Wall clock time and date at job start Mon Mar 30 2020 02:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.90849 * 2 1 4 4 C 1.53986 * 109.91759 * 238.89760 * 2 1 3 5 5 H 1.09000 * 110.31016 * 120.40617 * 4 2 1 6 6 C 1.50694 * 110.31055 * 358.34162 * 4 2 1 7 7 O 1.21300 * 120.00233 * 292.73504 * 6 4 2 8 8 N 1.34771 * 120.00389 * 112.73534 * 6 4 2 9 9 C 1.37104 * 120.00161 * 184.83126 * 8 6 4 10 10 H 1.07993 * 120.00249 * 39.66939 * 9 8 6 11 11 C 1.38955 * 119.99867 * 219.66908 * 9 8 6 12 12 N 1.31416 * 119.99918 * 200.66111 * 11 9 8 13 13 Si 1.86796 * 119.99990 * 20.66460 * 11 9 8 14 14 H 1.48500 * 109.47076 * 264.81211 * 13 11 9 15 15 H 1.48498 * 109.47177 * 24.80808 * 13 11 9 16 16 H 1.48493 * 109.47232 * 144.81318 * 13 11 9 17 17 C 1.46498 * 119.99994 * 4.82990 * 8 6 4 18 18 C 1.50704 * 109.46931 * 275.07292 * 17 8 6 19 19 O 1.20820 * 119.99957 * 359.97438 * 18 17 8 20 20 O 1.34235 * 119.99768 * 179.97438 * 18 17 8 21 21 C 1.54602 * 105.22828 * 239.37481 * 4 2 1 22 22 C 1.55104 * 102.84043 * 338.15305 * 21 4 2 23 23 N 1.47905 * 109.91455 * 121.30909 * 2 1 3 24 24 C 1.46905 * 110.99917 * 265.19625 * 23 2 1 25 25 H 1.08995 * 109.46930 * 184.68857 * 1 2 3 26 26 H 1.09001 * 109.46974 * 304.68943 * 1 2 3 27 27 H 1.09003 * 109.46783 * 64.68642 * 1 2 3 28 28 H 0.96994 * 119.99491 * 179.97438 * 12 11 9 29 29 H 1.08997 * 109.46968 * 35.07274 * 17 8 6 30 30 H 1.08998 * 109.47269 * 155.07677 * 17 8 6 31 31 H 0.96694 * 116.99658 * 179.97438 * 20 18 17 32 32 H 1.08993 * 110.72474 * 96.44785 * 21 4 2 33 33 H 1.08991 * 110.72348 * 219.73721 * 21 4 2 34 34 H 1.09004 * 110.58971 * 278.87326 * 22 21 4 35 35 H 1.08997 * 110.82792 * 155.85497 * 22 21 4 36 36 H 1.09001 * 109.47127 * 59.99655 * 24 23 2 37 37 H 1.08997 * 109.46964 * 180.02562 * 24 23 2 38 38 H 1.08998 * 109.47098 * 300.00492 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9012 1.0249 0.0000 4 6 2.0546 -0.7479 -1.2396 5 1 2.6700 -0.0857 -1.8487 6 6 0.9047 -1.2855 -2.0517 7 8 0.2061 -2.1696 -1.6025 8 7 0.6524 -0.7842 -3.2769 9 6 -0.4513 -1.2023 -3.9748 10 1 -1.3865 -1.3641 -3.4597 11 6 -0.3663 -1.4178 -5.3449 12 7 -1.4564 -1.4169 -6.0790 13 14 1.2971 -1.7089 -6.1433 14 1 1.8224 -0.4256 -6.6747 15 1 2.2424 -2.2506 -5.1343 16 1 1.1490 -2.6816 -7.2554 17 6 1.5573 0.2076 -3.8632 18 6 1.1770 1.5830 -3.3787 19 8 0.2454 1.7207 -2.6218 20 8 1.8733 2.6551 -3.7881 21 6 2.9075 -1.9105 -0.6818 22 6 3.2681 -1.4199 0.7447 23 7 2.0339 -0.7226 1.1881 24 6 2.3212 0.2081 2.2878 25 1 -0.3633 -1.0242 0.0840 26 1 -0.3633 0.5849 0.8450 27 1 -0.3633 0.4394 -0.9290 28 1 -1.3970 -1.5669 -7.0354 29 1 2.5816 -0.0130 -3.5631 30 1 1.4812 0.1713 -4.9499 31 1 1.5917 3.5164 -3.4507 32 1 2.3239 -2.8300 -0.6371 33 1 3.8065 -2.0517 -1.2816 34 1 4.1097 -0.7280 0.7108 35 1 3.4905 -2.2623 1.3996 36 1 1.4095 0.7390 2.5620 37 1 2.6904 -0.3494 3.1485 38 1 3.0771 0.9255 1.9684 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610394809.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:31 Heat of formation + Delta-G solvation = -92.644500 kcal Electronic energy + Delta-G solvation = -22671.555681 eV Core-core repulsion = 19322.264150 eV Total energy + Delta-G solvation = -3349.291531 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.37448 -39.36860 -37.61566 -35.73720 -34.79664 -32.40080 -31.77667 -30.95464 -28.10382 -26.72681 -24.73801 -24.52311 -21.82206 -21.27740 -20.54343 -18.19309 -17.76169 -17.33784 -16.91736 -16.13366 -15.51716 -15.46670 -14.97643 -14.81471 -14.34160 -14.02384 -13.58722 -12.99384 -12.78474 -12.71131 -12.62073 -12.33324 -12.12122 -11.70079 -11.60270 -11.26630 -11.17354 -11.10194 -10.86172 -10.72470 -10.68265 -10.57922 -10.32189 -10.08647 -9.98249 -9.13055 -8.52761 -8.27472 -7.89194 -6.45325 -4.06606 2.64321 2.93188 3.11270 3.17021 3.22462 3.73386 4.04395 4.12423 4.27058 4.76235 4.86509 5.03552 5.14622 5.28180 5.35036 5.42333 5.44976 5.53859 5.63196 5.66969 5.74050 5.81725 5.87647 5.95368 6.04749 6.14718 6.42466 6.46169 6.53123 6.81933 7.07603 7.17109 7.26483 7.44638 8.21551 8.31246 8.42944 8.88478 9.20142 9.65181 10.66540 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.021687 B = 0.007757 C = 0.007008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.792047 B = 3608.949483 C = 3994.644799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.091 3.909 3 H 0.046 0.954 4 C -0.125 4.125 5 H 0.076 0.924 6 C 0.500 3.500 7 O -0.535 6.535 8 N -0.455 5.455 9 C -0.310 4.310 10 H 0.107 0.893 11 C 0.059 3.941 12 N -0.858 5.858 13 Si 0.861 3.139 14 H -0.272 1.272 15 H -0.258 1.258 16 H -0.280 1.280 17 C 0.097 3.903 18 C 0.454 3.546 19 O -0.487 6.487 20 O -0.527 6.527 21 C -0.109 4.109 22 C 0.037 3.963 23 N -0.514 5.514 24 C 0.018 3.982 25 H 0.083 0.917 26 H 0.038 0.962 27 H 0.081 0.919 28 H 0.275 0.725 29 H 0.103 0.897 30 H 0.113 0.887 31 H 0.400 0.600 32 H 0.092 0.908 33 H 0.071 0.929 34 H 0.040 0.960 35 H 0.082 0.918 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.247 6.078 7.581 15.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.017 4.017 3 H 0.064 0.936 4 C -0.147 4.147 5 H 0.095 0.905 6 C 0.288 3.712 7 O -0.413 6.413 8 N -0.178 5.178 9 C -0.437 4.437 10 H 0.125 0.875 11 C -0.147 4.147 12 N -0.494 5.494 13 Si 0.687 3.313 14 H -0.199 1.199 15 H -0.182 1.182 16 H -0.206 1.206 17 C -0.030 4.030 18 C 0.293 3.707 19 O -0.372 6.372 20 O -0.339 6.339 21 C -0.148 4.148 22 C -0.091 4.091 23 N -0.238 5.238 24 C -0.131 4.131 25 H 0.101 0.899 26 H 0.058 0.942 27 H 0.099 0.901 28 H 0.086 0.914 29 H 0.121 0.879 30 H 0.131 0.869 31 H 0.258 0.742 32 H 0.110 0.890 33 H 0.090 0.910 34 H 0.058 0.942 35 H 0.100 0.900 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 11.213 4.861 7.897 14.551 hybrid contribution 1.267 1.360 -0.775 2.014 sum 12.481 6.222 7.122 15.659 Atomic orbital electron populations 1.22105 0.92750 1.04060 1.01948 1.22107 0.97665 0.94199 0.87728 0.93566 1.22339 0.97125 0.98295 0.96947 0.90528 1.19782 0.85935 0.83139 0.82300 1.90566 1.50293 1.31087 1.69382 1.43452 1.24752 1.33203 1.16356 1.19035 0.89166 1.44920 0.90623 0.87504 1.25421 0.97188 0.95816 0.96274 1.69743 1.28288 1.44775 1.06565 0.87166 0.85263 0.78706 0.80138 1.19897 1.18230 1.20602 1.21696 0.96273 0.83463 1.01535 1.24722 0.80293 0.87428 0.78288 1.90665 1.27440 1.86133 1.33006 1.84587 1.59963 1.18677 1.70661 1.22491 0.98913 0.98857 0.94490 1.23243 0.91171 0.98271 0.96390 1.64734 1.26027 1.26359 1.06679 1.22490 1.00379 0.95206 0.94980 0.89854 0.94250 0.90074 0.91449 0.87919 0.86946 0.74192 0.88956 0.90999 0.94153 0.89973 0.91428 0.91482 0.95887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 8.31 37.16 0.31 -2.70 16 2 C 0.09 1.58 3.08 -66.64 -0.21 1.37 16 3 H 0.05 0.75 7.74 -51.93 -0.40 0.35 16 4 C -0.12 -2.23 2.87 -90.42 -0.26 -2.49 16 5 H 0.08 1.22 5.42 -51.93 -0.28 0.93 16 6 C 0.50 11.44 4.53 -10.99 -0.05 11.39 16 7 O -0.53 -14.11 14.19 5.54 0.08 -14.03 16 8 N -0.45 -10.80 1.68 -116.10 -0.20 -11.00 16 9 C -0.31 -8.66 9.31 -14.93 -0.14 -8.80 16 10 H 0.11 3.40 8.00 -52.49 -0.42 2.98 16 11 C 0.06 1.60 5.29 -17.46 -0.09 1.51 16 12 N -0.86 -24.44 13.96 55.50 0.77 -23.66 16 13 Si 0.86 19.31 25.04 -169.99 -4.26 15.05 16 14 H -0.27 -5.60 6.70 56.52 0.38 -5.22 16 15 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 16 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 17 C 0.10 1.89 4.23 -5.19 -0.02 1.87 16 18 C 0.45 8.32 7.93 36.01 0.29 8.61 16 19 O -0.49 -10.33 14.99 -18.75 -0.28 -10.61 16 20 O -0.53 -7.37 13.42 -39.27 -0.53 -7.90 16 21 C -0.11 -1.70 6.57 -24.78 -0.16 -1.86 16 22 C 0.04 0.50 6.56 -1.81 -0.01 0.48 16 23 N -0.51 -7.94 5.19 -230.67 -1.20 -9.14 16 24 C 0.02 0.22 9.40 60.07 0.56 0.79 16 25 H 0.08 1.88 6.32 -51.93 -0.33 1.55 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.08 1.82 5.16 -51.93 -0.27 1.55 16 28 H 0.28 7.22 8.31 -40.82 -0.34 6.88 16 29 H 0.10 1.63 6.33 -51.93 -0.33 1.30 16 30 H 0.11 2.29 3.70 -51.93 -0.19 2.10 16 31 H 0.40 3.75 9.10 45.56 0.41 4.17 16 32 H 0.09 1.65 7.31 -51.93 -0.38 1.27 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.04 0.47 7.96 -51.93 -0.41 0.06 16 35 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.02 0.26 8.01 -51.93 -0.42 -0.16 16 LS Contribution 301.53 15.07 4.54 4.54 Total: -1.00 -32.78 301.53 -5.13 -37.91 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -4.29 Total: 8.65 kcal Atomic # 6 Polarization: 9.96 SS G_CDS: 0.22 Total: 10.18 kcal Atomic # 7 Polarization: -43.19 SS G_CDS: -0.62 Total: -43.80 kcal Atomic # 8 Polarization: -31.80 SS G_CDS: -0.73 Total: -32.53 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -4.26 Total: 15.05 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.78 -5.13 -37.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610394809.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.734 kcal (2) G-P(sol) polarization free energy of solvation -32.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds