.50704 * 109.47251 * 174.31703 * 4 2 1 6 6 O 1.20826 * 119.99467 * 4.52735 * 5 4 2 7 7 O 1.34220 * 120.00002 * 184.52624 * 5 4 2 8 8 N 1.46903 * 109.47219 * 120.00398 * 2 1 3 9 9 C 1.46898 * 111.00294 * 60.40137 * 8 2 1 10 10 C 1.53236 * 109.34274 * 172.74694 * 9 8 2 11 11 N 1.47088 * 108.51922 * 53.82605 * 10 9 8 12 12 C 1.34775 * 120.87525 * 128.83877 * 11 10 9 13 13 O 1.21686 * 120.00454 * 5.08587 * 12 11 10 14 14 C 1.46375 * 119.99613 * 185.08762 * 12 11 10 15 15 H 1.08001 * 120.00423 * 5.97830 * 14 12 11 16 16 C 1.40051 * 120.00049 * 185.97435 * 14 12 11 17 17 N 1.30672 * 119.99888 * 354.75954 * 16 14 12 18 18 Si 1.86803 * 120.00093 * 174.75847 * 16 14 12 19 19 H 1.48498 * 109.46833 * 94.99961 * 18 16 14 20 20 H 1.48504 * 109.46836 * 214.99940 * 18 16 14 21 21 H 1.48495 * 109.46914 * 334.99550 * 18 16 14 22 22 C 1.47070 * 118.23826 * 308.81758 * 11 10 9 23 23 C 1.46903 * 110.99771 * 296.09696 * 8 2 1 24 24 H 1.08995 * 109.47316 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47037 * 299.99515 * 1 2 3 26 26 H 1.08993 * 109.47412 * 59.99830 * 1 2 3 27 27 H 1.09003 * 109.47124 * 294.31731 * 4 2 1 28 28 H 1.09004 * 109.47390 * 54.31675 * 4 2 1 29 29 H 0.96703 * 117.00152 * 179.97438 * 7 5 4 30 30 H 1.09001 * 109.49408 * 52.78429 * 9 8 2 31 31 H 1.09002 * 109.51169 * 292.72198 * 9 8 2 32 32 H 1.08995 * 109.63091 * 173.53900 * 10 9 8 33 33 H 1.09002 * 109.62818 * 294.12561 * 10 9 8 34 34 H 0.97000 * 120.00100 * 179.97438 * 17 16 14 35 35 H 1.08999 * 109.63171 * 291.47241 * 22 11 10 36 36 H 1.09004 * 109.62788 * 170.89206 * 22 11 10 37 37 H 1.08998 * 109.49492 * 307.21412 * 23 8 2 38 38 H 1.09007 * 109.49098 * 67.29582 * 23 8 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 3.5404 -0.6006 -1.3217 6 8 4.1480 -0.0710 -0.4216 7 8 4.2017 -1.0815 -2.3861 8 7 2.0197 -0.6926 1.1994 9 6 1.5566 -2.0863 1.2285 10 6 2.2320 -2.8214 2.3911 11 7 1.9927 -2.0605 3.6270 12 6 1.5010 -2.6646 4.7269 13 8 1.3359 -3.8701 4.7366 14 6 1.1655 -1.8704 5.9098 15 1 1.2200 -0.7925 5.8698 16 6 0.7738 -2.5082 7.0935 17 7 0.6087 -3.8043 7.1134 18 14 0.4874 -1.5062 8.6438 19 1 -0.9560 -1.1775 8.7610 20 1 0.9136 -2.2942 9.8282 21 1 1.2771 -0.2505 8.5744 22 6 2.3047 -0.6233 3.6307 23 6 1.6264 0.0253 2.4192 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 1.7620 -1.7741 -1.1998 28 1 1.5959 -0.2695 -2.1363 29 1 5.1635 -0.9806 -2.3878 30 1 1.8156 -2.5754 0.2894 31 1 0.4752 -2.1079 1.3636 32 1 1.8078 -3.8207 2.4884 33 1 3.3039 -2.8919 2.2064 34 1 0.3377 -4.2462 7.9333 35 1 3.3836 -0.4826 3.5651 36 1 1.9284 -0.1693 4.5475 37 1 1.9361 1.0676 2.3438 38 1 0.5440 -0.0253 2.5380 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609734639.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:34 Heat of formation + Delta-G solvation = -139.881995 kcal Electronic energy + Delta-G solvation = -21668.832956 eV Core-core repulsion = 18317.493054 eV Total energy + Delta-G solvation = -3351.339902 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.32593 -40.37855 -38.76546 -36.88314 -35.90346 -34.66501 -32.49815 -32.20120 -29.27493 -28.63671 -27.05990 -24.61396 -23.73590 -22.44448 -21.23020 -19.93463 -18.80149 -18.49526 -17.88522 -17.40544 -17.16050 -16.33203 -16.18671 -15.86731 -15.81110 -15.64455 -15.01788 -14.67846 -14.34535 -13.87627 -13.53305 -13.42412 -13.24056 -13.01857 -12.92640 -12.79553 -12.72048 -12.64638 -12.29561 -12.12742 -12.03395 -11.84859 -11.72514 -11.53981 -11.32382 -10.93224 -9.79695 -9.35124 -8.94036 -8.30096 -6.84337 1.39256 1.40916 1.48258 1.56911 2.23396 2.31524 2.45092 2.73129 3.01442 3.58535 3.71639 3.95337 4.08737 4.15863 4.25953 4.34679 4.43528 4.48766 4.59632 4.60203 4.66169 4.71675 4.81169 4.86822 4.93174 5.01098 5.09394 5.18008 5.34910 5.38736 5.73687 5.83273 6.07223 6.14680 6.20182 6.42113 6.87224 7.22149 7.42095 8.45445 8.66467 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.033826 B = 0.004540 C = 0.004407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.574997 B = 6165.676449 C = 6351.460449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.091 3.909 3 H 0.092 0.908 4 C -0.107 4.107 5 C 0.476 3.524 6 O -0.529 6.529 7 O -0.523 6.523 8 N -0.528 5.528 9 C 0.053 3.947 10 C 0.124 3.876 11 N -0.646 5.646 12 C 0.540 3.460 13 O -0.634 6.634 14 C -0.569 4.569 15 H 0.093 0.907 16 C 0.029 3.971 17 N -0.823 5.823 18 Si 0.996 3.004 19 H -0.261 1.261 20 H -0.274 1.274 21 H -0.247 1.247 22 C 0.125 3.875 23 C 0.055 3.945 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.090 0.910 27 H 0.114 0.886 28 H 0.141 0.859 29 H 0.422 0.578 30 H 0.100 0.900 31 H 0.031 0.969 32 H 0.055 0.945 33 H 0.046 0.954 34 H 0.274 0.726 35 H 0.050 0.950 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.319 11.135 -17.408 20.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.017 4.017 3 H 0.110 0.890 4 C -0.144 4.144 5 C 0.319 3.681 6 O -0.417 6.417 7 O -0.337 6.337 8 N -0.252 5.252 9 C -0.076 4.076 10 C 0.000 4.000 11 N -0.383 5.383 12 C 0.347 3.653 13 O -0.522 6.522 14 C -0.605 4.605 15 H 0.111 0.889 16 C -0.186 4.186 17 N -0.452 5.452 18 Si 0.815 3.185 19 H -0.186 1.186 20 H -0.199 1.199 21 H -0.170 1.170 22 C 0.001 3.999 23 C -0.073 4.073 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.108 0.892 27 H 0.132 0.868 28 H 0.159 0.841 29 H 0.283 0.717 30 H 0.118 0.882 31 H 0.049 0.951 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.105 0.895 37 H 0.117 0.883 38 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 1.461 10.425 -17.096 20.077 hybrid contribution -0.157 -0.118 0.925 0.945 sum 1.304 10.307 -16.171 19.221 Atomic orbital electron populations 1.22409 0.95498 1.02613 1.03479 1.21621 0.93428 0.98490 0.88178 0.89019 1.21617 0.87002 1.05176 1.00619 1.23663 0.92319 0.73869 0.78295 1.90771 1.70446 1.41647 1.38818 1.84493 1.28656 1.75870 1.44700 1.62135 1.59582 1.01289 1.02208 1.22418 0.96871 0.90034 0.98280 1.21273 0.98714 0.95314 0.84739 1.48111 1.68795 1.09541 1.11830 1.18687 0.76617 0.86967 0.83062 1.90529 1.60803 1.17301 1.83542 1.21482 1.48616 0.94702 0.95737 0.88889 1.27004 0.91747 0.95897 1.03935 1.70202 1.34372 1.11814 1.28831 0.85037 0.79511 0.78721 0.75244 1.18577 1.19853 1.16982 1.21641 0.98803 0.80719 0.98716 1.22377 0.97431 0.98296 0.89239 0.92661 0.92826 0.89156 0.86778 0.84093 0.71734 0.88196 0.95132 0.92668 0.93529 0.91622 0.93150 0.89494 0.88311 0.94932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.18 8.51 71.98 0.61 -2.57 16 2 C 0.09 1.83 1.92 44.91 0.09 1.92 16 3 H 0.09 1.86 7.94 -2.39 -0.02 1.84 16 4 C -0.11 -1.66 5.09 29.85 0.15 -1.51 16 5 C 0.48 9.75 8.22 71.24 0.59 10.34 16 6 O -0.53 -15.29 16.07 21.96 0.35 -14.94 16 7 O -0.52 -8.05 13.42 -51.32 -0.69 -8.74 16 8 N -0.53 -15.09 3.71 -870.00 -3.22 -18.32 16 9 C 0.05 1.65 4.78 86.38 0.41 2.06 16 10 C 0.12 5.22 6.58 86.35 0.57 5.79 16 11 N -0.65 -31.34 3.01 -823.03 -2.48 -33.81 16 12 C 0.54 32.60 7.63 86.36 0.66 33.26 16 13 O -0.63 -43.93 14.52 -4.30 -0.06 -43.99 16 14 C -0.57 -32.79 8.86 24.83 0.22 -32.57 16 15 H 0.09 4.79 5.71 -2.91 -0.02 4.77 16 16 C 0.03 1.65 5.50 85.31 0.47 2.12 16 17 N -0.82 -51.23 11.85 21.84 0.26 -50.97 16 18 Si 1.00 41.31 29.56 68.60 2.03 43.34 16 19 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 20 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 21 H -0.25 -9.46 7.11 99.48 0.71 -8.76 16 22 C 0.12 4.91 6.52 86.35 0.56 5.47 16 23 C 0.06 1.71 5.11 86.38 0.44 2.15 16 24 H 0.05 1.06 6.58 -2.39 -0.02 1.05 16 25 H 0.05 1.09 6.66 -2.38 -0.02 1.07 16 26 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.11 1.69 5.96 -2.39 -0.01 1.67 16 28 H 0.14 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.42 3.58 9.10 -74.06 -0.67 2.91 16 30 H 0.10 2.52 5.82 -2.39 -0.01 2.50 16 31 H 0.03 1.02 6.73 -2.39 -0.02 1.00 16 32 H 0.05 2.62 7.10 -2.39 -0.02 2.60 16 33 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.27 15.42 8.29 -92.71 -0.77 14.65 16 35 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.09 3.50 5.37 -2.39 -0.01 3.49 16 37 H 0.10 2.58 8.07 -2.39 -0.02 2.56 16 38 H 0.03 1.05 6.79 -2.38 -0.02 1.03 16 Total: -1.00 -83.75 304.87 1.38 -82.37 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: 0.42 Total: 18.61 kcal Atomic # 6 Polarization: 21.69 SS G_CDS: 4.77 Total: 26.46 kcal Atomic # 7 Polarization: -97.66 SS G_CDS: -5.44 Total: -103.10 kcal Atomic # 8 Polarization: -67.27 SS G_CDS: -0.40 Total: -67.67 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Total: -83.75 1.38 -82.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609734639.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.515 kcal (2) G-P(sol) polarization free energy of solvation -83.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds