Wall clock time and date at job start Mon Mar 30 2020 01:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.47108 * 2 1 4 4 H 1.08991 * 109.46829 * 306.69573 * 3 2 1 5 5 C 1.50698 * 109.46744 * 66.69784 * 3 2 1 6 6 O 1.20825 * 119.99794 * 120.00631 * 5 3 2 7 7 O 1.34221 * 120.00286 * 299.99174 * 5 3 2 8 8 C 1.50698 * 109.46728 * 186.69399 * 3 2 1 9 9 O 1.21280 * 120.00403 * 334.63020 * 8 3 2 10 10 N 1.34781 * 119.99732 * 154.62926 * 8 3 2 11 11 C 1.46970 * 120.59285 * 4.41182 * 10 8 3 12 12 C 1.53808 * 108.39422 * 124.75964 * 11 10 8 13 13 N 1.46961 * 108.58377 * 49.64210 * 12 11 10 14 14 C 1.36932 * 120.60014 * 124.62381 * 13 12 11 15 15 H 1.08005 * 120.00382 * 210.59505 * 14 13 12 16 16 C 1.38813 * 119.99772 * 30.58552 * 14 13 12 17 17 N 1.31619 * 120.00014 * 9.29799 * 16 14 13 18 18 Si 1.86804 * 120.00018 * 189.29498 * 16 14 13 19 19 H 1.48501 * 109.46907 * 60.00303 * 18 16 14 20 20 H 1.48497 * 109.47169 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46968 * 300.00392 * 18 16 14 22 22 C 1.46972 * 118.80734 * 304.64613 * 13 12 11 23 23 C 1.46960 * 120.59651 * 184.69707 * 10 8 3 24 24 H 1.08998 * 109.46827 * 300.00343 * 1 2 3 25 25 H 1.08997 * 109.46788 * 59.99662 * 1 2 3 26 26 H 1.08998 * 109.47200 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47428 * 119.99947 * 2 1 3 28 28 H 1.08998 * 109.47507 * 239.99975 * 2 1 3 29 29 H 0.96698 * 117.00459 * 180.02562 * 7 5 3 30 30 H 1.08999 * 109.60772 * 244.54411 * 11 10 8 31 31 H 1.09001 * 109.60434 * 5.05435 * 11 10 8 32 32 H 1.08999 * 109.74155 * 289.84603 * 12 11 10 33 33 H 1.08999 * 109.53151 * 169.30508 * 12 11 10 34 34 H 0.97005 * 119.99759 * 179.97438 * 17 16 14 35 35 H 1.09009 * 109.60714 * 295.47985 * 22 13 12 36 36 H 1.09001 * 109.61070 * 174.97139 * 22 13 12 37 37 H 1.09007 * 109.60728 * 354.94322 * 23 10 8 38 38 H 1.08999 * 109.61533 * 115.45635 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5822 1.9897 -0.8239 5 6 1.6775 2.1034 1.3049 6 8 2.5464 2.5331 2.0263 7 8 0.3895 2.2150 1.6657 8 6 3.5379 1.4457 -0.1656 9 8 4.1880 0.4812 0.1778 10 7 4.1550 2.5204 -0.6954 11 6 3.3930 3.7327 -1.0267 12 6 4.0404 4.9257 -0.3032 13 7 5.4862 4.9042 -0.5658 14 6 6.1131 5.9957 -1.1049 15 1 6.9806 5.8640 -1.7346 16 6 5.6334 7.2716 -0.8422 17 7 4.6960 7.4484 0.0647 18 14 6.3183 8.7375 -1.7757 19 1 6.0763 8.5556 -3.2295 20 1 5.6452 9.9776 -1.3127 21 1 7.7783 8.8447 -1.5265 22 6 6.2472 3.6898 -0.2398 23 6 5.6008 2.4988 -0.9581 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5138 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 0.2063 2.6467 2.5113 30 1 3.4178 3.8974 -2.1039 31 1 2.3610 3.6180 -0.6952 32 1 3.8621 4.8468 0.7692 33 1 3.6140 5.8554 -0.6800 34 1 4.3611 8.3401 0.2485 35 1 6.2260 3.5229 0.8372 36 1 7.2783 3.8033 -0.5747 37 1 6.0272 1.5691 -0.5812 38 1 5.7791 2.5777 -2.0305 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609887977.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:24 Heat of formation + Delta-G solvation = -122.672083 kcal Electronic energy + Delta-G solvation = -22058.973893 eV Core-core repulsion = 18708.380269 eV Total energy + Delta-G solvation = -3350.593624 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.10794 -40.54750 -38.56423 -37.21566 -35.70897 -35.63262 -33.27026 -31.92253 -29.91069 -28.46524 -25.61484 -24.61137 -24.32095 -23.02807 -21.59416 -20.10457 -19.28783 -18.84126 -18.23335 -17.70913 -17.06480 -16.84882 -16.56094 -15.88533 -15.46925 -15.24058 -15.13939 -14.90691 -14.87472 -14.35967 -13.96286 -13.72039 -13.31496 -13.12647 -12.82343 -12.73483 -12.69060 -12.50112 -12.26729 -12.14811 -12.02537 -11.89659 -11.86386 -11.72768 -11.53903 -10.97557 -10.60479 -9.88851 -8.65240 -7.87907 -5.43095 1.06432 1.14672 1.49748 1.51253 1.58270 1.90123 2.26315 2.50252 3.16846 3.27527 3.53366 3.63001 3.86812 4.15211 4.20248 4.23779 4.31653 4.43042 4.48961 4.54640 4.59694 4.70956 4.76846 4.86569 5.03546 5.14113 5.19931 5.23809 5.48246 5.51415 5.57385 5.60185 5.63410 6.35054 6.36949 6.88201 6.99103 7.10084 7.75676 8.31186 9.16478 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.028821 B = 0.005426 C = 0.004944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.287104 B = 5159.465370 C = 5662.309716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.095 4.095 3 C -0.102 4.102 4 H 0.158 0.842 5 C 0.495 3.505 6 O -0.544 6.544 7 O -0.489 6.489 8 C 0.524 3.476 9 O -0.573 6.573 10 N -0.595 5.595 11 C 0.094 3.906 12 C 0.166 3.834 13 N -0.608 5.608 14 C -0.266 4.266 15 H 0.073 0.927 16 C -0.047 4.047 17 N -0.939 5.939 18 Si 0.976 3.024 19 H -0.272 1.272 20 H -0.295 1.295 21 H -0.279 1.279 22 C 0.131 3.869 23 C 0.105 3.895 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.059 0.941 28 H 0.088 0.912 29 H 0.428 0.572 30 H 0.085 0.915 31 H 0.090 0.910 32 H -0.012 1.012 33 H 0.083 0.917 34 H 0.252 0.748 35 H -0.002 1.002 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.315 -11.637 -3.212 16.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.133 4.133 3 C -0.123 4.123 4 H 0.175 0.825 5 C 0.338 3.662 6 O -0.434 6.434 7 O -0.302 6.302 8 C 0.312 3.688 9 O -0.453 6.453 10 N -0.326 5.326 11 C -0.030 4.030 12 C 0.040 3.960 13 N -0.331 5.331 14 C -0.396 4.396 15 H 0.091 0.909 16 C -0.242 4.242 17 N -0.584 5.584 18 Si 0.804 3.196 19 H -0.197 1.197 20 H -0.221 1.221 21 H -0.205 1.205 22 C 0.004 3.996 23 C -0.019 4.019 24 H 0.093 0.907 25 H 0.090 0.910 26 H 0.091 0.909 27 H 0.078 0.922 28 H 0.106 0.894 29 H 0.290 0.710 30 H 0.103 0.897 31 H 0.108 0.892 32 H 0.006 0.994 33 H 0.101 0.899 34 H 0.061 0.939 35 H 0.016 0.984 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.712 -12.034 -3.157 16.418 hybrid contribution 0.539 1.460 0.726 1.717 sum -10.173 -10.575 -2.431 14.874 Atomic orbital electron populations 1.21971 0.91895 1.03281 1.04047 1.21342 0.98328 0.89654 1.03948 1.21429 0.92854 1.02243 0.95813 0.82514 1.22850 0.80882 0.75192 0.87322 1.90860 1.51330 1.46567 1.54604 1.84489 1.25887 1.74260 1.45597 1.20298 0.89822 0.82112 0.76562 1.90627 1.67445 1.36045 1.51227 1.48093 1.09524 1.13944 1.60996 1.22623 0.94982 0.84375 1.01029 1.21081 0.84082 0.96326 0.94547 1.44208 1.03590 1.12131 1.73190 1.19553 1.12264 0.85016 1.22779 0.90942 1.25962 0.99740 1.00328 0.98201 1.70112 1.32224 1.21724 1.34380 0.85221 0.77797 0.78154 0.78476 1.19704 1.22075 1.20480 1.21370 0.95951 0.86895 0.95370 1.22076 0.79757 0.99288 1.00735 0.90704 0.90988 0.90871 0.92211 0.89362 0.70966 0.89720 0.89156 0.99428 0.89868 0.93866 0.98377 0.90439 0.89551 0.89899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 9.60 71.98 0.69 -1.52 16 2 C -0.09 -1.95 4.81 30.60 0.15 -1.80 16 3 C -0.10 -2.60 1.79 -12.29 -0.02 -2.62 16 4 H 0.16 3.04 6.66 -2.39 -0.02 3.02 16 5 C 0.50 13.87 6.98 71.24 0.50 14.37 16 6 O -0.54 -21.26 16.79 21.97 0.37 -20.89 16 7 O -0.49 -8.86 10.65 -51.33 -0.55 -9.41 16 8 C 0.52 18.41 6.03 87.66 0.53 18.94 16 9 O -0.57 -23.33 15.64 -3.03 -0.05 -23.37 16 10 N -0.59 -21.86 2.94 -817.15 -2.40 -24.26 16 11 C 0.09 3.35 6.35 86.56 0.55 3.90 16 12 C 0.17 8.01 5.49 86.56 0.47 8.49 16 13 N -0.61 -30.88 2.97 -697.34 -2.07 -32.95 16 14 C -0.27 -14.36 9.60 84.03 0.81 -13.56 16 15 H 0.07 3.74 7.85 -2.91 -0.02 3.72 16 16 C -0.05 -2.57 5.09 84.86 0.43 -2.14 16 17 N -0.94 -54.59 10.87 21.65 0.24 -54.36 16 18 Si 0.98 43.60 29.56 68.60 2.03 45.63 16 19 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 20 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 21 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 22 C 0.13 5.80 6.67 86.41 0.58 6.38 16 23 C 0.11 3.93 6.60 86.42 0.57 4.50 16 24 H 0.07 1.11 5.52 -2.39 -0.01 1.10 16 25 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.06 1.44 8.07 -2.39 -0.02 1.42 16 28 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.43 4.69 9.10 -74.06 -0.67 4.01 16 30 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 31 H 0.09 2.68 5.27 -2.39 -0.01 2.66 16 32 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 33 H 0.08 4.39 5.89 -2.39 -0.01 4.37 16 34 H 0.25 14.20 8.31 -92.70 -0.77 13.43 16 35 H 0.00 -0.09 8.14 -2.38 -0.02 -0.11 16 36 H 0.08 3.20 7.93 -2.39 -0.02 3.18 16 37 H 0.09 3.17 6.99 -2.38 -0.02 3.16 16 38 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 Total: -1.00 -74.64 308.32 3.22 -71.42 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: 0.41 Total: 13.25 kcal Atomic # 6 Polarization: 29.69 SS G_CDS: 5.25 Total: 34.94 kcal Atomic # 7 Polarization: -107.33 SS G_CDS: -4.24 Total: -111.57 kcal Atomic # 8 Polarization: -53.44 SS G_CDS: -0.23 Total: -53.67 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -74.64 3.22 -71.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609887977.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.252 kcal (2) G-P(sol) polarization free energy of solvation -74.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds